Prupe.5G041600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
4553639 .. 4553872
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G041600.1

Sequence Viewer

Length: 234 bp
ATGGATAGCAGAGGAGCATGCAAGGAGGTTTCTGATGAGCTGGCCAGGGAGTTGCTTATTGCAATTTCTCACCCTGTACCAGACCAGGTTCTTGATCTGAGTTTCGTGCCTCGGGACAGGGTTCTTGTGGCAAATGGGGATGGGGATGAGAAGTTTGTCTCTGAACTTATGACCATTTCTAATGTGCCATCCCCTGATATCAAAAACCTGAAACAAGCAAGCATTTGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.41

Weight (kDa)

4.58

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019299)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 42
AfaI GTAC 1 cut(s) 78
AjnI CCWGG 2 cut(s) 44, 84
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 111
BalI TGGCCA 1 cut(s) 44
BccI CCATC 2 cut(s) 134, 196
BciT130I CCWGG 2 cut(s) 46, 86
BcoDI GTCTC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 46, 86
BmeT110I CYCGRG 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 46, 86
BsaJI CCNNGG 2 cut(s) 45, 110
BseBI CCWGG 2 cut(s) 46, 86
BseDI CCNNGG 2 cut(s) 45, 110
BseGI GGATG 3 cut(s) 145, 151, 188
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 1 cut(s) 94
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 45, 110
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 46, 86
BstC8I GCNNGC 3 cut(s) 19, 42, 220
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 3 cut(s) 145, 151, 188
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 2 cut(s) 46, 86
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 44, 84
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 3 cut(s) 145, 151, 188
Cac8I GCNNGC 3 cut(s) 19, 42, 220
CsiI ACCWGGT 1 cut(s) 84
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 18
CviJI RGCY 2 cut(s) 40, 44
CviKI_1 RGCY 2 cut(s) 40, 44
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 42
Eco32I GATATC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 44, 84
EcoRV GATATC 1 cut(s) 199
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 170
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 17
FokI GGATG 3 cut(s) 152, 158, 175
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 1 cut(s) 21
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 34, 99, 163
Hpy188III TCNNGA 2 cut(s) 92, 113
HpyCH4V TGCA 3 cut(s) 21, 62, 228
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 14
MabI ACCWGGT 1 cut(s) 84
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 2 cut(s) 63, 229
MluNI TGGCCA 1 cut(s) 44
MnlI CCTC 3 cut(s) 5, 19, 120
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 46, 86
MvaI CCWGG 2 cut(s) 46, 86
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 21
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 44, 84
PspGI CCWGG 2 cut(s) 44, 84
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 46, 86
SetI ASST 4 cut(s) 30, 42, 90, 210
SexAI ACCWGGT 1 cut(s) 84
SphI GCATGC 1 cut(s) 21
Sse9I AATT 2 cut(s) 63, 229
StyD4I CCNGG 2 cut(s) 44, 84
TasI AATT 2 cut(s) 63, 229
XceI RCATGY 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.