Rh5CG114600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016781
Physical Location & Seq
Forward (+)
9382996 .. 9383501
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG114600.1

Sequence Viewer

Length: 381 bp
ATGAACCAAGTAGTTGAATTCCGGAGAAGGAGCAAGACGGCGGCGGCGGCCAAGCTCCGAGAGATAGAGGTCCTGATAATCTCGGCGCAAGACCTCAAGGACGTGAAGCACGGAGGAGATGGCGGACAAGGAGCACGTGCTGGCGGCGGTGAACGTGGACATCTACGCTCACGGGCACGTGAGGGAGAAGCCGGTGGGGAGAGCCAGGGTGCTGTTGTGCGACGTTTTGAAGGGCGGCGACGCCCGAGAGCCGGCGGACAATCCGATACAGTGCTTGACGGTGCAGGTGTGGAGGCCGTCCGGGAGGCCTCAGGGGCTGCTCAACCTGTGGGTCCCGCCCACCGGGAGGTTCTTGATAAGGAGGGAGTCGCTGTCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.17

Weight (kDa)

10.1

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016781)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05810
malus_domestica MD05G1286300.v1.1
prunus_persica Prupe.4G078600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013681
rosa_laevigata RLG00000032040
rosa_multiflora Rmu_co8348725.1_g000001 Rmu_sc0002573.1_g000004
rosa_roxburghii Rroxscaffold_1G00062920
rosa_rugosa Rorug05G0012200
rosa_samantha Rh5AG106600 Rh5BG102700 Rh5CG114600 Rh5DG101400
rosa_wichuraiana Rw5G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 9 cut(s) 41, 44, 47, 123, 144, 147, 235, 255, 336
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 17
AcvI CACGTG 2 cut(s) 137, 179
AcyI GRCGYC 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 251, 342, 346
AgsI TTSAA 2 cut(s) 17, 230
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 3 cut(s) 48, 294, 306
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 70, 332
AsuC2I CCSGG 2 cut(s) 302, 344
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 70, 332
AxyI CCTNAGG 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 178
BbrPI CACGTG 2 cut(s) 137, 179
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 113
BceAI ACGGC 2 cut(s) 54, 281
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 302, 344
BfuAI ACCTGC 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 6 cut(s) 42, 45, 48, 145, 236, 318
BlsI GCNGC 6 cut(s) 43, 46, 49, 146, 237, 319
Bme1390I CCNGG 3 cut(s) 206, 302, 344
Bme18I GGWCC 2 cut(s) 70, 332
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 70, 332
BmiI GGNNCC 2 cut(s) 333, 334
BmrFI CCNGG 3 cut(s) 206, 302, 344
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 302, 344
BsaAI YACGTR 2 cut(s) 137, 179
BsaHI GRCGYC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 342, 346
Bse118I RCCGGY 2 cut(s) 191, 251
Bse21I CCTNAGG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 3 cut(s) 251, 342, 346
BseMII CTCAG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 3 cut(s) 50, 296, 308
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 5 cut(s) 22, 192, 252, 301, 343
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 3 cut(s) 251, 342, 346
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 3 cut(s) 50, 296, 308
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 136, 178
Bsp13I TCCGGA 1 cut(s) 21
BspACI CCGC 9 cut(s) 41, 44, 47, 123, 144, 147, 235, 255, 336
BspANI GGCC 3 cut(s) 50, 296, 308
BspCNI CTCAG 1 cut(s) 323
BspEI TCCGGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 333, 334
BspMI ACCTGC 1 cut(s) 275
BsrFI RCCGGY 2 cut(s) 191, 251
BssAI RCCGGY 2 cut(s) 191, 251
BssECI CCNNGG 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 271, 281
BstACI GRCGYC 1 cut(s) 241
BstBAI YACGTR 2 cut(s) 137, 179
BstC8I GCNNGC 2 cut(s) 142, 253
BstDEI CTNAG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 47, 314
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 204, 300, 342
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 310
BsuRI GGCC 3 cut(s) 50, 296, 308
BtrI CACGTC 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 142, 253
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 2 cut(s) 191, 251
Cfr13I GGNCC 2 cut(s) 70, 332
CseI GACGC 1 cut(s) 249
CviJI RGCY 8 cut(s) 50, 55, 191, 204, 251, 296, 308, 317
CviKI_1 RGCY 8 cut(s) 50, 55, 191, 204, 251, 296, 308, 317
DdeI CTNAG 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 48
EciI GGCGGA 2 cut(s) 138, 270
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 70, 332
Eco72I CACGTG 2 cut(s) 137, 179
Eco81I CCTNAGG 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 2 cut(s) 70, 332
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 204
FaqI GGGAC 1 cut(s) 318
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 42, 45, 48, 145, 236, 318
Fsp4HI GCNGC 6 cut(s) 42, 45, 48, 145, 236, 318
GlaI GCGC 1 cut(s) 87
GluI GCNGC 6 cut(s) 42, 45, 48, 145, 236, 318
HaeIII GGCC 3 cut(s) 50, 296, 308
HapII CCGG 5 cut(s) 22, 192, 252, 301, 343
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 241
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 366
HpaII CCGG 5 cut(s) 22, 192, 252, 301, 343
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 152, 158
Hpy188I TCNGA 2 cut(s) 59, 265
Hpy188III TCNNGA 3 cut(s) 22, 73, 353
Hpy8I GTNNAC 2 cut(s) 152, 158
Hpy99I CGWCG 2 cut(s) 225, 243
HpyAV CCTTC 2 cut(s) 21, 224
HpyCH4III ACNGT 2 cut(s) 271, 281
HpyCH4IV ACGT 5 cut(s) 102, 136, 154, 178, 223
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 314
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 5 cut(s) 102, 136, 154, 178, 223
Hsp92I GRCGYC 1 cut(s) 241
HspAI GCGC 1 cut(s) 86
KflI GGGWCCC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 21
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
LmnI GCTCC 3 cut(s) 30, 60, 131
Lsp1109I GCAGC 1 cut(s) 304
MaeII ACGT 5 cut(s) 102, 136, 154, 178, 223
MhlI GDGCHC 2 cut(s) 136, 178
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 375
MnlI CCTC 9 cut(s) 61, 104, 107, 175, 286, 298, 319, 340, 355
MroI TCCGGA 1 cut(s) 21
MroNI GCCGGC 1 cut(s) 251
MspI CCGG 5 cut(s) 22, 192, 252, 301, 343
MspR9I CCNGG 3 cut(s) 206, 302, 344
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 47, 314
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 2 cut(s) 302, 344
NgoMIV GCCGGC 1 cut(s) 251
NlaIV GGNNCC 2 cut(s) 333, 334
NmeAIII GCCGAG 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 275
PceI AGGCCT 1 cut(s) 308
PdiI GCCGGC 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 6 cut(s) 43, 46, 49, 146, 237, 319
PleI GAGTC 1 cut(s) 374
PmaCI CACGTG 2 cut(s) 137, 179
PmlI CACGTG 2 cut(s) 137, 179
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 2 cut(s) 137, 179
PpuMI RGGWCCY 2 cut(s) 70, 332
Psp5II RGGWCCY 2 cut(s) 70, 332
Psp6I CCWGG 1 cut(s) 204
PspCI CACGTG 2 cut(s) 137, 179
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 333, 334
PspPI GGNCC 2 cut(s) 70, 332
PspPPI RGGWCCY 2 cut(s) 70, 332
PstNI CAGNNNCTG 1 cut(s) 317
SatI GCNGC 6 cut(s) 42, 45, 48, 145, 236, 318
Sau96I GGNCC 2 cut(s) 70, 332
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 206, 302, 344
SduI GDGCHC 2 cut(s) 136, 178
SinI GGWCC 2 cut(s) 70, 332
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 17
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 9 cut(s) 41, 44, 47, 123, 144, 147, 235, 255, 336
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 204, 300, 342
TaaI ACNGT 2 cut(s) 271, 281
TaiI ACGT 5 cut(s) 105, 139, 157, 181, 226
TasI AATT 1 cut(s) 17
TauI GCSGC 5 cut(s) 44, 47, 50, 147, 238
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 70, 332
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.