Amino acid permease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09220 AT5G63850 |
| fragaria_vesca | FvH4_2g01330 |
| malus_domestica | MD05G1120400.v1.1 |
| prunus_persica | Prupe.4G277700_v2.0.a1 Prupe.8G164200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0252251 |
| rosa_laevigata | RLG00000015401 |
| rosa_multiflora | Rmu_sc0006252.1_g000018 Rmu_sc0009799.1_g000021 |
| rosa_roxburghii | Rroxscaffold_7G00216210 |
| rosa_rugosa | Rorug05G0506400 |
| rosa_samantha | Rh6AG020200 Rh6BG015800 Rh6CG013000 |
| rosa_wichuraiana | Rw6G001660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1115 |
| AccBSI | CCGCTC | 1 cut(s) | 330 |
| AciI | CCGC | 3 cut(s) | 120, 328, 984 |
| AclWI | GGATC | 2 cut(s) | 160, 441 |
| AcoI | YGGCCR | 1 cut(s) | 1250 |
| AcsI | RAATTY | 2 cut(s) | 783, 1166 |
| AcyI | GRCGYC | 2 cut(s) | 522, 1395 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 174, 280, 293, 1115 |
| AgeI | ACCGGT | 1 cut(s) | 935 |
| AgsI | TTSAA | 7 cut(s) | 382, 782, 1103, 1213, 1386, 1411, 1429 |
| AjnI | CCWGG | 3 cut(s) | 919, 1114, 1353 |
| AleI | CACNNNNGTG | 1 cut(s) | 465 |
| AluBI | AGCT | 6 cut(s) | 190, 240, 734, 902, 1084, 1437 |
| AluI | AGCT | 6 cut(s) | 190, 240, 734, 902, 1084, 1437 |
| Alw21I | GWGCWC | 2 cut(s) | 130, 1316 |
| Alw26I | GTCTC | 2 cut(s) | 260, 903 |
| Alw44I | GTGCAC | 1 cut(s) | 126 |
| AlwI | GGATC | 2 cut(s) | 160, 441 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 422, 1115 |
| AoxI | GGCC | 3 cut(s) | 177, 1070, 1250 |
| ApaLI | GTGCAC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 9 cut(s) | 416, 587, 669, 899, 964, 1058, 1198, 1373, 1376 |
| ApoI | RAATTY | 2 cut(s) | 783, 1166 |
| AsiGI | ACCGGT | 1 cut(s) | 935 |
| AspS9I | GGNCC | 4 cut(s) | 117, 177, 206, 283 |
| AsuC2I | CCSGG | 3 cut(s) | 280, 551, 655 |
| AsuHPI | GGTGA | 5 cut(s) | 283, 595, 667, 925, 1081 |
| AvaII | GGWCC | 3 cut(s) | 117, 206, 283 |
| BaeGI | GKGCMC | 1 cut(s) | 130 |
| BalI | TGGCCA | 1 cut(s) | 1252 |
| BauI | CACGAG | 1 cut(s) | 461 |
| Bbv12I | GWGCWC | 2 cut(s) | 130, 1316 |
| BbvI | GCAGC | 9 cut(s) | 428, 574, 681, 911, 951, 1070, 1185, 1360, 1363 |
| BccI | CCATC | 8 cut(s) | 189, 217, 427, 803, 817, 1040, 1062, 1314 |
| BceAI | ACGGC | 4 cut(s) | 107, 156, 466, 839 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 435, 469, 670, 704 |
| BciT130I | CCWGG | 3 cut(s) | 921, 1116, 1355 |
| BciVI | GTATCC | 1 cut(s) | 398 |
| BclI | TGATCA | 1 cut(s) | 559 |
| BcnI | CCSGG | 3 cut(s) | 280, 551, 655 |
| BcoDI | GTCTC | 2 cut(s) | 260, 903 |
| BfaI | CTAG | 3 cut(s) | 191, 1232, 1367 |
| BfuI | GTATCC | 1 cut(s) | 398 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 678 |
| BlpI | GCTNAGC | 3 cut(s) | 186, 845, 1340 |
| Bme1390I | CCNGG | 6 cut(s) | 280, 551, 655, 921, 1116, 1355 |
| Bme18I | GGWCC | 3 cut(s) | 117, 206, 283 |
| BmgT120I | GGNCC | 4 cut(s) | 117, 177, 206, 283 |
| BmiI | GGNNCC | 4 cut(s) | 51, 67, 284, 285 |
| BmrFI | CCNGG | 6 cut(s) | 280, 551, 655, 921, 1116, 1355 |
| BmrI | ACTGGG | 2 cut(s) | 1103, 1265 |
| BmsI | GCATC | 4 cut(s) | 428, 696, 858, 1164 |
| BmuI | ACTGGG | 2 cut(s) | 1103, 1265 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 186, 845, 1340 |
| BpuMI | CCSGG | 3 cut(s) | 280, 551, 655 |
| BsaBI | GATNNNNATC | 2 cut(s) | 437, 558 |
| BsaHI | GRCGYC | 2 cut(s) | 522, 1395 |
| BsaJI | CCNNGG | 5 cut(s) | 168, 279, 628, 919, 1115 |
| BsaWI | WCCGGW | 1 cut(s) | 935 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 336, 366 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 174, 280, 293, 1115 |
| Bse118I | RCCGGY | 3 cut(s) | 293, 677, 935 |
| Bse1I | ACTGG | 4 cut(s) | 109, 1109, 1155, 1271 |
| Bse3DI | GCAATG | 4 cut(s) | 180, 411, 972, 1344 |
| Bse8I | GATNNNNATC | 2 cut(s) | 437, 558 |
| BseBI | CCWGG | 3 cut(s) | 921, 1116, 1355 |
| BseDI | CCNNGG | 5 cut(s) | 168, 279, 628, 919, 1115 |
| BseGI | GGATG | 1 cut(s) | 200 |
| BseJI | GATNNNNATC | 2 cut(s) | 437, 558 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 174, 280, 293, 1115 |
| BseMI | GCAATG | 4 cut(s) | 180, 411, 972, 1344 |
| BseMII | CTCAG | 2 cut(s) | 200, 1331 |
| BseNI | ACTGG | 4 cut(s) | 109, 1109, 1155, 1271 |
| BseRI | GAGGAG | 2 cut(s) | 248, 736 |
| BseSI | GKGCMC | 1 cut(s) | 130 |
| BseXI | GCAGC | 9 cut(s) | 428, 574, 681, 911, 951, 1070, 1185, 1360, 1363 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1424 |
| BshFI | GGCC | 3 cut(s) | 179, 1072, 1252 |
| BshTI | ACCGGT | 1 cut(s) | 935 |
| BsiEI | CGRYCG | 1 cut(s) | 1424 |
| BsiHKAI | GWGCWC | 2 cut(s) | 130, 1316 |
| BsiSI | CCGG | 6 cut(s) | 279, 294, 551, 654, 678, 936 |
| BslFI | GGGAC | 3 cut(s) | 296, 670, 1091 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 174, 280, 293, 1115 |
| BsmAI | GTCTC | 2 cut(s) | 260, 903 |
| BsmFI | GGGAC | 3 cut(s) | 296, 670, 1091 |
| BsnI | GGCC | 3 cut(s) | 179, 1072, 1252 |
| Bsp1286I | GDGCHC | 2 cut(s) | 130, 1316 |
| Bsp143I | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 186, 845, 1340 |
| BspACI | CCGC | 3 cut(s) | 120, 328, 984 |
| BspANI | GGCC | 3 cut(s) | 179, 1072, 1252 |
| BspCNI | CTCAG | 2 cut(s) | 199, 1332 |
| BspLI | GGNNCC | 4 cut(s) | 51, 67, 284, 285 |
| BspPI | GGATC | 2 cut(s) | 160, 441 |
| BsrBI | CCGCTC | 1 cut(s) | 330 |
| BsrDI | GCAATG | 4 cut(s) | 180, 411, 972, 1344 |
| BsrFI | RCCGGY | 3 cut(s) | 293, 677, 935 |
| BsrI | ACTGG | 4 cut(s) | 109, 1109, 1155, 1271 |
| BssAI | RCCGGY | 3 cut(s) | 293, 677, 935 |
| BssECI | CCNNGG | 5 cut(s) | 168, 279, 628, 919, 1115 |
| BssMI | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| BssNI | GRCGYC | 2 cut(s) | 522, 1395 |
| BssSI | CACGAG | 1 cut(s) | 461 |
| BssT1I | CCWWGG | 2 cut(s) | 168, 628 |
| Bst2BI | CACGAG | 1 cut(s) | 461 |
| Bst2UI | CCWGG | 3 cut(s) | 921, 1116, 1355 |
| Bst4CI | ACNGT | 7 cut(s) | 269, 275, 697, 841, 1125, 1261, 1425 |
| Bst6I | CTCTTC | 1 cut(s) | 616 |
| BstACI | GRCGYC | 2 cut(s) | 522, 1395 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1350 |
| BstC8I | GCNNGC | 4 cut(s) | 299, 1082, 1351, 1393 |
| BstDEI | CTNAG | 3 cut(s) | 186, 845, 1340 |
| BstF5I | GGATG | 1 cut(s) | 200 |
| BstKTI | GATC | 6 cut(s) | 60, 155, 441, 449, 513, 562 |
| BstMAI | GTCTC | 2 cut(s) | 260, 903 |
| BstMBI | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| BstMCI | CGRYCG | 1 cut(s) | 1424 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 72, 678, 983, 1350 |
| BstNI | CCWGG | 3 cut(s) | 921, 1116, 1355 |
| BstNSI | RCATGY | 1 cut(s) | 877 |
| BstSCI | CCNGG | 6 cut(s) | 278, 549, 653, 919, 1114, 1353 |
| BstSLI | GKGCMC | 1 cut(s) | 130 |
| BstV1I | GCAGC | 9 cut(s) | 428, 574, 681, 911, 951, 1070, 1185, 1360, 1363 |
| BstX2I | RGATCY | 1 cut(s) | 152 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 46, 467, 1004 |
| BstYI | RGATCY | 1 cut(s) | 152 |
| BsuI | GTATCC | 1 cut(s) | 398 |
| BsuRI | GGCC | 3 cut(s) | 179, 1072, 1252 |
| BtgZI | GCGATG | 1 cut(s) | 835 |
| BtsCI | GGATG | 1 cut(s) | 200 |
| BtsIMutI | CAGTG | 2 cut(s) | 774, 1116 |
| Cac8I | GCNNGC | 4 cut(s) | 299, 1082, 1351, 1393 |
| CaiI | CAGNNNCTG | 2 cut(s) | 422, 1115 |
| Cfr10I | RCCGGY | 3 cut(s) | 293, 677, 935 |
| Cfr13I | GGNCC | 4 cut(s) | 117, 177, 206, 283 |
| CseI | GACGC | 3 cut(s) | 329, 511, 1384 |
| CspAI | ACCGGT | 1 cut(s) | 935 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 343, 378, 551, 586, 698, 733 |
| CviAII | CATG | 9 cut(s) | 174, 217, 252, 430, 508, 826, 874, 889, 1399 |
| DdeI | CTNAG | 3 cut(s) | 186, 845, 1340 |
| DpnI | GATC | 6 cut(s) | 59, 154, 440, 448, 512, 561 |
| DpnII | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| EaeI | YGGCCR | 1 cut(s) | 1250 |
| Eam1104I | CTCTTC | 1 cut(s) | 616 |
| EarI | CTCTTC | 1 cut(s) | 616 |
| Eco130I | CCWWGG | 2 cut(s) | 168, 628 |
| Eco47I | GGWCC | 3 cut(s) | 117, 206, 283 |
| EcoO109I | RGGNCCY | 1 cut(s) | 283 |
| EcoRII | CCWGG | 3 cut(s) | 919, 1114, 1353 |
| EcoT14I | CCWWGG | 2 cut(s) | 168, 628 |
| ErhI | CCWWGG | 2 cut(s) | 168, 628 |
| FaeI | CATG | 9 cut(s) | 177, 220, 255, 433, 511, 829, 877, 892, 1402 |
| FaqI | GGGAC | 3 cut(s) | 296, 670, 1091 |
| FatI | CATG | 9 cut(s) | 173, 216, 251, 429, 507, 825, 873, 888, 1398 |
| FauNDI | CATATG | 1 cut(s) | 489 |
| FbaI | TGATCA | 1 cut(s) | 559 |
| FokI | GGATG | 1 cut(s) | 207 |
| FspBI | CTAG | 3 cut(s) | 191, 1232, 1367 |
| HaeIII | GGCC | 3 cut(s) | 179, 1072, 1252 |
| HapII | CCGG | 6 cut(s) | 279, 294, 551, 654, 678, 936 |
| HgaI | GACGC | 3 cut(s) | 329, 511, 1384 |
| Hin1I | GRCGYC | 2 cut(s) | 522, 1395 |
| Hin1II | CATG | 9 cut(s) | 177, 220, 255, 433, 511, 829, 877, 892, 1402 |
| HindIII | AAGCTT | 1 cut(s) | 1082 |
| HinfI | GANTC | 2 cut(s) | 772, 1300 |
| HpaII | CCGG | 6 cut(s) | 279, 294, 551, 654, 678, 936 |
| HphI | GGTGA | 5 cut(s) | 283, 595, 667, 925, 1081 |
| Hpy166II | GTNNAC | 3 cut(s) | 128, 997, 1417 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 692, 814 |
| Hpy188III | TCNNGA | 2 cut(s) | 788, 1171 |
| Hpy8I | GTNNAC | 3 cut(s) | 128, 997, 1417 |
| Hpy99I | CGWCG | 2 cut(s) | 86, 89 |
| HpyAV | CCTTC | 2 cut(s) | 1216, 1405 |
| HpyCH4III | ACNGT | 7 cut(s) | 269, 275, 697, 841, 1125, 1261, 1425 |
| HpyCH4V | TGCA | 7 cut(s) | 128, 416, 647, 888, 899, 1289, 1391 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 72, 678, 983, 1350 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 845, 1340 |
| Hsp92I | GRCGYC | 2 cut(s) | 522, 1395 |
| Hsp92II | CATG | 9 cut(s) | 177, 220, 255, 433, 511, 829, 877, 892, 1402 |
| KflI | GGGWCCC | 1 cut(s) | 283 |
| Ksp22I | TGATCA | 1 cut(s) | 559 |
| Kzo9I | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| LmnI | GCTCC | 5 cut(s) | 71, 335, 344, 1007, 1311 |
| Lsp1109I | GCAGC | 9 cut(s) | 428, 574, 681, 911, 951, 1070, 1185, 1360, 1363 |
| LweI | GCATC | 4 cut(s) | 428, 696, 858, 1164 |
| MaeI | CTAG | 3 cut(s) | 191, 1232, 1367 |
| MaeIII | GTNAC | 5 cut(s) | 269, 523, 697, 740, 856 |
| MalI | GATC | 6 cut(s) | 59, 154, 440, 448, 512, 561 |
| MbiI | CCGCTC | 1 cut(s) | 330 |
| MboI | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| MboII | GAAGA | 3 cut(s) | 603, 920, 1201 |
| MfeI | CAATTG | 3 cut(s) | 451, 579, 1386 |
| MflI | RGATCY | 1 cut(s) | 152 |
| MhlI | GDGCHC | 2 cut(s) | 130, 1316 |
| MlsI | TGGCCA | 1 cut(s) | 1252 |
| MluCI | AATT | 9 cut(s) | 369, 393, 451, 579, 633, 783, 1166, 1359, 1386 |
| MluNI | TGGCCA | 1 cut(s) | 1252 |
| MmeI | TCCRAC | 1 cut(s) | 985 |
| MnlI | CCTC | 6 cut(s) | 269, 299, 683, 714, 1151, 1340 |
| Mox20I | TGGCCA | 1 cut(s) | 1252 |
| MscI | TGGCCA | 1 cut(s) | 1252 |
| MseI | TTAA | 3 cut(s) | 1131, 1136, 1256 |
| MslI | CAYNNNNRTG | 3 cut(s) | 44, 465, 1066 |
| Msp20I | TGGCCA | 1 cut(s) | 1252 |
| MspI | CCGG | 6 cut(s) | 279, 294, 551, 654, 678, 936 |
| MspR9I | CCNGG | 6 cut(s) | 280, 551, 655, 921, 1116, 1355 |
| MunI | CAATTG | 3 cut(s) | 451, 579, 1386 |
| MvaI | CCWGG | 3 cut(s) | 921, 1116, 1355 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 72, 678, 983, 1350 |
| NciI | CCSGG | 3 cut(s) | 280, 551, 655 |
| NdeI | CATATG | 1 cut(s) | 489 |
| NdeII | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| NlaIII | CATG | 9 cut(s) | 177, 220, 255, 433, 511, 829, 877, 892, 1402 |
| NlaIV | GGNNCC | 4 cut(s) | 51, 67, 284, 285 |
| NmuCI | GTSAC | 2 cut(s) | 523, 697 |
| NspI | RCATGY | 1 cut(s) | 877 |
| OliI | CACNNNNGTG | 1 cut(s) | 465 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 97 |
| PfeI | GAWTC | 2 cut(s) | 772, 1300 |
| PflFI | GACNNNGTC | 1 cut(s) | 323 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1115 |
| PfoI | TCCNGGA | 1 cut(s) | 549 |
| PinAI | ACCGGT | 1 cut(s) | 935 |
| PpuMI | RGGWCCY | 1 cut(s) | 283 |
| Psp5II | RGGWCCY | 1 cut(s) | 283 |
| Psp6I | CCWGG | 3 cut(s) | 919, 1114, 1353 |
| PspGI | CCWGG | 3 cut(s) | 919, 1114, 1353 |
| PspN4I | GGNNCC | 4 cut(s) | 51, 67, 284, 285 |
| PspPI | GGNCC | 4 cut(s) | 117, 177, 206, 283 |
| PspPPI | RGGWCCY | 1 cut(s) | 283 |
| PstNI | CAGNNNCTG | 2 cut(s) | 422, 1115 |
| PsuI | RGATCY | 1 cut(s) | 152 |
| PsyI | GACNNNGTC | 1 cut(s) | 323 |
| RseI | CAYNNNNRTG | 3 cut(s) | 44, 465, 1066 |
| SaqAI | TTAA | 3 cut(s) | 1131, 1136, 1256 |
| Sau3AI | GATC | 6 cut(s) | 57, 152, 438, 446, 510, 559 |
| Sau96I | GGNCC | 4 cut(s) | 117, 177, 206, 283 |
| ScrFI | CCNGG | 6 cut(s) | 280, 551, 655, 921, 1116, 1355 |
| SduI | GDGCHC | 2 cut(s) | 130, 1316 |
| SfaNI | GCATC | 4 cut(s) | 428, 696, 858, 1164 |
| SinI | GGWCC | 3 cut(s) | 117, 206, 283 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 44, 465, 1066 |
| Sse9I | AATT | 9 cut(s) | 369, 393, 451, 579, 633, 783, 1166, 1359, 1386 |
| SsiI | CCGC | 3 cut(s) | 120, 328, 984 |
| SspMI | CTAG | 3 cut(s) | 191, 1232, 1367 |
| StyD4I | CCNGG | 6 cut(s) | 278, 549, 653, 919, 1114, 1353 |
| StyI | CCWWGG | 2 cut(s) | 168, 628 |
| TaaI | ACNGT | 7 cut(s) | 269, 275, 697, 841, 1125, 1261, 1425 |
| TaqI | TCGA | 2 cut(s) | 1147, 1404 |
| TaqII | GACCGA | 1 cut(s) | 716 |
| TasI | AATT | 9 cut(s) | 369, 393, 451, 579, 633, 783, 1166, 1359, 1386 |
| TauI | GCSGC | 1 cut(s) | 986 |
| TfiI | GAWTC | 2 cut(s) | 772, 1300 |
| Tru1I | TTAA | 3 cut(s) | 1131, 1136, 1256 |
| Tru9I | TTAA | 3 cut(s) | 1131, 1136, 1256 |
| TscAI | CASTG | 2 cut(s) | 774, 1116 |
| TseFI | GTSAC | 2 cut(s) | 523, 697 |
| TseI | GCWGC | 9 cut(s) | 416, 587, 669, 899, 964, 1058, 1198, 1373, 1376 |
| Tsp45I | GTSAC | 2 cut(s) | 523, 697 |
| TspDTI | ATGAA | 2 cut(s) | 240, 842 |
| TspGWI | ACGGA | 1 cut(s) | 102 |
| TspRI | CASTG | 2 cut(s) | 774, 1116 |
| Tth111I | GACNNNGTC | 1 cut(s) | 323 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1115 |
| VneI | GTGCAC | 1 cut(s) | 126 |
| VpaK11BI | GGWCC | 3 cut(s) | 117, 206, 283 |
| XapI | RAATTY | 2 cut(s) | 783, 1166 |
| XceI | RCATGY | 1 cut(s) | 877 |
| XspI | CTAG | 3 cut(s) | 191, 1232, 1367 |