Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010471

Physical Location & Seq

Genomic Coordinates Forward (+)

9310724 .. 9318372

Gene Structure 7649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTCCGTGTTTAATCAGGAGGAGCTGAAGGAGTGGGATCAATGCATATTAATGCTTGACGATGCCAAAGTGGATGAACATGGGAATCTGAATGACACAAAGGATTCAAATATCATGTACTTGGATAAAGATGGCGAAGATCATGAGATCAATATATCTTCTGCAATATGCTTTTTACGTGGTAAGGCATATGAAGCATTGGAAAACCGTGTCCAGGCCCGGCATTGGTACAAAGCTGCTATCAAAGCCGATCCCTTATGTTATGAGGCATTGGAATGTCTTATTGAAAATCACATGCTTACATATGAGGAAGAGGCAAGTCTACTTGCGTCATTACAATTTGGTCCTGAAGATGGATGGCTCTCATCATTCTACTCATGCTTAATTAAAAAGTACGACAAAGAAAATGTTGTAGAAGCAAAATTCAGAGAACTTGAAAAAGAGAAGTGTAATAGTAACACTTCTGATCCATCCTTCTTTCGTACTCTGAAAACCAACACTGACCTTCTTGCCTGCAAAGCTGAATACTACCATCAGTGTGGTGAATATCAAAAATGCTTTGAGCTAACTTCTGTACTACTTGAAAAAGACCCTTTCCATCTGAAGAGTACATTGGTGCATCTAGCCGCTGCTATGGAACTTGGGCATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCCTTATCATGGTTTGCCGTTGGATGTTACTATTATTGTATAAAAAAGTTTGCTGAGTCACACCGTTATTTCAGCAAGGCTACCAGTCTAGATGGGACCTTTCCACCTGCTTGGATTGGATATGGGAATGCTTATGCTGCTAAAGAAGAGGGTGATCAAGCAATGTCAGCTTATCGCACTGCTGCTCGTTTGTTTCCAGGGTGTCATTTACCAACTTTGTACATTGGGATGGAGTACATGCGAACCAACAGCTTTAAGCTCGCTGAACAGTTTTTTATGCAGGCGAAGACCACTTGCCCATCAGATCCACTAGTATATAATGAACTTGGTGTTGTTGCTTATCATTTGAAGGAGTATAACAAAGCTGTGTGGTGGTTTGAGAAAACTTTGGCTCAAATTCCTTCCCCTTTAAGTGAAATGTGGGAACCAACTGTGGTTAATCTAGCTCATGCATACAGAAAACTGAAGATGTACAATGAAGCTATTTCATACTATGAGAAAGCACTTGCATTGTCAACCAGAAGTGTGAGTACTTATGCAGGTCTTGCATATGCTTACCATTTACAGGATAATTTTACGGCAGCGATTACATACTATCATAAAGCTCTATGGCTACAACCAGATGATCATTTTTGCACTGAAATGTTAAGTTTGGCTTTAGCAGATGAAGCCCGTGGACCACAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

464

Amino Acids

53.25

Weight (kDa)

5.33

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78770
fragaria_vesca	FvH4_3g18210 FvH4_3g18210 FvH4_3g18210 FvH4_3g18210 FvH4_3g18210
malus_domestica	MD11G1264600.v1.1
prunus_persica	Prupe.4G161700_v2.0.a1 Prupe.4G161700_v2.0.a1 Prupe.4G162300_v2.0.a1
pyrus_communis	pycom11g23290
rosa_chinensis	RchiOBHm_Chr5g0030761
rosa_laevigata	RLG00000033249
rosa_multiflora	Rmu_sc0015440.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049560
rosa_rugosa	Rorug05G0120600
rosa_samantha	Rh5AG212600 Rh5BG211900 Rh5CG235100 Rh5DG216700
rosa_wichuraiana	Rw5G019470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	817
Acc36I	ACCTGC	2 cut(s)	817, 1232
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	627
AclWI	GGATC	4 cut(s)	45, 245, 461, 1001
AcsI	RAATTY	2 cut(s)	422, 1098
AcuI	CTGAAG	4 cut(s)	47, 369, 623, 1187
AfiI	CCNNNNNNNGG	5 cut(s)	214, 225, 353, 711, 1267
AgsI	TTSAA	6 cut(s)	108, 287, 437, 584, 651, 1051
AhlI	ACTAGT	1 cut(s)	1012
AjnI	CCWGG	2 cut(s)	213, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
Alw21I	GWGCWC	1 cut(s)	660
AlwI	GGATC	4 cut(s)	45, 245, 461, 1001
AoxI	GGCC	2 cut(s)	216, 702
ApeKI	GCWGC	5 cut(s)	236, 629, 839, 884, 1283
ApoI	RAATTY	2 cut(s)	422, 1098
AseI	ATTAAT	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	217, 344, 798, 1379
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	554, 866
AvaII	GGWCC	3 cut(s)	344, 798, 1379
BanII	GRGCYC	1 cut(s)	660
BarI	GAAGNNNNNNTAC	2 cut(s)	1216, 1248
BbsI	GAAGAC	1 cut(s)	995
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	5 cut(s)	223, 616, 826, 871, 1295
BccI	CCATC	9 cut(s)	125, 347, 351, 478, 540, 606, 788, 925, 1009
BceAI	ACGGC	2 cut(s)	704, 1296
BciT130I	CCWGG	2 cut(s)	215, 900
BclI	TGATCA	2 cut(s)	856, 1327
BcnI	CCSGG	1 cut(s)	220
BcuI	ACTAGT	1 cut(s)	1012
BfaI	CTAG	4 cut(s)	623, 791, 1013, 1145
BfuAI	ACCTGC	2 cut(s)	817, 1232
BisI	GCNGC	6 cut(s)	237, 627, 630, 840, 885, 1284
BlsI	GCNGC	6 cut(s)	238, 628, 631, 841, 886, 1285
BmcAI	AGTACT	1 cut(s)	1234
Bme1390I	CCNGG	3 cut(s)	215, 220, 900
Bme18I	GGWCC	3 cut(s)	344, 798, 1379
BmgT120I	GGNCC	4 cut(s)	217, 344, 798, 1379
BmiI	GGNNCC	2 cut(s)	799, 1128
BmrFI	CCNGG	3 cut(s)	215, 220, 900
BmsI	GCATC	2 cut(s)	52, 628
BpiI	GAAGAC	1 cut(s)	995
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	899, 1375
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 225, 353, 711, 1267
Bse1I	ACTGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	215, 900
BseDI	CCNNGG	2 cut(s)	899, 1375
BseGI	GGATG	5 cut(s)	79, 362, 470, 731, 936
BseLI	CCNNNNNNNGG	5 cut(s)	214, 225, 353, 711, 1267
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	786
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	5 cut(s)	223, 616, 826, 871, 1295
BshFI	GGCC	2 cut(s)	218, 704
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	5 cut(s)	214, 225, 353, 711, 1267
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	2 cut(s)	646, 835
BsnI	GGCC	2 cut(s)	218, 704
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp1407I	TGTACA	2 cut(s)	921, 1173
Bsp143I	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	2 cut(s)	218, 704
BspCNI	CTCAG	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	799, 1128
BspMI	ACCTGC	2 cut(s)	817, 1232
BspPI	GGATC	4 cut(s)	45, 245, 461, 1001
BsrDI	GCAATG	1 cut(s)	870
BsrGI	TGTACA	2 cut(s)	921, 1173
BsrI	ACTGG	1 cut(s)	786
BssECI	CCNNGG	2 cut(s)	899, 1375
BssMI	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
Bst2UI	CCWGG	2 cut(s)	215, 900
Bst4CI	ACNGT	4 cut(s)	209, 767, 972, 1135
Bst6I	CTCTTC	3 cut(s)	306, 599, 843
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstAUI	TGTACA	2 cut(s)	921, 1173
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	4 cut(s)	514, 673, 963, 984
BstDEI	CTNAG	1 cut(s)	756
BstDSI	CCRYGG	1 cut(s)	1375
BstF5I	GGATG	5 cut(s)	79, 362, 470, 731, 936
BstKTI	GATC	8 cut(s)	40, 142, 150, 253, 469, 859, 1009, 1330
BstMBI	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 245, 518, 839, 869, 1247, 1370
BstNI	CCWGG	2 cut(s)	215, 900
BstNSI	RCATGY	3 cut(s)	298, 675, 943
BstSCI	CCNGG	3 cut(s)	213, 218, 898
BstV1I	GCAGC	5 cut(s)	223, 616, 826, 871, 1295
BstV2I	GAAGAC	1 cut(s)	995
BstX2I	RGATCY	1 cut(s)	1006
BstXI	CCANNNNNNTGG	2 cut(s)	539, 813
BstYI	RGATCY	1 cut(s)	1006
BsuRI	GGCC	2 cut(s)	218, 704
BtgI	CCRYGG	1 cut(s)	1375
BtsCI	GGATG	5 cut(s)	79, 362, 470, 731, 936
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	4 cut(s)	498, 542, 879, 1338
BveI	ACCTGC	2 cut(s)	817, 1232
Cac8I	GCNNGC	4 cut(s)	514, 673, 963, 984
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	4 cut(s)	217, 344, 798, 1379
CseI	GACGC	1 cut(s)	318
CviAII	CATG	9 cut(s)	80, 115, 143, 295, 378, 672, 711, 940, 1151
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	8 cut(s)	39, 141, 149, 252, 468, 858, 1008, 1329
DpnII	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
Eam1104I	CTCTTC	3 cut(s)	306, 599, 843
EarI	CTCTTC	3 cut(s)	306, 599, 843
Ecl136II	GAGCTC	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	344, 798, 1379
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	4 cut(s)	47, 369, 623, 1187
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRII	CCWGG	2 cut(s)	213, 898
EcoT22I	ATGCAT	2 cut(s)	47, 1156
EcoT38I	GRGCYC	1 cut(s)	660
FaeI	CATG	9 cut(s)	83, 118, 146, 298, 381, 675, 714, 943, 1154
FalI	AAGNNNNNCTT	2 cut(s)	1342, 1374
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	9 cut(s)	79, 114, 142, 294, 377, 671, 710, 939, 1150
FauNDI	CATATG	3 cut(s)	190, 304, 1252
FbaI	TGATCA	2 cut(s)	856, 1327
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	6 cut(s)	237, 627, 630, 840, 885, 1284
FokI	GGATG	5 cut(s)	86, 369, 457, 738, 943
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	6 cut(s)	237, 627, 630, 840, 885, 1284
FspBI	CTAG	4 cut(s)	623, 791, 1013, 1145
GluI	GCNGC	6 cut(s)	237, 627, 630, 840, 885, 1284
HaeIII	GGCC	2 cut(s)	218, 704
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	9 cut(s)	83, 118, 146, 298, 381, 675, 714, 943, 1154
HincII	GTYRAC	1 cut(s)	1218
HindII	GTYRAC	1 cut(s)	1218
HinfI	GANTC	3 cut(s)	85, 104, 758
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	554, 866
Hpy166II	GTNNAC	3 cut(s)	323, 1218, 1379
Hpy188I	TCNGA	6 cut(s)	90, 428, 466, 489, 603, 1006
Hpy188III	TCNNGA	4 cut(s)	17, 143, 347, 791
Hpy8I	GTNNAC	3 cut(s)	323, 1218, 1379
HpyAV	CCTTC	6 cut(s)	22, 484, 515, 679, 1045, 1113
HpyCH4III	ACNGT	4 cut(s)	209, 767, 972, 1135
HpyCH4IV	ACGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 245, 518, 839, 869, 1247, 1370
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	9 cut(s)	83, 118, 146, 298, 381, 675, 714, 943, 1154
Ksp22I	TGATCA	2 cut(s)	856, 1327
Kzo9I	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	5 cut(s)	223, 616, 826, 871, 1295
LweI	GCATC	2 cut(s)	52, 628
MaeI	CTAG	4 cut(s)	623, 791, 1013, 1145
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	455, 728, 759
MalI	GATC	8 cut(s)	39, 141, 149, 252, 468, 858, 1008, 1329
MboI	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
MboII	GAAGA	8 cut(s)	149, 150, 323, 362, 616, 860, 1000, 1180
MflI	RGATCY	1 cut(s)	1006
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	6 cut(s)	338, 384, 422, 676, 1098, 1273
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	6 cut(s)	13, 259, 301, 307, 705, 844
Mph1103I	ATGCAT	2 cut(s)	47, 1156
MseI	TTAA	8 cut(s)	12, 50, 383, 387, 957, 1112, 1140, 1349
MslI	CAYNNNNRTG	6 cut(s)	50, 274, 537, 651, 929, 1343
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	3 cut(s)	215, 220, 900
Mva1269I	GAATGC	2 cut(s)	646, 835
MvaI	CCWGG	2 cut(s)	215, 900
MwoI	GCNNNNNNNGC	7 cut(s)	194, 245, 518, 839, 869, 1247, 1370
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	3 cut(s)	190, 304, 1252
NdeII	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
NlaIII	CATG	9 cut(s)	83, 118, 146, 298, 381, 675, 714, 943, 1154
NlaIV	GGNNCC	2 cut(s)	799, 1128
NmuCI	GTSAC	1 cut(s)	759
NsiI	ATGCAT	2 cut(s)	47, 1156
NspI	RCATGY	3 cut(s)	298, 675, 943
PacI	TTAATTAA	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	675
PagI	TCATGA	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	817
PceI	AGGCCT	1 cut(s)	704
PctI	GAATGC	2 cut(s)	646, 835
PfeI	GAWTC	2 cut(s)	85, 104
PkrI	GCNGC	6 cut(s)	238, 628, 631, 841, 886, 1285
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
Ppu21I	YACGTR	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	798
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	213, 898
PspGI	CCWGG	2 cut(s)	213, 898
PspN4I	GGNNCC	2 cut(s)	799, 1128
PspPI	GGNCC	4 cut(s)	217, 344, 798, 1379
PspPPI	RGGWCCY	1 cut(s)	798
PsuI	RGATCY	1 cut(s)	1006
RseI	CAYNNNNRTG	6 cut(s)	50, 274, 537, 651, 929, 1343
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	8 cut(s)	12, 50, 383, 387, 957, 1112, 1140, 1349
SatI	GCNGC	6 cut(s)	237, 627, 630, 840, 885, 1284
Sau3AI	GATC	8 cut(s)	37, 139, 147, 250, 466, 856, 1006, 1327
Sau96I	GGNCC	4 cut(s)	217, 344, 798, 1379
ScaI	AGTACT	1 cut(s)	1234
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	3 cut(s)	215, 220, 900
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	52, 628
SinI	GGWCC	3 cut(s)	344, 798, 1379
SmiMI	CAYNNNNRTG	6 cut(s)	50, 274, 537, 651, 929, 1343
SpeI	ACTAGT	1 cut(s)	1012
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	6 cut(s)	338, 384, 422, 676, 1098, 1273
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	4 cut(s)	623, 791, 1013, 1145
SstI	GAGCTC	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	3 cut(s)	213, 218, 898
TaaI	ACNGT	4 cut(s)	209, 767, 972, 1135
TaiI	ACGT	1 cut(s)	181
TasI	AATT	6 cut(s)	338, 384, 422, 676, 1098, 1273
TatI	WGTACW	7 cut(s)	117, 574, 608, 921, 936, 1173, 1232
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	85, 104
Tru1I	TTAA	8 cut(s)	12, 50, 383, 387, 957, 1112, 1140, 1349
Tru9I	TTAA	8 cut(s)	12, 50, 383, 387, 957, 1112, 1140, 1349
TscAI	CASTG	4 cut(s)	505, 542, 886, 1345
TseFI	GTSAC	1 cut(s)	759
TseI	GCWGC	5 cut(s)	236, 629, 839, 884, 1283
Tsp45I	GTSAC	1 cut(s)	759
TspDTI	ATGAA	6 cut(s)	90, 207, 1038, 1179, 1194, 1383
TspRI	CASTG	4 cut(s)	505, 542, 886, 1345
VpaK11BI	GGWCC	3 cut(s)	344, 798, 1379
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	2 cut(s)	422, 1098
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	3 cut(s)	298, 675, 943
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	4 cut(s)	623, 791, 1013, 1145
ZrmI	AGTACT	1 cut(s)	1234
Zsp2I	ATGCAT	2 cut(s)	47, 1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.