Rh5AG089200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017620
Physical Location & Seq
Reverse (-)
7940527 .. 7942000
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG089200.1

Sequence Viewer

Length: 525 bp
ATGGAAAGGGTTATCATGGAGAGCTTGGACTCTCTCTGGTTCTATAGCAACGTCTTCTGTCCCCGAACCCCGGTTTCGGAATCGGGTGCTGCTAGTTTAACTAAACGCGTTCAAGAAGAACATGTAATTGAGGAGGTGTTGAAGCCGGTGTTGCCAATTGTTGAAGATCATAAGAATGAGTCAGAGGCCGGGAATTTGGTTCCGGTCACACCCAGATGTGCTGAAGTTGGTATTACTCATGTGGATGATGTAGCAGAAGTGGTGGAATATTACTGTCCAAGTCCAAGAGAGAAGGAACAGAGGAGGAAGAGGTCAAGAAGCAAGAGGGGTCTGCAGAGAAACAGGAGAAGGATTCTTGGTGAGATTGATTTGGGTTTTCATGTGAAGGCAGAGGTTTCTGGGCGTGATTGGATTTTTCTGGAGGAGAATTTTGGGTATAAGAATCAGTTCAATCTCAATGATAATATGGCAATGAAGGAGCATCTCAGGACTTGGGCTTATGCTGTTGCTTGCACTGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.18

Weight (kDa)

6.54

Isoelectric Point (pI)

66.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07390
prunus_persica Prupe.4G065900_v2.0.a1
pyrus_communis pycom05g27490
rosa_chinensis RchiOBHm_Chr5g0011501
rosa_laevigata RLG00000031841
rosa_multiflora Rmu_sc0009001.1_g000006 Rmu_sc0009975.1_g000026
rosa_roxburghii Rroxscaffold_1G00064950
rosa_samantha Rh5AG089200 Rh5BG084500 Rh5CG098200 Rh5DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AcsI RAATTY 2 cut(s) 193, 427
AcuI CTGAAG 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 70, 76
AflIII ACRYGT 2 cut(s) 106, 121
AgsI TTSAA 4 cut(s) 113, 142, 164, 451
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 193, 427
Asp700I GAANNNNTTC 1 cut(s) 446
AsuC2I CCSGG 2 cut(s) 71, 190
AsuHPI GGTGA 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 76
BcnI CCSGG 2 cut(s) 71, 190
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 2 cut(s) 43, 332
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 71, 190
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 71, 190
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 71, 190
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 76
Bse118I RCCGGY 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 70, 76
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 499
BseRI GAGGAG 3 cut(s) 146, 316, 437
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 188
BsiSI CCGG 4 cut(s) 71, 146, 189, 203
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 70, 76
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 498
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 275, 517
Bst6I CTCTTC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 69, 188
BstSFI CTRYAG 2 cut(s) 43, 332
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 145
CviAII CATG 4 cut(s) 16, 122, 239, 380
CviJI RGCY 4 cut(s) 24, 145, 188, 497
CviKI_1 RGCY 4 cut(s) 24, 145, 188, 497
DdeI CTNAG 1 cut(s) 485
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 4 cut(s) 19, 125, 242, 383
FaiI YATR 9 cut(s) 17, 45, 123, 171, 240, 381, 438, 467, 501
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 15, 121, 238, 379
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 1 cut(s) 188
HapII CCGG 4 cut(s) 71, 146, 189, 203
Hin1II CATG 4 cut(s) 19, 125, 242, 383
HinfI GANTC 5 cut(s) 29, 80, 179, 352, 442
HpaII CCGG 4 cut(s) 71, 146, 189, 203
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 79, 184, 521
Hpy188III TCNNGA 4 cut(s) 113, 315, 419, 487
HpyAV CCTTC 4 cut(s) 286, 342, 379, 469
HpyCH4III ACNGT 2 cut(s) 275, 517
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 334, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 4 cut(s) 19, 125, 242, 383
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 46, 128, 176, 319
MfeI CAATTG 1 cut(s) 156
MluCI AATT 4 cut(s) 126, 156, 193, 427
MluI ACGCGT 1 cut(s) 106
MlyI GAGTC 2 cut(s) 23, 188
MnlI CCTC 9 cut(s) 124, 127, 178, 294, 297, 303, 318, 385, 415
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 174, 214, 243
MspI CCGG 4 cut(s) 71, 146, 189, 203
MspR9I CCNGG 2 cut(s) 71, 190
MunI CAATTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 151
NciI CCSGG 2 cut(s) 71, 190
NdeII GATC 1 cut(s) 166
NlaIII CATG 4 cut(s) 19, 125, 242, 383
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 125
PciI ACATGT 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 3 cut(s) 80, 352, 442
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 2 cut(s) 23, 187
PpsI GAGTC 2 cut(s) 23, 187
PscI ACATGT 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 201
PstI CTGCAG 1 cut(s) 336
RseI CAYNNNNRTG 3 cut(s) 174, 214, 243
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 2 cut(s) 23, 188
ScrFI CCNGG 2 cut(s) 71, 190
SetI ASST 5 cut(s) 26, 54, 138, 314, 396
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 43, 332
SmiMI CAYNNNNRTG 3 cut(s) 174, 214, 243
Sse9I AATT 4 cut(s) 126, 156, 193, 427
SspI AATATT 1 cut(s) 269
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 69, 188
TaaI ACNGT 2 cut(s) 275, 517
TaiI ACGT 1 cut(s) 54
TasI AATT 4 cut(s) 126, 156, 193, 427
TfiI GAWTC 3 cut(s) 80, 352, 442
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 368, 488
TspRI CASTG 1 cut(s) 520
XapI RAATTY 2 cut(s) 193, 427
XceI RCATGY 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.