Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0019700

Physical Location & Seq

Genomic Coordinates Reverse (-)

24665235 .. 24667297

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G284500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACACATCTACAGAATCTAAATCTTGCAAACAATAATTTCAGAGGTCCTATACCCAATACCTGGGGTCAACTGTCCAATTTAAAGCATTTGGTATTGAGGGGTAACCACATATCTGGACATATTCCGGATTCACTTTCAAATATTAGCGGGTTGACTGAACTGGATCTTTCATCGAATGAGTTAACCGGAAGAGTTCCAATGCAATTCTTTACAATTCCAAAATTCAATTTTACAGGAGCACGTCTTGCTTGTGGTTCTAGCTTGAAGCAGCCTTGTGCTTCTGGCTCTGTTCTCCGAGGTTTATTCTTTGTACAACTCTACTATTTCAGTTTACCAACTATGTTTGAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

9.24

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19670
malus_domestica	MD00G1124100.v1.1 MD04G1039800.v1.1
prunus_persica	Prupe.4G284500_v2.0.a1 Prupe.4G284500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484661
rosa_multiflora	Rmu_sc0007498.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	4 cut(s)	141, 229, 268, 350
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	261, 355
BfmI	CTRYAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	63, 298
BsaWI	WCCGGW	2 cut(s)	127, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	63, 298
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	128, 189
BslI	CCNNNNNNNGG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	127
BspPI	GGATC	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	63, 298
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	313
BstEII	GGTNACC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	314
CviJI	RGCY	3 cut(s)	264, 274, 288
CviKI_1	RGCY	3 cut(s)	264, 274, 288
CviQI	GTAC	1 cut(s)	314
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DraI	TTTAAA	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	62
FaiI	YATR	4 cut(s)	53, 113, 123, 344
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	261, 355
GluI	GCNGC	1 cut(s)	272
HapII	CCGG	2 cut(s)	128, 189
HincII	GTYRAC	3 cut(s)	71, 156, 186
HindII	GTYRAC	3 cut(s)	71, 156, 186
HinfI	GANTC	2 cut(s)	16, 131
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	128, 189
Hpy166II	GTNNAC	4 cut(s)	71, 156, 186, 335
Hpy188I	TCNGA	2 cut(s)	44, 299
Hpy188III	TCNNGA	2 cut(s)	117, 128
Hpy8I	GTNNAC	4 cut(s)	71, 156, 186, 335
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	29, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	127
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	49, 76, 102, 141, 149, 202, 222, 270
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	261, 355
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	204
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	6 cut(s)	37, 79, 206, 216, 224, 229
MnlI	CCTC	3 cut(s)	38, 93, 293
MroI	TCCGGA	1 cut(s)	127
MseI	TTAA	2 cut(s)	83, 185
MspI	CCGG	2 cut(s)	128, 189
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	16, 131
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	273
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	83, 185
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	49, 65, 247, 266, 304
SfcI	CTRYAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	6 cut(s)	37, 79, 206, 216, 224, 229
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	261, 355
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	37, 79, 206, 216, 224, 229
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	16, 131
Tru1I	TTAA	2 cut(s)	83, 185
Tru9I	TTAA	2 cut(s)	83, 185
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	2 cut(s)	261, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.