Prupe.4G065900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017620
Physical Location & Seq
Reverse (-)
3155934 .. 3156485
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G065900.1

Sequence Viewer

Length: 480 bp
ATGGAGGAGACCATGGACTCTCTCTGGTTTTTCAGCAATGTCTTCTTCTCTTCAAGAGCTACAATTTTGGGTCCAATTGAGCCTGTTGAAGAAGCTGTCAAGGAAGAGTGCTCCAAACCCATGTCACCAATTGCTCAAAATCAGCAGAAAAATTCCCCACCAGAGGCCCAAATGTTAGTTCCATTGTGCCCAAAATGTGAAGAACCAGAAAGTTTGAAGCTTGATATGGAAGTGGTGGAATATTATTATTCTCCAAGTCCAAGGTCAACAGAGAAGGAAAAGAGTAGGAGGAGGAGGAGGAGGAGCAAGAGAAGTGTGCAGCAGCAGAGACATAGGAGAAAGATTCTTGGAGAGCTTGATGAGTTGGGTTTGGATGATCATGTGAAGGAGAACAATACAATGCCTTCAATCAGTGATAATATGGCCATGAAAGAGCATCTCAAGTCATGGGCTTATGCTGTTGCATGCACTGTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.49

Weight (kDa)

6.84

Isoelectric Point (pI)

101.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07390
prunus_persica Prupe.4G065900_v2.0.a1
pyrus_communis pycom05g27490
rosa_chinensis RchiOBHm_Chr5g0011501
rosa_laevigata RLG00000031841
rosa_multiflora Rmu_sc0009001.1_g000006 Rmu_sc0009975.1_g000026
rosa_roxburghii Rroxscaffold_1G00064950
rosa_samantha Rh5AG089200 Rh5BG084500 Rh5CG098200 Rh5DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 4 cut(s) 54, 89, 217, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 4 cut(s) 59, 95, 220, 355
AluI AGCT 4 cut(s) 59, 95, 220, 355
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 2, 322
AoxI GGCC 2 cut(s) 165, 423
ApeKI GCWGC 2 cut(s) 319, 322
ApoI RAATTY 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 71, 166
AsuHPI GGTGA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 191
BalI TGGCCA 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 331, 334
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 2, 322
BisI GCNGC 2 cut(s) 320, 323
BlsI GCNGC 2 cut(s) 321, 324
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 71, 166
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 2 cut(s) 12, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 12, 260
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 43
BseRI GAGGAG 6 cut(s) 20, 304, 307, 310, 313, 316
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 2 cut(s) 331, 334
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 167, 425
BsiHKAI GWGCWC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 2, 322
BsnI GGCC 2 cut(s) 167, 425
Bso31I GGTCTC 1 cut(s) 2
Bsp1286I GDGCHC 2 cut(s) 113, 191
Bsp143I GATC 1 cut(s) 376
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 2 cut(s) 167, 425
BspLI GGNNCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 12, 260
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 12, 260
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 55, 99
BstC8I GCNNGC 1 cut(s) 466
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 2 cut(s) 2, 322
BstMBI GATC 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 331, 334
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 167, 425
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 418, 468
Cac8I GCNNGC 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 71, 166
CviAII CATG 6 cut(s) 13, 121, 380, 427, 447, 465
CviJI RGCY 8 cut(s) 59, 82, 95, 167, 220, 355, 425, 452
CviKI_1 RGCY 8 cut(s) 59, 82, 95, 167, 220, 355, 425, 452
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 55, 99
EarI CTCTTC 2 cut(s) 55, 99
Eco130I CCWWGG 2 cut(s) 12, 260
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 12, 260
ErhI CCWWGG 2 cut(s) 12, 260
FaeI CATG 6 cut(s) 16, 124, 383, 430, 450, 468
FatI CATG 6 cut(s) 12, 120, 379, 426, 446, 464
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 320, 323
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 2 cut(s) 320, 323
GluI GCNGC 2 cut(s) 320, 323
HaeIII GGCC 2 cut(s) 167, 425
Hin1II CATG 6 cut(s) 16, 124, 383, 430, 450, 468
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 17, 343
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 476
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 3 cut(s) 268, 379, 414
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 3 cut(s) 319, 464, 468
Hsp92II CATG 6 cut(s) 16, 124, 383, 430, 450, 468
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 116, 303
LpnPI CCDG 4 cut(s) 10, 96, 174, 219
Lsp1109I GCAGC 2 cut(s) 331, 334
LweI GCATC 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 6 cut(s) 34, 37, 42, 101, 116, 212
MfeI CAATTG 2 cut(s) 75, 129
MhlI GDGCHC 2 cut(s) 113, 191
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 4 cut(s) 63, 75, 129, 151
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 6 cut(s) 157, 282, 285, 288, 291, 294
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 425
MunI CAATTG 2 cut(s) 75, 129
NcoI CCATGG 1 cut(s) 12
NdeII GATC 1 cut(s) 376
NlaIII CATG 6 cut(s) 16, 124, 383, 430, 450, 468
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 123
NspI RCATGY 1 cut(s) 468
PaeI GCATGC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 321, 324
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 71, 166
SatI GCNGC 2 cut(s) 320, 323
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 2 cut(s) 71, 166
SchI GAGTC 1 cut(s) 11
SduI GDGCHC 2 cut(s) 113, 191
SetI ASST 5 cut(s) 61, 97, 222, 266, 357
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 468
Sse9I AATT 4 cut(s) 63, 75, 129, 151
SspI AATATT 1 cut(s) 242
StyI CCWWGG 2 cut(s) 12, 260
TaaI ACNGT 1 cut(s) 472
TasI AATT 4 cut(s) 63, 75, 129, 151
TfiI GAWTC 1 cut(s) 343
TscAI CASTG 2 cut(s) 418, 475
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 2 cut(s) 319, 322
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 443
TspRI CASTG 2 cut(s) 418, 475
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.