Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015440.1

Orthogroup ID

OG0010471

Physical Location & Seq

Genomic Coordinates Forward (+)

32642 .. 37085

Gene Structure 4444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015440.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgagagagcacgagaccgagaagcttcgcgcggtggtcagagactgcgtcaccaagcacctctactcgtcggcgatcttcttcgccgacaaagtcgccgcctttaccaaggagcccgccgatatctacatgctcgcccaggccctcttcctcggccgccattaccgtcgagccttccacctcctccactcctccaagatcgtcgaccgcgacctccgattccgttacctcgccgccaagtgcctcgaagagctgaaggactggcatcaatgccttaatatacttggtgatgctaatgtggatgaacatgggaacatatatgacagaaacgattctaatctcatgtacctggataaaggtggtgaagatcatgaaatcaatatagcttctgcaatatgctttctacgcggtaaggcatttgaggctttggaaaaccgtgtccaggcgcggaagtggtacaaagctgcaatcaaagccgatcctttgtgttatgaggcattggaatgtcttattgacaatcatatgctgacatgtgaggaagaggcaagtctactttcatcgatacaatttggtcctcaagatggatggctttcgtcattttactcatgcttgataaaaaagtatgacaaagaaaatgttgtagaagcaaactttggagaacttgaaaaagagggatgtaacagtaacacttccgatctttcgttcattcacactctgaaaaccaacactgaccttctggcgtgcaaagcagaatactaccatcagtgtggtgaatatcaaaaatgctttgaacttacctctttcctacttgaaaaagacactttccatctcaaaagtacattagtgcatctagcagctgcgatggaacttgggaattcaaatgagctctatcttatggcatgcaatttagtgaaggactatcctcaaaaggctttgtcatggttttctgttggctgttactattattgtatcaaaaagtatgatcagtcacgccgttatttcagtaaggctaccaatgtcgatggaaactttccacctgcatggataggatatgggaatgcttattctgctcaagatgagggagatcaagctatgtcaatttatcgcactgctgctcgtttgtttccagggtgtcatttaccaactttgtacattgggatggagtacatgcgaacccacagctacaaacttgctgagcaggtgacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032875 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_2 TPR_3 TPR_7 TPR_8

Protein Analysis

402

Amino Acids

46.25

Weight (kDa)

5.94

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78770
fragaria_vesca	FvH4_3g18210 FvH4_3g18210 FvH4_3g18210 FvH4_3g18210 FvH4_3g18210
malus_domestica	MD11G1264600.v1.1
prunus_persica	Prupe.4G161700_v2.0.a1 Prupe.4G161700_v2.0.a1 Prupe.4G162300_v2.0.a1
pyrus_communis	pycom11g23290
rosa_chinensis	RchiOBHm_Chr5g0030761
rosa_laevigata	RLG00000033249
rosa_multiflora	Rmu_sc0015440.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049560
rosa_rugosa	Rorug05G0120600
rosa_samantha	Rh5AG212600 Rh5BG211900 Rh5CG235100 Rh5DG216700
rosa_wichuraiana	Rw5G019470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1045, 1189
Acc36I	ACCTGC	2 cut(s)	1045, 1189
AccI	GTMKAC	2 cut(s)	204, 550
AccII	CGCG	5 cut(s)	30, 32, 210, 408, 448
AciI	CCGC	8 cut(s)	32, 99, 117, 157, 208, 234, 408, 448
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	5 cut(s)	347, 458, 838, 1151, 1166
AfiI	CCNNNNNNNGG	2 cut(s)	442, 581
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	665, 791, 812, 879
AjnI	CCWGG	4 cut(s)	138, 348, 441, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	8 cut(s)	25, 253, 386, 464, 857, 886, 1091, 1182
AluI	AGCT	8 cut(s)	25, 253, 386, 464, 857, 886, 1091, 1182
Alw21I	GWGCWC	2 cut(s)	12, 888
Alw26I	GTCTC	2 cut(s)	8, 36
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	141, 154
ApeKI	GCWGC	4 cut(s)	464, 854, 857, 1112
ApoI	RAATTY	1 cut(s)	874
Asp700I	GAANNNNTTC	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	32, 448
AspS9I	GGNCC	2 cut(s)	142, 572
AsuHPI	GGTGA	4 cut(s)	43, 299, 374, 782
AvaII	GGWCC	1 cut(s)	572
BanII	GRGCYC	2 cut(s)	117, 888
BauI	CACGAG	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	12, 888
BbvI	GCAGC	4 cut(s)	451, 844, 866, 1099
BccI	CCATC	7 cut(s)	575, 579, 768, 834, 856, 1016, 1153
BceAI	ACGGC	1 cut(s)	978
BciT130I	CCWGG	4 cut(s)	140, 350, 443, 1128
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	2 cut(s)	8, 36
BfaI	CTAG	1 cut(s)	851
BfuAI	ACCTGC	2 cut(s)	1045, 1189
BisI	GCNGC	7 cut(s)	99, 157, 234, 465, 855, 858, 1113
BlpI	GCTNAGC	1 cut(s)	1194
BlsI	GCNGC	7 cut(s)	100, 158, 235, 466, 856, 859, 1114
Bme1390I	CCNGG	4 cut(s)	140, 350, 443, 1128
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	142, 572
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	4 cut(s)	140, 350, 443, 1128
BmsI	GCATC	3 cut(s)	274, 280, 856
Bpu1102I	GCTNAGC	1 cut(s)	1194
BpuEI	CTTGAG	2 cut(s)	561, 1056
Bsa29I	ATCGAT	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	4 cut(s)	108, 138, 151, 1127
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 581
Bse1I	ACTGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	4 cut(s)	140, 350, 443, 1128
BseCI	ATCGAT	1 cut(s)	560
BseDI	CCNNGG	4 cut(s)	108, 138, 151, 1127
BseGI	GGATG	4 cut(s)	307, 590, 680, 1164
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	442, 581
BseMII	CTCAG	1 cut(s)	1185
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	173, 181
BseX3I	CGGCCG	1 cut(s)	154
BseXI	GCAGC	4 cut(s)	451, 844, 866, 1099
Bsh1236I	CGCG	5 cut(s)	30, 32, 210, 408, 448
Bsh1285I	CGRYCG	2 cut(s)	157, 208
BshFI	GGCC	2 cut(s)	143, 156
BshVI	ATCGAT	1 cut(s)	560
BsiEI	CGRYCG	2 cut(s)	157, 208
BsiHKAI	GWGCWC	2 cut(s)	12, 888
BslI	CCNNNNNNNGG	2 cut(s)	442, 581
BsmAI	GTCTC	2 cut(s)	8, 36
BsmI	GAATGC	1 cut(s)	1063
BsnI	GGCC	2 cut(s)	143, 156
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	12, 117, 888
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
Bsp1720I	GCTNAGC	1 cut(s)	1194
BspACI	CCGC	8 cut(s)	32, 99, 117, 157, 208, 234, 408, 448
BspANI	GGCC	2 cut(s)	143, 156
BspCNI	CTCAG	1 cut(s)	1186
BspDI	ATCGAT	1 cut(s)	560
BspFNI	CGCG	5 cut(s)	30, 32, 210, 408, 448
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	2 cut(s)	1045, 1189
BspPI	GGATC	1 cut(s)	473
BspQI	GCTCTTC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	108, 138, 151, 1127
BssMI	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	4 cut(s)	140, 350, 443, 1128
Bst4CI	ACNGT	3 cut(s)	167, 437, 683
Bst6I	CTCTTC	3 cut(s)	152, 243, 534
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	4 cut(s)	117, 135, 742, 901
BstDEI	CTNAG	2 cut(s)	1194, 1206
BstF5I	GGATG	4 cut(s)	307, 590, 680, 1164
BstFNI	CGCG	5 cut(s)	30, 32, 210, 408, 448
BstHHI	GCGC	2 cut(s)	32, 448
BstKTI	GATC	7 cut(s)	78, 201, 370, 481, 697, 985, 1087
BstMAI	GTCTC	2 cut(s)	8, 36
BstMBI	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
BstMCI	CGRYCG	2 cut(s)	157, 208
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 422, 473, 746, 1067
BstNI	CCWGG	4 cut(s)	140, 350, 443, 1128
BstNSI	RCATGY	4 cut(s)	133, 534, 903, 1171
BstSCI	CCNGG	4 cut(s)	138, 348, 441, 1126
BstUI	CGCG	5 cut(s)	30, 32, 210, 408, 448
BstV1I	GCAGC	4 cut(s)	451, 844, 866, 1099
BstXI	CCANNNNNNTGG	2 cut(s)	767, 1041
BstZI	CGGCCG	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	143, 156
BsuTUI	ATCGAT	1 cut(s)	560
BtgZI	GCGATG	1 cut(s)	875
BtsCI	GGATG	4 cut(s)	307, 590, 680, 1164
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	3 cut(s)	726, 770, 1107
BveI	ACCTGC	2 cut(s)	1045, 1189
Cac8I	GCNNGC	4 cut(s)	117, 135, 742, 901
CaiI	CAGNNNCTG	1 cut(s)	45
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	2 cut(s)	32, 448
Cfr13I	GGNCC	2 cut(s)	142, 572
ClaI	ATCGAT	1 cut(s)	560
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	5 cut(s)	346, 457, 837, 1150, 1165
CviQI	GTAC	5 cut(s)	346, 457, 837, 1150, 1165
DdeI	CTNAG	2 cut(s)	1194, 1206
DpnI	GATC	7 cut(s)	77, 200, 369, 480, 696, 984, 1086
DpnII	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	152, 243, 534
EarI	CTCTTC	3 cut(s)	152, 243, 534
Ecl136II	GAGCTC	1 cut(s)	886
EclXI	CGGCCG	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	117, 888
Eco31I	GGTCTC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	572
Eco52I	CGGCCG	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	886
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	4 cut(s)	138, 348, 441, 1126
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	117, 888
ErhI	CCWWGG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	982
FblI	GTMKAC	2 cut(s)	204, 550
Fnu4HI	GCNGC	7 cut(s)	99, 157, 234, 465, 855, 858, 1113
FokI	GGATG	4 cut(s)	314, 597, 687, 1171
FriOI	GRGCYC	2 cut(s)	117, 888
Fsp4HI	GCNGC	7 cut(s)	99, 157, 234, 465, 855, 858, 1113
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	2 cut(s)	31, 447
GluI	GCNGC	7 cut(s)	99, 157, 234, 465, 855, 858, 1113
HaeIII	GGCC	2 cut(s)	143, 156
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	32, 448
Hin6I	GCGC	2 cut(s)	30, 446
HinP1I	GCGC	2 cut(s)	30, 446
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	219, 332
HphI	GGTGA	4 cut(s)	43, 299, 374, 782
Hpy166II	GTNNAC	2 cut(s)	205, 551
Hpy188I	TCNGA	4 cut(s)	41, 218, 694, 717
Hpy188III	TCNNGA	3 cut(s)	371, 578, 1073
Hpy8I	GTNNAC	2 cut(s)	205, 551
Hpy99I	CGWCG	3 cut(s)	73, 171, 206
HpyAV	CCTTC	4 cut(s)	184, 250, 743, 907
HpyCH4III	ACNGT	3 cut(s)	167, 437, 683
HpyCH4V	TGCA	6 cut(s)	392, 467, 744, 847, 903, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 422, 473, 746, 1067
HpyF3I	CTNAG	2 cut(s)	1194, 1206
HspAI	GCGC	2 cut(s)	30, 446
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	4 cut(s)	451, 844, 866, 1099
LweI	GCATC	3 cut(s)	274, 280, 856
MaeI	CTAG	1 cut(s)	851
MaeIII	GTNAC	7 cut(s)	49, 224, 677, 683, 956, 987, 1201
MalI	GATC	7 cut(s)	77, 200, 369, 480, 696, 984, 1086
MboI	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
MboII	GAAGA	6 cut(s)	70, 73, 139, 260, 377, 551
MhlI	GDGCHC	3 cut(s)	12, 117, 888
MluCI	AATT	4 cut(s)	566, 874, 904, 1098
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	4 cut(s)	502, 765, 1039, 1157
MspA1I	CMGCKG	1 cut(s)	857
MspR9I	CCNGG	4 cut(s)	140, 350, 443, 1128
Mva1269I	GAATGC	1 cut(s)	1063
MvaI	CCWGG	4 cut(s)	140, 350, 443, 1128
MvnI	CGCG	5 cut(s)	30, 32, 210, 408, 448
MwoI	GCNNNNNNNGC	5 cut(s)	405, 422, 473, 746, 1067
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	3 cut(s)	49, 987, 1201
NspI	RCATGY	4 cut(s)	133, 534, 903, 1171
PaeI	GCATGC	1 cut(s)	903
PagI	TCATGA	1 cut(s)	370
PaqCI	CACCTGC	2 cut(s)	1045, 1189
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	1063
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	219, 332
PflFI	GACNNNGTC	2 cut(s)	47, 92
PkrI	GCNGC	7 cut(s)	100, 158, 235, 466, 856, 859, 1114
PscI	ACATGT	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	888
Psp6I	CCWGG	4 cut(s)	138, 348, 441, 1126
PspGI	CCWGG	4 cut(s)	138, 348, 441, 1126
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	142, 572
PstNI	CAGNNNCTG	1 cut(s)	45
PsyI	GACNNNGTC	2 cut(s)	47, 92
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	5 cut(s)	347, 458, 838, 1151, 1166
RsaNI	GTAC	5 cut(s)	346, 457, 837, 1150, 1165
RseI	CAYNNNNRTG	4 cut(s)	502, 765, 1039, 1157
SacI	GAGCTC	1 cut(s)	888
SalI	GTCGAC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	7 cut(s)	99, 157, 234, 465, 855, 858, 1113
Sau3AI	GATC	7 cut(s)	75, 198, 367, 478, 694, 982, 1084
Sau96I	GGNCC	2 cut(s)	142, 572
ScrFI	CCNGG	4 cut(s)	140, 350, 443, 1128
SduI	GDGCHC	3 cut(s)	12, 117, 888
SfaNI	GCATC	3 cut(s)	274, 280, 856
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	4 cut(s)	502, 765, 1039, 1157
SmlI	CTYRAG	2 cut(s)	576, 1071
SmoI	CTYRAG	2 cut(s)	576, 1071
SphI	GCATGC	1 cut(s)	903
Sse9I	AATT	4 cut(s)	566, 874, 904, 1098
SsiI	CCGC	8 cut(s)	32, 99, 117, 157, 208, 234, 408, 448
SspMI	CTAG	1 cut(s)	851
SstI	GAGCTC	1 cut(s)	888
StyD4I	CCNGG	4 cut(s)	138, 348, 441, 1126
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	167, 437, 683
TaqI	TCGA	5 cut(s)	169, 204, 246, 560, 1020
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	4 cut(s)	566, 874, 904, 1098
TatI	WGTACW	3 cut(s)	836, 1149, 1164
TauI	GCSGC	3 cut(s)	101, 159, 236
TfiI	GAWTC	2 cut(s)	219, 332
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	3 cut(s)	733, 770, 1114
TseFI	GTSAC	3 cut(s)	49, 987, 1201
TseI	GCWGC	4 cut(s)	464, 854, 857, 1112
Tsp45I	GTSAC	3 cut(s)	49, 987, 1201
TspDTI	ATGAA	4 cut(s)	318, 387, 546, 694
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	3 cut(s)	733, 770, 1114
Tth111I	GACNNNGTC	2 cut(s)	47, 92
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	4 cut(s)	133, 534, 903, 1171
XmiI	GTMKAC	2 cut(s)	204, 550
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.