Rroxscaffold_1G00064950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017620
Physical Location & Seq
Forward (+)
86757064 .. 86757579
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064950.1

Sequence Viewer

Length: 516 bp
ATGGAGAGCTTAGACTCTCTCTGGTTCTATAGCAACGTCTTCTCTCCCAGAACCCCGGTTTCGGAATCGGGTGCTGCTAGTTTAACTAAGCGCGTTCAAGAAGAGCATGCAATTGAGGAGGTGTTGAAGCCGGTGTTGCCAATTGTTGAAGATCATAAGAATGAGTCGGAATCAGAGGCCGGGAATTTGGTTCCGGTCACACCCAGATGTGCTGAAGTTGGTATTACTCATGTGGATGATGTGGCAGAAGTGGTGGAATATTACTGTCCAAGTCCAAGAGAGAAGGAACAGAGGAGGAAGAGGTCAAGAAGCAAGAGGGGTCTGCAGAGAAACAGGAGAAGGATTCTTGGTGAGCTTGATTTGGGTTTTCATGTGAAGGCAGAGGTTTCTGGGTGTGATTGGATTTTTCTGGAGGAGAATTTTGGGTATAAGAATCAGTTCAATCTCAATGATAATATGGCAATGAAGGAGCATCTCAAGACTTGGGCTTATGCTGTTGCTTGCACTGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.64

Weight (kDa)

5.99

Isoelectric Point (pI)

69.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07390
prunus_persica Prupe.4G065900_v2.0.a1
pyrus_communis pycom05g27490
rosa_chinensis RchiOBHm_Chr5g0011501
rosa_laevigata RLG00000031841
rosa_multiflora Rmu_sc0009001.1_g000006 Rmu_sc0009975.1_g000026
rosa_roxburghii Rroxscaffold_1G00064950
rosa_samantha Rh5AG089200 Rh5BG084500 Rh5CG098200 Rh5DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AcsI RAATTY 2 cut(s) 184, 418
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 4 cut(s) 98, 127, 149, 442
AluBI AGCT 2 cut(s) 9, 355
AluI AGCT 2 cut(s) 9, 355
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 184, 418
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 93
AsuC2I CCSGG 2 cut(s) 56, 181
AsuHPI GGTGA 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 61
BcnI CCSGG 2 cut(s) 56, 181
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 28, 323
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 56, 181
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 56, 181
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 2 cut(s) 56, 181
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 468
BseRI GAGGAG 3 cut(s) 131, 307, 428
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 4 cut(s) 56, 131, 180, 194
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 179
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 327
BspQI GCTCTTC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 266, 508
Bst6I CTCTTC 2 cut(s) 96, 293
BstC8I GCNNGC 2 cut(s) 108, 502
BstDEI CTNAG 2 cut(s) 10, 87
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 54, 179
BstSFI CTRYAG 2 cut(s) 28, 323
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 108, 502
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 130
CviAII CATG 3 cut(s) 107, 230, 371
CviJI RGCY 5 cut(s) 9, 130, 179, 355, 488
CviKI_1 RGCY 5 cut(s) 9, 130, 179, 355, 488
DdeI CTNAG 2 cut(s) 10, 87
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 96, 293
EarI CTCTTC 2 cut(s) 96, 293
Eco57I CTGAAG 1 cut(s) 234
FaeI CATG 3 cut(s) 110, 233, 374
FaiI YATR 8 cut(s) 30, 108, 156, 231, 372, 429, 458, 492
FatI CATG 3 cut(s) 106, 229, 370
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 1 cut(s) 179
HapII CCGG 4 cut(s) 56, 131, 180, 194
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 110, 233, 374
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 6 cut(s) 14, 65, 164, 170, 343, 433
HpaII CCGG 4 cut(s) 56, 131, 180, 194
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 4 cut(s) 64, 169, 175, 512
Hpy188III TCNNGA 4 cut(s) 98, 306, 410, 478
HpyAV CCTTC 4 cut(s) 277, 333, 370, 460
HpyCH4III ACNGT 2 cut(s) 266, 508
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 110, 325, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 2 cut(s) 10, 87
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 110, 233, 374
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 4 cut(s) 31, 113, 161, 310
MfeI CAATTG 2 cut(s) 111, 141
MluCI AATT 4 cut(s) 111, 141, 184, 418
MlyI GAGTC 2 cut(s) 8, 173
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 9 cut(s) 109, 112, 169, 285, 288, 294, 309, 376, 406
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 3 cut(s) 159, 205, 234
MspI CCGG 4 cut(s) 56, 131, 180, 194
MspR9I CCNGG 2 cut(s) 56, 181
MunI CAATTG 2 cut(s) 111, 141
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 136
NciI CCSGG 2 cut(s) 56, 181
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 110, 233, 374
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 4 cut(s) 65, 170, 343, 433
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 8, 172
PpsI GAGTC 2 cut(s) 8, 172
PspN4I GGNNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 327
RseI CAYNNNNRTG 3 cut(s) 159, 205, 234
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 2 cut(s) 8, 173
ScrFI CCNGG 2 cut(s) 56, 181
SetI ASST 6 cut(s) 11, 39, 123, 305, 357, 387
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 2 cut(s) 28, 323
SmiMI CAYNNNNRTG 3 cut(s) 159, 205, 234
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 110
Sse9I AATT 4 cut(s) 111, 141, 184, 418
SspI AATATT 1 cut(s) 260
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 54, 179
TaaI ACNGT 2 cut(s) 266, 508
TaiI ACGT 1 cut(s) 39
TasI AATT 4 cut(s) 111, 141, 184, 418
TfiI GAWTC 4 cut(s) 65, 170, 343, 433
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 359, 479
TspRI CASTG 1 cut(s) 511
XapI RAATTY 2 cut(s) 184, 418
XceI RCATGY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.