Rmu_sc0009975.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009975.1
OG0017620
Physical Location & Seq
Reverse (-)
127465 .. 127986
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009975.1_g000026.1.cds

Sequence Viewer

Length: 522 bp
atggaaagggttatcatggagagcttggactctctctggttctatagcaacgtcttctgtcccagaaccctggtttcggaatcgggtgctgctaagcgcgttcaagaagagcatgtaattgaggaggtgttgaagccggtgttgccaattgttgaagatcataagaatgagtcggaatcagaggccgggaatttggttccggtcacacccagatgtgctgaagttggtattactcatgtggatgatgtagcagaagtggtggaagattactgtccaagtccaatagagaaggaacagaggaggaagaggtcaagaagcaggaggggtctgcagagaaacaggagaaggattcttggtgagattgatttgggttttcatgtgaaggcagaggtttctgggcgtgattggatttttctggaggagaattttgggtataagaatcagttcaatctcaatgataatatggcaatgaaggagcatctcaggacttgggcttatgctgttgcttgcactgtcagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.04

Weight (kDa)

5.8

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07390
prunus_persica Prupe.4G065900_v2.0.a1
pyrus_communis pycom05g27490
rosa_chinensis RchiOBHm_Chr5g0011501
rosa_laevigata RLG00000031841
rosa_multiflora Rmu_sc0009001.1_g000006 Rmu_sc0009975.1_g000026
rosa_roxburghii Rroxscaffold_1G00064950
rosa_samantha Rh5AG089200 Rh5BG084500 Rh5CG098200 Rh5DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AcsI RAATTY 2 cut(s) 190, 424
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 4 cut(s) 104, 133, 155, 448
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 190, 424
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 187
BfmI CTRYAG 2 cut(s) 43, 329
BisI GCNGC 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 71, 187
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 71, 187
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 496
BseRI GAGGAG 3 cut(s) 137, 313, 434
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 3 cut(s) 137, 186, 200
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 157
Bsp1720I GCTNAGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 495
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 333
BspQI GCTCTTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 272, 514
Bst6I CTCTTC 2 cut(s) 102, 299
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 93, 482
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 69, 185
BstSFI CTRYAG 2 cut(s) 43, 329
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 508
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 136
CviAII CATG 4 cut(s) 16, 113, 236, 377
CviJI RGCY 4 cut(s) 24, 136, 185, 494
CviKI_1 RGCY 4 cut(s) 24, 136, 185, 494
DdeI CTNAG 2 cut(s) 93, 482
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 102, 299
EarI CTCTTC 2 cut(s) 102, 299
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 19, 116, 239, 380
FaiI YATR 9 cut(s) 17, 45, 114, 162, 237, 378, 435, 464, 498
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 15, 112, 235, 376
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 1 cut(s) 185
HapII CCGG 3 cut(s) 137, 186, 200
HhaI GCGC 1 cut(s) 99
Hin1II CATG 4 cut(s) 19, 116, 239, 380
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 6 cut(s) 29, 80, 170, 176, 349, 439
HpaII CCGG 3 cut(s) 137, 186, 200
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 4 cut(s) 79, 175, 181, 518
Hpy188III TCNNGA 4 cut(s) 104, 312, 416, 484
HpyAV CCTTC 4 cut(s) 283, 339, 376, 466
HpyCH4III ACNGT 2 cut(s) 272, 514
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 331, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 93, 482
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 4 cut(s) 19, 116, 239, 380
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 475
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 487
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 5 cut(s) 46, 119, 167, 275, 316
MfeI CAATTG 1 cut(s) 147
MluCI AATT 4 cut(s) 117, 147, 190, 424
MlyI GAGTC 2 cut(s) 23, 179
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 9 cut(s) 115, 118, 175, 291, 294, 300, 315, 382, 412
MroXI GAANNNNTTC 1 cut(s) 443
MslI CAYNNNNRTG 3 cut(s) 165, 211, 240
MspI CCGG 3 cut(s) 137, 186, 200
MspR9I CCNGG 2 cut(s) 71, 187
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 187
NdeII GATC 1 cut(s) 157
NlaIII CATG 4 cut(s) 19, 116, 239, 380
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 4 cut(s) 80, 176, 349, 439
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 2 cut(s) 23, 178
PpsI GAGTC 2 cut(s) 23, 178
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 333
RseI CAYNNNNRTG 3 cut(s) 165, 211, 240
SapI GCTCTTC 1 cut(s) 102
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 2 cut(s) 23, 179
ScrFI CCNGG 2 cut(s) 71, 187
SetI ASST 5 cut(s) 26, 54, 129, 311, 393
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 2 cut(s) 43, 329
SmiMI CAYNNNNRTG 3 cut(s) 165, 211, 240
Sse9I AATT 4 cut(s) 117, 147, 190, 424
StyD4I CCNGG 2 cut(s) 69, 185
TaaI ACNGT 2 cut(s) 272, 514
TaiI ACGT 1 cut(s) 54
TasI AATT 4 cut(s) 117, 147, 190, 424
TfiI GAWTC 4 cut(s) 80, 176, 349, 439
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 365, 485
TspRI CASTG 1 cut(s) 517
XapI RAATTY 2 cut(s) 190, 424
XceI RCATGY 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.