Domain of unknown function (DUF4228)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29195 |
| fragaria_vesca | FvH4_3g07740 |
| malus_domestica | MD05G1300400.v1.1 MD10G1279500.v1.1 |
| prunus_persica | Prupe.4G061900_v2.0.a1 Prupe.4G061900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0010861 |
| rosa_laevigata | RLG00000031792 |
| rosa_multiflora | Rmu_sc0000109.1_g000007 |
| rosa_rugosa | Rorug04G0453300 |
| rosa_samantha | Rh5CG092700 Rh5DG080400 |
| rosa_wichuraiana | Rw0G017930 Rw0G022220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 310 |
| AccII | CGCG | 1 cut(s) | 237 |
| AciI | CCGC | 3 cut(s) | 102, 237, 466 |
| AclI | AACGTT | 1 cut(s) | 369 |
| AclWI | GGATC | 1 cut(s) | 468 |
| AdeI | CACNNNGTG | 1 cut(s) | 524 |
| AfaI | GTAC | 2 cut(s) | 72, 419 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AjiI | CACGTC | 2 cut(s) | 148, 476 |
| AleI | CACNNNNGTG | 1 cut(s) | 186 |
| AluBI | AGCT | 2 cut(s) | 50, 229 |
| AluI | AGCT | 2 cut(s) | 50, 229 |
| Alw21I | GWGCWC | 1 cut(s) | 52 |
| Alw26I | GTCTC | 2 cut(s) | 338, 456 |
| AlwI | GGATC | 1 cut(s) | 468 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 21, 266 |
| AoxI | GGCC | 3 cut(s) | 114, 132, 491 |
| ApeKI | GCWGC | 3 cut(s) | 21, 229, 269 |
| AspS9I | GGNCC | 1 cut(s) | 114 |
| AsuC2I | CCSGG | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 1 cut(s) | 510 |
| BanII | GRGCYC | 1 cut(s) | 52 |
| BbsI | GAAGAC | 1 cut(s) | 308 |
| Bbv12I | GWGCWC | 1 cut(s) | 52 |
| BbvI | GCAGC | 3 cut(s) | 8, 216, 256 |
| BccI | CCATC | 1 cut(s) | 20 |
| BceAI | ACGGC | 1 cut(s) | 157 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcnI | CCSGG | 1 cut(s) | 113 |
| BcoDI | GTCTC | 2 cut(s) | 338, 456 |
| BisI | GCNGC | 5 cut(s) | 22, 103, 230, 270, 467 |
| BlpI | GCTNAGC | 1 cut(s) | 225 |
| BlsI | GCNGC | 5 cut(s) | 23, 104, 231, 271, 468 |
| BmcAI | AGTACT | 1 cut(s) | 419 |
| Bme1390I | CCNGG | 1 cut(s) | 113 |
| BmgBI | CACGTC | 2 cut(s) | 148, 476 |
| BmgT120I | GGNCC | 1 cut(s) | 114 |
| BmrFI | CCNGG | 1 cut(s) | 113 |
| BmsI | GCATC | 3 cut(s) | 33, 211, 393 |
| BpiI | GAAGAC | 1 cut(s) | 308 |
| Bpu10I | CCTNAGC | 1 cut(s) | 141 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 225 |
| BpuEI | CTTGAG | 2 cut(s) | 137, 442 |
| BpuMI | CCSGG | 1 cut(s) | 113 |
| BsaI | GGTCTC | 1 cut(s) | 338 |
| Bse1I | ACTGG | 1 cut(s) | 260 |
| BseGI | GGATG | 2 cut(s) | 61, 281 |
| BseMII | CTCAG | 2 cut(s) | 216, 467 |
| BseNI | ACTGG | 1 cut(s) | 260 |
| BseRI | GAGGAG | 1 cut(s) | 154 |
| BseXI | GCAGC | 3 cut(s) | 8, 216, 256 |
| Bsh1236I | CGCG | 1 cut(s) | 237 |
| BshFI | GGCC | 3 cut(s) | 116, 134, 493 |
| BsiHKAI | GWGCWC | 1 cut(s) | 52 |
| BsiSI | CCGG | 1 cut(s) | 112 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BsmAI | GTCTC | 2 cut(s) | 338, 456 |
| BsmBI | CGTCTC | 1 cut(s) | 456 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsmI | GAATGC | 2 cut(s) | 33, 445 |
| BsnI | GGCC | 3 cut(s) | 116, 134, 493 |
| Bso31I | GGTCTC | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 52 |
| Bsp143I | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 225 |
| BspACI | CCGC | 3 cut(s) | 102, 237, 466 |
| BspANI | GGCC | 3 cut(s) | 116, 134, 493 |
| BspCNI | CTCAG | 2 cut(s) | 217, 466 |
| BspFNI | CGCG | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 126 |
| BspPI | GGATC | 1 cut(s) | 468 |
| BspTNI | GGTCTC | 1 cut(s) | 338 |
| BsrI | ACTGG | 1 cut(s) | 260 |
| BssMI | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| Bst4CI | ACNGT | 3 cut(s) | 77, 188, 435 |
| Bst6I | CTCTTC | 1 cut(s) | 87 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 2 cut(s) | 118, 267 |
| BstDEI | CTNAG | 4 cut(s) | 141, 225, 276, 453 |
| BstF5I | GGATG | 2 cut(s) | 61, 281 |
| BstFNI | CGCG | 1 cut(s) | 237 |
| BstKTI | GATC | 7 cut(s) | 99, 126, 181, 204, 311, 415, 463 |
| BstMAI | GTCTC | 2 cut(s) | 338, 456 |
| BstMBI | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 30 |
| BstSCI | CCNGG | 1 cut(s) | 111 |
| BstUI | CGCG | 1 cut(s) | 237 |
| BstV1I | GCAGC | 3 cut(s) | 8, 216, 256 |
| BstV2I | GAAGAC | 1 cut(s) | 308 |
| BsuRI | GGCC | 3 cut(s) | 116, 134, 493 |
| BtgZI | GCGATG | 2 cut(s) | 153, 370 |
| BtrI | CACGTC | 2 cut(s) | 148, 476 |
| BtsCI | GGATG | 2 cut(s) | 61, 281 |
| BtsIMutI | CAGTG | 2 cut(s) | 73, 267 |
| Cac8I | GCNNGC | 2 cut(s) | 118, 267 |
| CaiI | CAGNNNCTG | 2 cut(s) | 21, 266 |
| CciI | TCATGA | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 1 cut(s) | 114 |
| Csp6I | GTAC | 2 cut(s) | 71, 418 |
| CviAII | CATG | 4 cut(s) | 42, 127, 256, 391 |
| CviJI | RGCY | 6 cut(s) | 50, 116, 134, 160, 229, 493 |
| CviKI_1 | RGCY | 6 cut(s) | 50, 116, 134, 160, 229, 493 |
| CviQI | GTAC | 2 cut(s) | 71, 418 |
| DdeI | CTNAG | 4 cut(s) | 141, 225, 276, 453 |
| DpnI | GATC | 7 cut(s) | 98, 125, 180, 203, 310, 414, 462 |
| DpnII | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| DraIII | CACNNNGTG | 1 cut(s) | 524 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 310 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 310 |
| Eam1104I | CTCTTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 1 cut(s) | 87 |
| Ecl136II | GAGCTC | 1 cut(s) | 50 |
| Eco147I | AGGCCT | 2 cut(s) | 134, 493 |
| Eco24I | GRGCYC | 1 cut(s) | 52 |
| Eco31I | GGTCTC | 1 cut(s) | 338 |
| Eco32I | GATATC | 1 cut(s) | 408 |
| Eco53kI | GAGCTC | 1 cut(s) | 50 |
| EcoICRI | GAGCTC | 1 cut(s) | 50 |
| EcoRV | GATATC | 1 cut(s) | 408 |
| EcoT38I | GRGCYC | 1 cut(s) | 52 |
| Esp3I | CGTCTC | 1 cut(s) | 456 |
| FaeI | CATG | 4 cut(s) | 45, 130, 259, 394 |
| FaiI | YATR | 6 cut(s) | 43, 128, 257, 392, 509, 511 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 233, 265 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FatI | CATG | 4 cut(s) | 41, 126, 255, 390 |
| FauNDI | CATATG | 1 cut(s) | 509 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 5 cut(s) | 22, 103, 230, 270, 467 |
| FokI | GGATG | 2 cut(s) | 68, 268 |
| FriOI | GRGCYC | 1 cut(s) | 52 |
| Fsp4HI | GCNGC | 5 cut(s) | 22, 103, 230, 270, 467 |
| GluI | GCNGC | 5 cut(s) | 22, 103, 230, 270, 467 |
| HaeIII | GGCC | 3 cut(s) | 116, 134, 493 |
| HapII | CCGG | 1 cut(s) | 112 |
| Hin1II | CATG | 4 cut(s) | 45, 130, 259, 394 |
| HinfI | GANTC | 2 cut(s) | 66, 515 |
| HpaII | CCGG | 1 cut(s) | 112 |
| HphI | GGTGA | 1 cut(s) | 510 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 5 cut(s) | 178, 286, 412, 439, 456 |
| Hpy188III | TCNNGA | 5 cut(s) | 53, 127, 154, 205, 403 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| Hpy99I | CGWCG | 1 cut(s) | 316 |
| HpyAV | CCTTC | 1 cut(s) | 124 |
| HpyCH4III | ACNGT | 3 cut(s) | 77, 188, 435 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 369, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 33, 232 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 30 |
| HpyF3I | CTNAG | 4 cut(s) | 141, 225, 276, 453 |
| HpySE526I | ACGT | 3 cut(s) | 147, 369, 475 |
| Hsp92II | CATG | 4 cut(s) | 45, 130, 259, 394 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| Kzo9I | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| LmnI | GCTCC | 1 cut(s) | 47 |
| LpnPI | CCDG | 5 cut(s) | 38, 125, 130, 273, 279 |
| Lsp1109I | GCAGC | 3 cut(s) | 8, 216, 256 |
| LweI | GCATC | 3 cut(s) | 33, 211, 393 |
| MaeII | ACGT | 3 cut(s) | 147, 369, 475 |
| MaeIII | GTNAC | 1 cut(s) | 516 |
| MalI | GATC | 7 cut(s) | 98, 125, 180, 203, 310, 414, 462 |
| MboI | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| MboII | GAAGA | 3 cut(s) | 104, 313, 334 |
| MhlI | GDGCHC | 1 cut(s) | 52 |
| MlyI | GAGTC | 2 cut(s) | 75, 524 |
| MmeI | TCCRAC | 1 cut(s) | 417 |
| MnlI | CCTC | 9 cut(s) | 161, 172, 175, 263, 410, 450, 464, 483, 504 |
| MseI | TTAA | 1 cut(s) | 333 |
| MslI | CAYNNNNRTG | 4 cut(s) | 78, 186, 260, 389 |
| MspA1I | CMGCKG | 1 cut(s) | 102 |
| MspI | CCGG | 1 cut(s) | 112 |
| MspR9I | CCNGG | 1 cut(s) | 113 |
| Mva1269I | GAATGC | 2 cut(s) | 33, 445 |
| MvnI | CGCG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 30 |
| NciI | CCSGG | 1 cut(s) | 113 |
| NdeI | CATATG | 1 cut(s) | 509 |
| NdeII | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| NlaIII | CATG | 4 cut(s) | 45, 130, 259, 394 |
| NmuCI | GTSAC | 1 cut(s) | 516 |
| OliI | CACNNNNGTG | 1 cut(s) | 186 |
| PagI | TCATGA | 1 cut(s) | 126 |
| PceI | AGGCCT | 2 cut(s) | 134, 493 |
| PctI | GAATGC | 2 cut(s) | 33, 445 |
| PkrI | GCNGC | 5 cut(s) | 23, 104, 231, 271, 468 |
| PleI | GAGTC | 2 cut(s) | 74, 523 |
| PpsI | GAGTC | 2 cut(s) | 74, 523 |
| Psp124BI | GAGCTC | 1 cut(s) | 52 |
| Psp1406I | AACGTT | 1 cut(s) | 369 |
| PspPI | GGNCC | 1 cut(s) | 114 |
| PstNI | CAGNNNCTG | 2 cut(s) | 21, 266 |
| RsaI | GTAC | 2 cut(s) | 72, 419 |
| RsaNI | GTAC | 2 cut(s) | 71, 418 |
| RseI | CAYNNNNRTG | 4 cut(s) | 78, 186, 260, 389 |
| SacI | GAGCTC | 1 cut(s) | 52 |
| SaqAI | TTAA | 1 cut(s) | 333 |
| SatI | GCNGC | 5 cut(s) | 22, 103, 230, 270, 467 |
| Sau3AI | GATC | 7 cut(s) | 96, 123, 178, 201, 308, 412, 460 |
| Sau96I | GGNCC | 1 cut(s) | 114 |
| ScaI | AGTACT | 1 cut(s) | 419 |
| SchI | GAGTC | 2 cut(s) | 75, 524 |
| ScrFI | CCNGG | 1 cut(s) | 113 |
| SduI | GDGCHC | 1 cut(s) | 52 |
| SetI | ASST | 7 cut(s) | 20, 52, 150, 231, 372, 402, 478 |
| SfaNI | GCATC | 3 cut(s) | 33, 211, 393 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 78, 186, 260, 389 |
| SmlI | CTYRAG | 2 cut(s) | 152, 421 |
| SmoI | CTYRAG | 2 cut(s) | 152, 421 |
| SseBI | AGGCCT | 2 cut(s) | 134, 493 |
| SsiI | CCGC | 3 cut(s) | 102, 237, 466 |
| SstI | GAGCTC | 1 cut(s) | 52 |
| StuI | AGGCCT | 2 cut(s) | 134, 493 |
| StyD4I | CCNGG | 1 cut(s) | 111 |
| TaaI | ACNGT | 3 cut(s) | 77, 188, 435 |
| TaiI | ACGT | 3 cut(s) | 150, 372, 478 |
| TaqI | TCGA | 1 cut(s) | 90 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TauI | GCSGC | 2 cut(s) | 105, 469 |
| Tru1I | TTAA | 1 cut(s) | 333 |
| Tru9I | TTAA | 1 cut(s) | 333 |
| TscAI | CASTG | 2 cut(s) | 80, 267 |
| TseFI | GTSAC | 1 cut(s) | 516 |
| TseI | GCWGC | 3 cut(s) | 21, 229, 269 |
| Tsp45I | GTSAC | 1 cut(s) | 516 |
| TspDTI | ATGAA | 3 cut(s) | 17, 143, 392 |
| TspRI | CASTG | 2 cut(s) | 80, 267 |
| ZrmI | AGTACT | 1 cut(s) | 419 |