Prupe.4G078600_v2.0.a1

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016781
Physical Location & Seq
Forward (+)
3818618 .. 3819438
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G078600.1

Sequence Viewer

Length: 579 bp
ATGAGTCACTGTCAGCCGAAATATCGGCGAGTCATGCCGGCGGCGACAACAAAGCTCCGAGAAATAGAAGTGATGATAATCTCGGCGCAAGACCTGAAGAACGTGAAGCACGTGACGCAGGTAAGAGCGTACGCGGTGGTGTACGTGGAGAAGGAATACCACGCTGCAAGGACGGGCGTGGACGAGCAGGGCGGGACCAGCCCCACGTGGAACGAGGTCGTCAAGGTGAAGTTCCGGGAGGACCTGCTGGAGAACGACGTGCTAGCGGCGCTGAACGTGGACATCTACGCGCAAGGGCGCGTGAGGGAGAAGCCGGTGGGCAGCGCCAGGGTGCTGCTGTGCGACGTTTTGAAGGGCGGGGACGAGCGGGAGCCGGCGGATAATCCAGTGCAGTGCATGACGGTGCAAGTGTGGAGGCCGTCTGGTAGGCCCCACGGGCTGCTGAACCTGTGGGTCCCGCCGACAGGGAGGTTCTTGATGAGGAGGGAGTCTTTATCGTTTAGTGCGAGGGAAGCGGTGGACGGTGAAGAGGTGGAGGTGGAAGAGGAGCCTGTGGTGAAAGGTGGCGAGGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

193

Amino Acids

21.55

Weight (kDa)

5.68

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016781)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05810
malus_domestica MD05G1286300.v1.1
prunus_persica Prupe.4G078600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013681
rosa_laevigata RLG00000032040
rosa_multiflora Rmu_co8348725.1_g000001 Rmu_sc0002573.1_g000004
rosa_roxburghii Rroxscaffold_1G00062920
rosa_rugosa Rorug05G0012200
rosa_samantha Rh5AG106600 Rh5BG102700 Rh5CG114600 Rh5DG101400
rosa_wichuraiana Rw5G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 109, 252
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 3 cut(s) 134, 290, 300
AciI CCGC 9 cut(s) 41, 134, 192, 266, 357, 367, 377, 458, 515
AcuI CTGAAG 1 cut(s) 116
AcvI CACGTG 2 cut(s) 112, 207
AfaI GTAC 2 cut(s) 131, 143
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 1 cut(s) 352
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AoxI GGCC 2 cut(s) 416, 428
ApeKI GCWGC 4 cut(s) 164, 321, 334, 439
AspLEI GCGC 5 cut(s) 88, 271, 292, 300, 326
AspS9I GGNCC 4 cut(s) 195, 241, 429, 454
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 238, 536, 568
AsuNHI GCTAGC 1 cut(s) 262
AvaII GGWCC 3 cut(s) 195, 241, 454
BbrPI CACGTG 2 cut(s) 112, 207
BbvI GCAGC 4 cut(s) 151, 321, 333, 426
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 236
BfaI CTAG 1 cut(s) 263
BfoI RGCGCY 2 cut(s) 272, 327
BfuAI ACCTGC 2 cut(s) 109, 252
BglI GCCNNNNNGGC 1 cut(s) 436
BisI GCNGC 6 cut(s) 42, 165, 267, 322, 335, 440
BlsI GCNGC 6 cut(s) 43, 166, 268, 323, 336, 441
Bme1390I CCNGG 2 cut(s) 236, 328
Bme18I GGWCC 3 cut(s) 195, 241, 454
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 4 cut(s) 195, 241, 429, 454
BmiI GGNNCC 6 cut(s) 196, 372, 431, 455, 456, 549
BmrFI CCNGG 2 cut(s) 236, 328
BmtI GCTAGC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 236
BsaAI YACGTR 3 cut(s) 112, 145, 207
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 327, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 3 cut(s) 37, 313, 373
Bse1I ACTGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 327, 433
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 2 cut(s) 496, 560
BseXI GCAGC 4 cut(s) 151, 321, 333, 426
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 3 cut(s) 134, 290, 300
BshFI GGCC 2 cut(s) 418, 430
BsiSI CCGG 4 cut(s) 38, 235, 314, 374
BsiWI CGTACG 1 cut(s) 129
BslFI GGGAC 3 cut(s) 208, 374, 440
BslI CCNNNNNNNGG 1 cut(s) 464
BsmFI GGGAC 3 cut(s) 208, 374, 440
BsnI GGCC 2 cut(s) 418, 430
BspACI CCGC 9 cut(s) 41, 134, 192, 266, 357, 367, 377, 458, 515
BspANI GGCC 2 cut(s) 418, 430
BspFNI CGCG 3 cut(s) 134, 290, 300
BspLI GGNNCC 6 cut(s) 196, 372, 431, 455, 456, 549
BspMI ACCTGC 2 cut(s) 109, 252
BspOI GCTAGC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 367
BsrFI RCCGGY 3 cut(s) 37, 313, 373
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 3 cut(s) 37, 313, 373
BssECI CCNNGG 2 cut(s) 327, 433
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 11, 403, 524
Bst6I CTCTTC 2 cut(s) 522, 537
BstBAI YACGTR 3 cut(s) 112, 145, 207
BstC8I GCNNGC 3 cut(s) 39, 264, 375
BstDSI CCRYGG 1 cut(s) 433
BstFNI CGCG 3 cut(s) 134, 290, 300
BstH2I RGCGCY 2 cut(s) 272, 327
BstHHI GCGC 5 cut(s) 88, 271, 292, 300, 326
BstMWI GCNNNNNNNGC 6 cut(s) 34, 115, 198, 268, 436, 512
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 234, 326
BstUI CGCG 3 cut(s) 134, 290, 300
BstV1I GCAGC 4 cut(s) 151, 321, 333, 426
BsuRI GGCC 2 cut(s) 418, 430
BtgI CCRYGG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 3 cut(s) 7, 393, 398
BveI ACCTGC 2 cut(s) 109, 252
Cac8I GCNNGC 3 cut(s) 39, 264, 375
CfoI GCGC 5 cut(s) 88, 271, 292, 300, 326
Cfr10I RCCGGY 3 cut(s) 37, 313, 373
Cfr13I GGNCC 4 cut(s) 195, 241, 429, 454
CseI GACGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 130, 142
CviAII CATG 2 cut(s) 34, 397
CviJI RGCY 9 cut(s) 16, 55, 201, 313, 373, 418, 430, 439, 550
CviKI_1 RGCY 9 cut(s) 16, 55, 201, 313, 373, 418, 430, 439, 550
CviQI GTAC 2 cut(s) 130, 142
Eam1104I CTCTTC 2 cut(s) 522, 537
EarI CTCTTC 2 cut(s) 522, 537
EciI GGCGGA 1 cut(s) 392
Eco47I GGWCC 3 cut(s) 195, 241, 454
Eco57I CTGAAG 1 cut(s) 116
Eco72I CACGTG 2 cut(s) 112, 207
EcoO109I RGGNCCY 3 cut(s) 241, 429, 454
EcoRII CCWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 37, 400
FaiI YATR 3 cut(s) 35, 398, 577
FaqI GGGAC 3 cut(s) 208, 374, 440
FatI CATG 2 cut(s) 33, 396
FauI CCCGC 4 cut(s) 185, 350, 360, 465
Fnu4HI GCNGC 6 cut(s) 42, 165, 267, 322, 335, 440
Fsp4HI GCNGC 6 cut(s) 42, 165, 267, 322, 335, 440
FspBI CTAG 1 cut(s) 263
GlaI GCGC 5 cut(s) 87, 270, 291, 299, 325
GluI GCNGC 6 cut(s) 42, 165, 267, 322, 335, 440
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 2 cut(s) 272, 327
HaeIII GGCC 2 cut(s) 418, 430
HapII CCGG 4 cut(s) 38, 235, 314, 374
HgaI GACGC 1 cut(s) 124
HhaI GCGC 5 cut(s) 88, 271, 292, 300, 326
Hin1II CATG 2 cut(s) 37, 400
Hin6I GCGC 5 cut(s) 86, 269, 290, 298, 324
HinP1I GCGC 5 cut(s) 86, 269, 290, 298, 324
HinfI GANTC 3 cut(s) 4, 30, 488
HpaII CCGG 4 cut(s) 38, 235, 314, 374
HphI GGTGA 3 cut(s) 238, 536, 568
Hpy166II GTNNAC 4 cut(s) 142, 181, 280, 520
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 475
Hpy8I GTNNAC 4 cut(s) 142, 181, 280, 520
Hpy99I CGWCG 2 cut(s) 260, 347
HpyAV CCTTC 2 cut(s) 145, 346
HpyCH4III ACNGT 3 cut(s) 11, 403, 524
HpyCH4IV ACGT 7 cut(s) 102, 111, 144, 206, 258, 276, 345
HpyCH4V TGCA 4 cut(s) 167, 391, 396, 406
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 115, 198, 268, 436, 512
HpySE526I ACGT 7 cut(s) 102, 111, 144, 206, 258, 276, 345
Hsp92II CATG 2 cut(s) 37, 400
HspAI GCGC 5 cut(s) 86, 269, 290, 298, 324
KflI GGGWCCC 1 cut(s) 454
KroI GCCGGC 2 cut(s) 37, 373
KroNI GCCGGC 2 cut(s) 39, 375
LmnI GCTCC 3 cut(s) 60, 370, 547
Lsp1109I GCAGC 4 cut(s) 151, 321, 333, 426
MaeI CTAG 1 cut(s) 263
MaeII ACGT 7 cut(s) 102, 111, 144, 206, 258, 276, 345
MaeIII GTNAC 2 cut(s) 5, 112
MbiI CCGCTC 1 cut(s) 367
MboII GAAGA 3 cut(s) 109, 539, 554
MlyI GAGTC 3 cut(s) 13, 39, 497
MroNI GCCGGC 2 cut(s) 37, 373
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 4 cut(s) 38, 235, 314, 374
MspR9I CCNGG 2 cut(s) 236, 328
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 3 cut(s) 134, 290, 300
MwoI GCNNNNNNNGC 6 cut(s) 34, 115, 198, 268, 436, 512
NaeI GCCGGC 2 cut(s) 39, 375
NciI CCSGG 1 cut(s) 236
NgoMIV GCCGGC 2 cut(s) 37, 373
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 2 cut(s) 37, 400
NlaIV GGNNCC 6 cut(s) 196, 372, 431, 455, 456, 549
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 5, 112
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 503
PdiI GCCGGC 2 cut(s) 39, 375
Pfl23II CGTACG 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 6 cut(s) 43, 166, 268, 323, 336, 441
PleI GAGTC 3 cut(s) 12, 38, 496
PmaCI CACGTG 2 cut(s) 112, 207
PmlI CACGTG 2 cut(s) 112, 207
PpsI GAGTC 3 cut(s) 12, 38, 496
Ppu21I YACGTR 3 cut(s) 112, 145, 207
PpuMI RGGWCCY 2 cut(s) 241, 454
Psp5II RGGWCCY 2 cut(s) 241, 454
Psp6I CCWGG 1 cut(s) 326
PspCI CACGTG 2 cut(s) 112, 207
PspGI CCWGG 1 cut(s) 326
PspLI CGTACG 1 cut(s) 129
PspN4I GGNNCC 6 cut(s) 196, 372, 431, 455, 456, 549
PspPI GGNCC 4 cut(s) 195, 241, 429, 454
PspPPI RGGWCCY 2 cut(s) 241, 454
RsaI GTAC 2 cut(s) 131, 143
RsaNI GTAC 2 cut(s) 130, 142
RseI CAYNNNNRTG 1 cut(s) 401
SatI GCNGC 6 cut(s) 42, 165, 267, 322, 335, 440
Sau96I GGNCC 4 cut(s) 195, 241, 429, 454
SchI GAGTC 3 cut(s) 13, 39, 497
ScrFI CCNGG 2 cut(s) 236, 328
SinI GGWCC 3 cut(s) 195, 241, 454
SmiMI CAYNNNNRTG 1 cut(s) 401
SsiI CCGC 9 cut(s) 41, 134, 192, 266, 357, 367, 377, 458, 515
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 234, 326
TaaI ACNGT 3 cut(s) 11, 403, 524
TaiI ACGT 7 cut(s) 105, 114, 147, 209, 261, 279, 348
TauI GCSGC 2 cut(s) 44, 269
TscAI CASTG 3 cut(s) 14, 393, 398
TseFI GTSAC 2 cut(s) 5, 112
TseI GCWGC 4 cut(s) 164, 321, 334, 439
Tsp45I GTSAC 2 cut(s) 5, 112
TspRI CASTG 3 cut(s) 14, 393, 398
VpaK11BI GGWCC 3 cut(s) 195, 241, 454
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.