Rh5BG084500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017620
Physical Location & Seq
Reverse (-)
7281400 .. 7282881
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG084500.1

Sequence Viewer

Length: 537 bp
ATGGAAAGGGTTATCATGGAGAGCTTAGACTCTCTCTGGTTCTATAGCAACGTCTTCTGTCCCAGAACCCCGGTTTCCGAATCGGGTGCTGCTAGTTTAACTAAGCGCGTTCAAGAAGAGCATGTAATTGAGGAGGTGTTGAAGCCGGTGTTGCCAATTGTTGAAGATCATAAGAATGGGTCGGAATCAGAGGCCGGGAATTTGGTTCCGGTCACACCCACGTGTGCTGAAGTTGGTATTACTCATGTGGATGATGTAGCAGAAGTGGTGGAATATTACTGTCCAAGTCCAAGTCCAAGAGAGAAGGAGCAGAGGAGGAAGAGGTCAAGAAGCAAGAGGGGTCTGCAGAGAAACAGGAGAAGGATTCTTGGTGAGCTTGATTTGGGTTTTCATGTGAAGGCAGAGGTTTCTGGGTGTGATTGGATTTTTCTGGAGGAGAATTTTGGGCATAAGAATCAGTTCAATCTCAATGATAATATGGCAATGAAGGAGCATCTCAAGACTTGGGCTTATGCTGTTGCTTGCACTGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

6.09

Isoelectric Point (pI)

70.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07390
prunus_persica Prupe.4G065900_v2.0.a1
pyrus_communis pycom05g27490
rosa_chinensis RchiOBHm_Chr5g0011501
rosa_laevigata RLG00000031841
rosa_multiflora Rmu_sc0009001.1_g000006 Rmu_sc0009975.1_g000026
rosa_roxburghii Rroxscaffold_1G00064950
rosa_samantha Rh5AG089200 Rh5BG084500 Rh5CG098200 Rh5DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AcsI RAATTY 2 cut(s) 199, 439
AcuI CTGAAG 1 cut(s) 249
AcvI CACGTG 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 4 cut(s) 113, 142, 164, 463
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 2 cut(s) 24, 376
AluI AGCT 2 cut(s) 24, 376
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 199, 439
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 108
AsuC2I CCSGG 2 cut(s) 71, 196
AsuHPI GGTGA 1 cut(s) 383
BbrPI CACGTG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BcnI CCSGG 2 cut(s) 71, 196
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 2 cut(s) 43, 344
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 71, 196
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 71, 196
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 2 cut(s) 71, 196
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 489
BseRI GAGGAG 3 cut(s) 146, 328, 449
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 194
BsiSI CCGG 4 cut(s) 71, 146, 195, 209
BslFI GGGAC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 281, 529
Bst6I CTCTTC 2 cut(s) 111, 314
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 25, 102
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 69, 194
BstSFI CTRYAG 2 cut(s) 43, 344
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 145
CviAII CATG 4 cut(s) 16, 122, 245, 392
CviJI RGCY 5 cut(s) 24, 145, 194, 376, 509
CviKI_1 RGCY 5 cut(s) 24, 145, 194, 376, 509
DdeI CTNAG 2 cut(s) 25, 102
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 111, 314
EarI CTCTTC 2 cut(s) 111, 314
Eco57I CTGAAG 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 222
FaeI CATG 4 cut(s) 19, 125, 248, 395
FaiI YATR 9 cut(s) 17, 45, 123, 171, 246, 393, 450, 479, 513
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 15, 121, 244, 391
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 1 cut(s) 194
HapII CCGG 4 cut(s) 71, 146, 195, 209
HhaI GCGC 1 cut(s) 108
Hin1II CATG 4 cut(s) 19, 125, 248, 395
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 5 cut(s) 29, 80, 185, 364, 454
HpaII CCGG 4 cut(s) 71, 146, 195, 209
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 4 cut(s) 79, 184, 190, 533
Hpy188III TCNNGA 4 cut(s) 113, 327, 431, 499
HpyAV CCTTC 4 cut(s) 298, 354, 391, 481
HpyCH4III ACNGT 2 cut(s) 281, 529
HpyCH4IV ACGT 2 cut(s) 51, 221
HpyCH4V TGCA 2 cut(s) 346, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 25, 102
HpySE526I ACGT 2 cut(s) 51, 221
Hsp92II CATG 4 cut(s) 19, 125, 248, 395
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 307, 490
LpnPI CCDG 9 cut(s) 22, 76, 84, 159, 208, 222, 340, 396, 416
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 51, 221
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 46, 128, 176, 331
MfeI CAATTG 1 cut(s) 156
MluCI AATT 4 cut(s) 126, 156, 199, 439
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 9 cut(s) 124, 127, 184, 306, 309, 315, 330, 397, 427
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 174, 220, 249
MspI CCGG 4 cut(s) 71, 146, 195, 209
MspR9I CCNGG 2 cut(s) 71, 196
MunI CAATTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 151
NciI CCSGG 2 cut(s) 71, 196
NdeII GATC 1 cut(s) 166
NlaIII CATG 4 cut(s) 19, 125, 248, 395
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 4 cut(s) 80, 185, 364, 454
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 222
PmlI CACGTG 1 cut(s) 222
PpsI GAGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 222
PspCI CACGTG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 348
RseI CAYNNNNRTG 3 cut(s) 174, 220, 249
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 71, 196
SetI ASST 7 cut(s) 26, 54, 138, 224, 326, 378, 408
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 2 cut(s) 43, 344
SmiMI CAYNNNNRTG 3 cut(s) 174, 220, 249
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 4 cut(s) 126, 156, 199, 439
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 69, 194
TaaI ACNGT 2 cut(s) 281, 529
TaiI ACGT 2 cut(s) 54, 224
TasI AATT 4 cut(s) 126, 156, 199, 439
TfiI GAWTC 4 cut(s) 80, 185, 364, 454
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 380, 500
TspRI CASTG 1 cut(s) 532
XapI RAATTY 2 cut(s) 199, 439
XceI RCATGY 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.