RchiOBHm_Chr3g0484661
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
31050203 .. 31056050
5848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44937

Sequence Viewer

Length: 735 bp
ATGTCTGAAGCATCTTCTAGATGGCATCCTTTAAAGCCAATCATAAGTTGGCTGATGGCACTCATTTTGCTCAAAATCAGTTTTGCATCTACAGAGCCTGATGTTGAAGGTGAAGCATTAATCGATTTGCTTAATGCACTGAATGATTCCAATGGCCGAATAACTGATTGGAATAATCATCTTGTGAGCCCATGTTTTAGCTGGTCTCATGTCACTTGTAGAAATGGAAATGTCATATCCCTGAGCCTGGCATCAAATGGATTTTCTGGAACACTTTCTCCTTCCGTTATCAAACTCAAATTTTTGTCCAGCCTGGACTTCCAGGATAATAGTCTAACGGGTCTGTTACCCGTTTATCTTGCCAACTTGACACATCTCCAGAATCTAAACCTTGCAAATAATAACTTCAGAGGTCCTATACCCAATACATGGGGTCAACTTTCCAATCTAAAGCACTTGGTTTTGAGGGGTAATGACATCTCTGGTGATATTCCGGATTCACTTTCTAATATCACAGGGTTGACTGAATTGGATCTTTCATCTAATGATCTAGCGGGAAAAATTCCGGTGCAACTCTTCACGGTTCCGACTTTCAATTTTACAGGAACTCAACTTACTTGTGGTTCTAGCTTGAACCAGCCTTGTGCTTCTGGCTCTTCACTCGGTGGTTTATTCTTTGTTCAAAAATACTGTGTCAGTTTACCGATTATGTTTATGTTACTAAACAAAACCTGA

Protein Analysis

244

Amino Acids

26.48

Weight (kDa)

5.89

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 36 - 73 8.3e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 91 - 182 3.6e-07 Leucine-rich repeat region
LRR_8 PF13855 145 - 184 5.1e-07 Leucine rich repeat
LRR_4 PF12799 149 - 184 1.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19670
malus_domestica MD00G1124100.v1.1 MD04G1039800.v1.1
prunus_persica Prupe.4G284500_v2.0.a1 Prupe.4G284500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484661
rosa_multiflora Rmu_sc0007498.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 429
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 1 cut(s) 554
AclWI GGATC 1 cut(s) 540
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 299, 561
AcuI CTGAAG 2 cut(s) 27, 391
AdeI CACNNNGTG 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 247, 429
AgsI TTSAA 4 cut(s) 107, 595, 634, 683
AjnI CCWGG 3 cut(s) 246, 312, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AloI GAACNNNNNNTCC 2 cut(s) 262, 294
AluBI AGCT 2 cut(s) 201, 630
AluI AGCT 2 cut(s) 201, 630
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 540
AlwNI CAGNNNCTG 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 2 cut(s) 299, 561
AseI ATTAAT 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 122, 497
AvaII GGWCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 191
BccI CCATC 2 cut(s) 15, 49
BciT130I CCWGG 3 cut(s) 248, 314, 323
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 18, 551, 627
BfmI CTRYAG 1 cut(s) 90
Bme1390I CCNGG 3 cut(s) 248, 314, 323
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 3 cut(s) 248, 314, 323
BmsI GCATC 4 cut(s) 20, 34, 95, 260
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 210
BsaWI WCCGGW 2 cut(s) 493, 565
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 429
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 3 cut(s) 248, 314, 323
BseCI ATCGAT 1 cut(s) 123
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 247, 429
BseMII CTCAG 1 cut(s) 233
BshFI GGCC 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 123
BsiSI CCGG 2 cut(s) 494, 566
BslI CCNNNNNNNGG 2 cut(s) 247, 429
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 191
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 2 cut(s) 532, 547
BspACI CCGC 1 cut(s) 554
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 585
BspPI GGATC 1 cut(s) 540
BspQI GCTCTTC 1 cut(s) 661
BspTNI GGTCTC 1 cut(s) 210
BssMI GATC 2 cut(s) 532, 547
Bst2UI CCWGG 3 cut(s) 248, 314, 323
Bst4CI ACNGT 2 cut(s) 583, 692
Bst6I CTCTTC 2 cut(s) 581, 661
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 2 cut(s) 535, 550
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 532, 547
BstNI CCWGG 3 cut(s) 248, 314, 323
BstSCI CCNGG 3 cut(s) 246, 312, 321
BstSFI CTRYAG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 137
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 413
ClaI ATCGAT 1 cut(s) 123
CviAII CATG 3 cut(s) 192, 209, 429
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 534, 549
DpnII GATC 2 cut(s) 532, 547
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 1 cut(s) 665
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 581, 661
EarI CTCTTC 2 cut(s) 581, 661
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 27, 391
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 3 cut(s) 246, 312, 321
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 3 cut(s) 195, 212, 432
FaiI YATR 8 cut(s) 44, 193, 210, 236, 419, 430, 710, 716
FatI CATG 3 cut(s) 191, 208, 428
FauI CCCGC 1 cut(s) 547
FokI GGATG 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 191
FspBI CTAG 3 cut(s) 18, 551, 627
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 494, 566
Hin1II CATG 3 cut(s) 195, 212, 432
HincII GTYRAC 2 cut(s) 437, 522
HindII GTYRAC 2 cut(s) 437, 522
HinfI GANTC 3 cut(s) 146, 382, 497
HpaII CCGG 2 cut(s) 494, 566
HphI GGTGA 2 cut(s) 122, 497
Hpy166II GTNNAC 3 cut(s) 437, 522, 701
Hpy188I TCNGA 3 cut(s) 7, 410, 588
Hpy188III TCNNGA 4 cut(s) 18, 267, 379, 494
Hpy8I GTNNAC 3 cut(s) 437, 522, 701
HpyAV CCTTC 2 cut(s) 101, 291
HpyCH4III ACNGT 2 cut(s) 583, 692
HpyCH4V TGCA 4 cut(s) 86, 137, 395, 571
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 3 cut(s) 195, 212, 432
Kpn2I TCCGGA 1 cut(s) 493
Kzo9I GATC 2 cut(s) 532, 547
LguI GCTCTTC 1 cut(s) 661
LweI GCATC 4 cut(s) 20, 34, 95, 260
MaeI CTAG 3 cut(s) 18, 551, 627
MaeIII GTNAC 3 cut(s) 211, 345, 717
MalI GATC 2 cut(s) 534, 549
MboI GATC 2 cut(s) 532, 547
MboII GAAGA 3 cut(s) 6, 568, 648
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 4 cut(s) 299, 527, 561, 595
MmeI TCCRAC 1 cut(s) 611
MnlI CCTC 2 cut(s) 404, 459
MroI TCCGGA 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 3 cut(s) 32, 119, 132
MspI CCGG 2 cut(s) 494, 566
MspR9I CCNGG 3 cut(s) 248, 314, 323
MvaI CCWGG 3 cut(s) 248, 314, 323
NdeII GATC 2 cut(s) 532, 547
NlaIII CATG 3 cut(s) 195, 212, 432
NlaIV GGNNCC 1 cut(s) 585
NmuCI GTSAC 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 146, 382, 497
PflMI CCANNNNNTGG 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 321
PpuMI RGGWCCY 1 cut(s) 413
PshBI ATTAAT 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 246, 312, 321
PspGI CCWGG 3 cut(s) 246, 312, 321
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 413
PspPPI RGGWCCY 1 cut(s) 413
PsrI GAACNNNNNNTAC 2 cut(s) 598, 630
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 532
SapI GCTCTTC 1 cut(s) 661
SaqAI TTAA 3 cut(s) 32, 119, 132
Sau3AI GATC 2 cut(s) 532, 547
Sau96I GGNCC 1 cut(s) 413
ScrFI CCNGG 3 cut(s) 248, 314, 323
SduI GDGCHC 1 cut(s) 191
SetI ASST 6 cut(s) 112, 203, 393, 415, 632, 734
SfaNI GCATC 4 cut(s) 20, 34, 95, 260
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 413
Sse9I AATT 4 cut(s) 299, 527, 561, 595
SsiI CCGC 1 cut(s) 554
SspMI CTAG 3 cut(s) 18, 551, 627
StyD4I CCNGG 3 cut(s) 246, 312, 321
TaaI ACNGT 2 cut(s) 583, 692
TaqI TCGA 1 cut(s) 123
TasI AATT 4 cut(s) 299, 527, 561, 595
TfiI GAWTC 3 cut(s) 146, 382, 497
Tru1I TTAA 3 cut(s) 32, 119, 132
Tru9I TTAA 3 cut(s) 32, 119, 132
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 413
VspI ATTAAT 1 cut(s) 119
XapI RAATTY 2 cut(s) 299, 561
XbaI TCTAGA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 2 cut(s) 45, 198
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 3 cut(s) 18, 551, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.