Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011857

Physical Location & Seq

Genomic Coordinates Reverse (-)

3459746 .. 3462801

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G029500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGCAACAAGCAGCCAGTGAAGCTAGACGACGAGCAAATCGCGGACCTGCGTGAAATATTCCGGTCGTTTGATCGAAACAACGACGGAAGCCTAACACAGCTGGAGCTGGGGTCTCTTCTGCGCTCACTGGGGCTGAAACCAGGGCCTGATCAGCTGGATACCTTGATCCAGAAGGCAGACACCAACAGCAATGGCCTTGTGGAGTTTTCGGAGTTCGTAGCCCTCGTAGCCCCCGAGCTTGTGTCGGCCAAGTCTCCTTACACGGAGGACCAGCTGAGGCAGCTGTTTCGAATGTTTGACCGGGACGGCAACGGATTCATCACAGCTGCTGAGCTGGCTCACTCCATGGCTAAACTCGGACACGCTCTTACGGCTGAGGAGTTGACTGGGATGATCAGGGAGGCTGATACTGATGGGGATGGCAGGATCGATTTCCAGGAGTTTGCTCATGCCATTACTTCTGCTGCTTTTGATAATTCTTGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

164

Amino Acids

18.01

Weight (kDa)

4.49

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32250
fragaria_vesca	FvH4_2g21960
malus_domestica	MD06G1025600.v1.1
prunus_persica	Prupe.5G029500_v2.0.a1 Prupe.5G029500_v2.0.a1 Prupe.5G029500_v2.0.a1 Prupe.5G029500_v2.0.a1
pyrus_communis	pycom06g02080
rosa_chinensis	RchiOBHm_Chr7g0211631
rosa_laevigata	RLG00000002989
rosa_multiflora	Rmu_co8496803.1_g000001 Rmu_sc0003760.1_g000016 Rmu_sc0004232.1_g000011
rosa_roxburghii	Rroxscaffold_3G00247660
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259100 Rh7BG253400 Rh7DG266700
rosa_wichuraiana	Rw7G022150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccII	CGCG	1 cut(s)	44
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	163, 437
AcoI	YGGCCR	1 cut(s)	249
AjnI	CCWGG	2 cut(s)	142, 438
AluBI	AGCT	9 cut(s)	25, 103, 109, 157, 241, 277, 286, 329, 337
AluI	AGCT	9 cut(s)	25, 103, 109, 157, 241, 277, 286, 329, 337
Alw26I	GTCTC	2 cut(s)	120, 261
AlwI	GGATC	2 cut(s)	163, 437
AlwNI	CAGNNNCTG	2 cut(s)	149, 332
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	146, 196, 249
ApeKI	GCWGC	4 cut(s)	13, 283, 329, 467
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	3 cut(s)	46, 146, 271
AsuC2I	CCSGG	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	46, 271
BbvCI	CCTCAGC	2 cut(s)	278, 378
BbvI	GCAGC	4 cut(s)	25, 295, 316, 454
BccI	CCATC	2 cut(s)	410, 416
BceAI	ACGGC	2 cut(s)	325, 390
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	2 cut(s)	144, 440
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	2 cut(s)	151, 396
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	120, 261
BfaI	CTAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	4 cut(s)	14, 284, 330, 468
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	4 cut(s)	15, 285, 331, 469
Bme1390I	CCNGG	3 cut(s)	144, 305, 440
Bme18I	GGWCC	2 cut(s)	46, 271
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	46, 146, 271
BmrFI	CCNGG	3 cut(s)	144, 305, 440
BmrI	ACTGGG	2 cut(s)	140, 399
BmuI	ACTGGG	2 cut(s)	140, 399
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	2 cut(s)	278, 378
Bpu1102I	GCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	143, 348
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse1I	ACTGG	3 cut(s)	17, 135, 394
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	144, 440
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	143, 348
BseGI	GGATG	2 cut(s)	399, 427
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	3 cut(s)	269, 324, 369
BseNI	ACTGG	3 cut(s)	17, 135, 394
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	4 cut(s)	25, 295, 316, 454
BseYI	CCCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	3 cut(s)	148, 198, 251
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	64, 304
BslFI	GGGAC	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	120, 261
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	148, 198, 251
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	73, 151, 168, 396, 429
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	3 cut(s)	148, 198, 251
BspCNI	CTCAG	3 cut(s)	270, 325, 370
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	163, 437
BspT104I	TTCGAA	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	3 cut(s)	17, 135, 394
BssECI	CCNNGG	2 cut(s)	143, 348
BssMI	GATC	5 cut(s)	73, 151, 168, 396, 429
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	144, 440
Bst6I	CTCTTC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	4 cut(s)	278, 333, 378, 489
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	399, 427
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	5 cut(s)	76, 154, 171, 399, 432
BstMAI	GTCTC	2 cut(s)	120, 261
BstMBI	GATC	5 cut(s)	73, 151, 168, 396, 429
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 154, 230, 283, 338, 374
BstNI	CCWGG	2 cut(s)	144, 440
BstSCI	CCNGG	3 cut(s)	142, 303, 438
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	4 cut(s)	25, 295, 316, 454
Bsu15I	ATCGAT	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	148, 198, 251
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	399, 427
BtsIMutI	CAGTG	2 cut(s)	24, 128
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	2 cut(s)	149, 332
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	46, 146, 271
ClaI	ATCGAT	1 cut(s)	432
CviAII	CATG	2 cut(s)	349, 452
DdeI	CTNAG	4 cut(s)	278, 333, 378, 489
DpnI	GATC	5 cut(s)	75, 153, 170, 398, 431
DpnII	GATC	5 cut(s)	73, 151, 168, 396, 429
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	46, 271
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	142, 438
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	352, 455
FaiI	YATR	2 cut(s)	350, 453
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	348, 451
FbaI	TGATCA	2 cut(s)	151, 396
Fnu4HI	GCNGC	4 cut(s)	14, 284, 330, 468
FokI	GGATG	2 cut(s)	406, 434
Fsp4HI	GCNGC	4 cut(s)	14, 284, 330, 468
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	4 cut(s)	14, 284, 330, 468
GsaI	CCCAGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	148, 198, 251
HapII	CCGG	2 cut(s)	64, 304
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	352, 455
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	2 cut(s)	64, 304
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	214, 362
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	2 cut(s)	35, 89
HpyAV	CCTTC	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 154, 230, 283, 338, 374
HpyF3I	CTNAG	4 cut(s)	278, 333, 378, 489
Hsp92II	CATG	2 cut(s)	352, 455
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	2 cut(s)	151, 396
Kzo9I	GATC	5 cut(s)	73, 151, 168, 396, 429
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	4 cut(s)	25, 295, 316, 454
MaeI	CTAG	1 cut(s)	26
MalI	GATC	5 cut(s)	75, 153, 170, 398, 431
MboI	GATC	5 cut(s)	73, 151, 168, 396, 429
MboII	GAAGA	1 cut(s)	110
MluCI	AATT	1 cut(s)	478
MnlI	CCTC	5 cut(s)	236, 262, 273, 373, 397
MspA1I	CMGCKG	5 cut(s)	103, 157, 277, 286, 329
MspI	CCGG	2 cut(s)	64, 304
MspR9I	CCNGG	3 cut(s)	144, 305, 440
MvaI	CCWGG	2 cut(s)	144, 440
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	6 cut(s)	22, 154, 230, 283, 338, 374
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	5 cut(s)	73, 151, 168, 396, 429
NlaIII	CATG	2 cut(s)	352, 455
NspV	TTCGAA	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 234
PfeI	GAWTC	1 cut(s)	318
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	15, 285, 331, 469
Psp6I	CCWGG	2 cut(s)	142, 438
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	2 cut(s)	142, 438
PspPI	GGNCC	3 cut(s)	46, 146, 271
PstNI	CAGNNNCTG	2 cut(s)	149, 332
PvuII	CAGCTG	5 cut(s)	103, 157, 277, 286, 329
SatI	GCNGC	4 cut(s)	14, 284, 330, 468
Sau3AI	GATC	5 cut(s)	73, 151, 168, 396, 429
Sau96I	GGNCC	3 cut(s)	46, 146, 271
ScrFI	CCNGG	3 cut(s)	144, 305, 440
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	2 cut(s)	46, 271
Sse9I	AATT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	142, 303, 438
StyI	CCWWGG	1 cut(s)	348
TaqI	TCGA	3 cut(s)	76, 292, 432
TasI	AATT	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	2 cut(s)	24, 135
TseI	GCWGC	4 cut(s)	13, 283, 329, 467
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	3 cut(s)	102, 281, 330
TspRI	CASTG	2 cut(s)	24, 135
VpaK11BI	GGWCC	2 cut(s)	46, 271
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.