Rh5DG084500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017620
Physical Location & Seq
Reverse (-)
7400164 .. 7401644
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG084500.1

Sequence Viewer

Length: 531 bp
ATGGAAAGGGTTATCATGGAGAGCTTGGACTCTCTCTGGTTCTATAGCAACGTCTTCTGTCCCCGAGCCCCTGTTTCGGAATCGGGTGCTGCTAGTTTAACTAAGCGCGTTCAAGAAGAGCATGTAATTGAGGGGGTGTTGAAGCCGGTGTTGCCAATTGTTGAAGATCATAAGAATGAGTCGGAACCAGAGGCCGGGAATTTGGTTCCGGTCACACCCAGATGTGCTGAAGTTGGTATTACTCATGTGGATGATGTAGCAGAAGTGATGGAAGATTACTGTCCAAGTCCAAGAGAGAAGGAACAGAGGAGGAAGAGGTCAAGAAGCAGGAGGGGTCTGCAGAGAAACAGGAGAAGGATTCTAGGTGAGATTGATTTGGGTTTTCATGTGAAGGCAGAGGCTTCTGGGTGTGATTGGATTTTTCTGGAGGAGAATTTTGGGTATAAGAATCAGTTCAATCTCAATGATAATATGGCAATGAAGGAGCATCTCAGGACTTGGGCTTATGCTGTTGCTTGCACTGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.23

Weight (kDa)

6.0

Isoelectric Point (pI)

71.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07390
prunus_persica Prupe.4G065900_v2.0.a1
pyrus_communis pycom05g27490
rosa_chinensis RchiOBHm_Chr5g0011501
rosa_laevigata RLG00000031841
rosa_multiflora Rmu_sc0009001.1_g000006 Rmu_sc0009975.1_g000026
rosa_roxburghii Rroxscaffold_1G00064950
rosa_samantha Rh5AG089200 Rh5BG084500 Rh5CG098200 Rh5DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AcsI RAATTY 2 cut(s) 199, 433
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 76, 194
AgsI TTSAA 4 cut(s) 113, 142, 164, 457
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 199, 433
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 63
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 262
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 2 cut(s) 93, 362
BfmI CTRYAG 2 cut(s) 43, 338
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 186, 207
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 194
Bse118I RCCGGY 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 483
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 76, 194
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 322, 443
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 146, 195, 209
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 76, 194
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 504
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 186, 207
BspMAI CTGCAG 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 281, 523
Bst6I CTCTTC 2 cut(s) 111, 308
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 102, 491
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 2 cut(s) 43, 338
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 517
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 145
CviAII CATG 4 cut(s) 16, 122, 245, 386
CviJI RGCY 6 cut(s) 24, 68, 145, 194, 401, 503
CviKI_1 RGCY 6 cut(s) 24, 68, 145, 194, 401, 503
DdeI CTNAG 2 cut(s) 102, 491
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 111, 308
EarI CTCTTC 2 cut(s) 111, 308
Eco24I GRGCYC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 4 cut(s) 19, 125, 248, 389
FaiI YATR 9 cut(s) 17, 45, 123, 171, 246, 387, 444, 473, 507
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 15, 121, 244, 385
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 2 cut(s) 93, 362
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 146, 195, 209
HhaI GCGC 1 cut(s) 108
Hin1II CATG 4 cut(s) 19, 125, 248, 389
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 5 cut(s) 29, 80, 179, 358, 448
HpaII CCGG 3 cut(s) 146, 195, 209
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 79, 184, 527
Hpy188III TCNNGA 4 cut(s) 113, 321, 425, 493
HpyAV CCTTC 4 cut(s) 292, 348, 385, 475
HpyCH4III ACNGT 2 cut(s) 281, 523
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 340, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 102, 491
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 4 cut(s) 19, 125, 248, 389
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 93, 362
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 5 cut(s) 46, 128, 176, 284, 325
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 4 cut(s) 126, 156, 199, 433
MlyI GAGTC 2 cut(s) 23, 188
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 124, 184, 300, 303, 309, 324, 391, 421
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 174, 220, 249
MspI CCGG 3 cut(s) 146, 195, 209
MspR9I CCNGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 196
NdeII GATC 1 cut(s) 166
NlaIII CATG 4 cut(s) 19, 125, 248, 389
NlaIV GGNNCC 2 cut(s) 186, 207
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 3 cut(s) 80, 358, 448
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 2 cut(s) 23, 187
PpsI GAGTC 2 cut(s) 23, 187
PspN4I GGNNCC 2 cut(s) 186, 207
PstI CTGCAG 1 cut(s) 342
RseI CAYNNNNRTG 3 cut(s) 174, 220, 249
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 2 cut(s) 23, 188
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 26, 54, 320, 367
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 2 cut(s) 43, 338
SmiMI CAYNNNNRTG 3 cut(s) 174, 220, 249
Sse9I AATT 4 cut(s) 126, 156, 199, 433
SspMI CTAG 2 cut(s) 93, 362
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 281, 523
TaiI ACGT 1 cut(s) 54
TasI AATT 4 cut(s) 126, 156, 199, 433
TfiI GAWTC 3 cut(s) 80, 358, 448
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 374, 494
TspRI CASTG 1 cut(s) 526
XapI RAATTY 2 cut(s) 199, 433
XceI RCATGY 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 2 cut(s) 93, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.