Rh7CG258200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019299
Physical Location & Seq
Forward (+)
25134632 .. 25147355
12724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG258200.1

Sequence Viewer

Length: 354 bp
ATGGATAACGGAGCACTTTACAAAGACGTTTCTGAGGAGCTGGCAACTACTAGGGAGTTGCTCATTGCGATTTCTCACCCTACTGCAGATCAGGTCCGCGATATGAGTTTCGTGCCTGTGGACGTGGTTTATGTGTCAAATGGCGATGTATCGGAGCAGTACCGGTCTGAACTGATATCTATTTCTTGTGCTACTAATAAGCCTCAGGAACTAGATGACGCGGTTCTTAGGAGATTGGTAGTACATATTGAAGGGGGAGAAATTTCGACTGGAAACAAAGAAAAGAGCGCCGGCCGGTGGCCTTATAGGCGCCCGCTTTCGACCGGTGTTTTTTTAATTTTAAAGACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.99

Weight (kDa)

4.99

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 7 - 64 4.1e-13 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019299)

Species Orthologous Gene IDs
prunus_persica Prupe.5G041600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209051
rosa_roxburghii Rroxscaffold_3G00249800
rosa_rugosa Rorug07G0108400 Rorug07G0108500
rosa_samantha Rh7AG243000 Rh7BG238000 Rh7CG258200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AccII CGCG 2 cut(s) 99, 221
AciI CCGC 3 cut(s) 97, 221, 314
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 2 cut(s) 161, 243
AfiI CCNNNNNNNGG 1 cut(s) 297
AgeI ACCGGT 2 cut(s) 162, 323
AgsI TTSAA 1 cut(s) 251
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 16
AoxI GGCC 2 cut(s) 292, 299
ApoI RAATTY 1 cut(s) 261
AsiGI ACCGGT 2 cut(s) 162, 323
AspLEI GCGC 2 cut(s) 290, 312
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 94
AxyI CCTNAGG 1 cut(s) 204
BanI GGYRCC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 16
BfaI CTAG 2 cut(s) 51, 212
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 2 cut(s) 291, 313
BglI GCCNNNNNGGC 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 310
BsaWI WCCGGW 2 cut(s) 162, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 4 cut(s) 162, 290, 294, 323
Bse1I ACTGG 1 cut(s) 274
Bse21I CCTNAGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 24, 218
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 292
Bsh1236I CGCG 2 cut(s) 99, 221
Bsh1285I CGRYCG 2 cut(s) 295, 324
BshFI GGCC 2 cut(s) 294, 301
BshNI GGYRCC 1 cut(s) 309
BshTI ACCGGT 2 cut(s) 162, 323
BsiEI CGRYCG 2 cut(s) 295, 324
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 4 cut(s) 163, 291, 295, 324
BslI CCNNNNNNNGG 1 cut(s) 297
BsnI GGCC 2 cut(s) 294, 301
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 3 cut(s) 97, 221, 314
BspANI GGCC 2 cut(s) 294, 301
BspCNI CTCAG 2 cut(s) 25, 217
BspFNI CGCG 2 cut(s) 99, 221
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 4 cut(s) 162, 290, 294, 323
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 4 cut(s) 162, 290, 294, 323
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 42, 292, 314
BstDEI CTNAG 3 cut(s) 33, 204, 227
BstFNI CGCG 2 cut(s) 99, 221
BstH2I RGCGCY 2 cut(s) 291, 313
BstHHI GCGC 2 cut(s) 290, 312
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 2 cut(s) 295, 324
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 2 cut(s) 99, 221
BstZI CGGCCG 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 294, 301
BtgZI GCGATG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 42, 292, 314
CfoI GCGC 2 cut(s) 290, 312
Cfr10I RCCGGY 4 cut(s) 162, 290, 294, 323
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 160, 242
CspAI ACCGGT 2 cut(s) 162, 323
CviJI RGCY 4 cut(s) 40, 202, 294, 301
CviKI_1 RGCY 4 cut(s) 40, 202, 294, 301
CviQI GTAC 2 cut(s) 160, 242
DdeI CTNAG 3 cut(s) 33, 204, 227
DinI GGCGCC 1 cut(s) 311
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 292
EagI CGGCCG 1 cut(s) 292
EclXI CGGCCG 1 cut(s) 292
Eco32I GATATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 177
EgeI GGCGCC 1 cut(s) 311
EheI GGCGCC 1 cut(s) 311
FaiI YATR 4 cut(s) 104, 132, 246, 306
FauI CCCGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 51, 212
GlaI GCGC 2 cut(s) 289, 311
HaeII RGCGCY 2 cut(s) 291, 313
HaeIII GGCC 2 cut(s) 294, 301
HapII CCGG 4 cut(s) 163, 291, 295, 324
HgaI GACGC 1 cut(s) 227
HhaI GCGC 2 cut(s) 290, 312
Hin1I GRCGYC 1 cut(s) 310
Hin6I GCGC 2 cut(s) 288, 310
HinP1I GCGC 2 cut(s) 288, 310
HpaII CCGG 4 cut(s) 163, 291, 295, 324
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 34, 154, 169
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 245
HpyCH4IV ACGT 2 cut(s) 27, 123
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 3 cut(s) 33, 204, 227
HpySE526I ACGT 2 cut(s) 27, 123
Hsp92I GRCGYC 1 cut(s) 310
HspAI GCGC 2 cut(s) 288, 310
KasI GGCGCC 1 cut(s) 309
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 11, 37, 154
LpnPI CCDG 9 cut(s) 26, 77, 129, 176, 191, 255, 304, 308, 337
MaeI CTAG 2 cut(s) 51, 212
MaeII ACGT 2 cut(s) 27, 123
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 261, 336
Mly113I GGCGCC 1 cut(s) 310
MnlI CCTC 2 cut(s) 28, 213
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 2 cut(s) 335, 341
MspI CCGG 4 cut(s) 163, 291, 295, 324
MvnI CGCG 2 cut(s) 99, 221
MwoI GCNNNNNNNGC 1 cut(s) 307
NaeI GCCGGC 1 cut(s) 292
NarI GGCGCC 1 cut(s) 310
NdeII GATC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 311
PdiI GCCGGC 1 cut(s) 292
PinAI ACCGGT 2 cut(s) 162, 323
PluTI GGCGCC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 2 cut(s) 161, 243
RsaNI GTAC 2 cut(s) 160, 242
SaqAI TTAA 2 cut(s) 335, 341
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 16
SetI ASST 4 cut(s) 30, 42, 96, 126
SfcI CTRYAG 1 cut(s) 84
SfoI GGCGCC 1 cut(s) 311
SinI GGWCC 1 cut(s) 94
Sse9I AATT 2 cut(s) 261, 336
SsiI CCGC 3 cut(s) 97, 221, 314
SspDI GGCGCC 1 cut(s) 309
SspMI CTAG 2 cut(s) 51, 212
TaiI ACGT 2 cut(s) 30, 126
TaqI TCGA 2 cut(s) 266, 320
TasI AATT 2 cut(s) 261, 336
TatI WGTACW 1 cut(s) 241
Tru1I TTAA 2 cut(s) 335, 341
Tru9I TTAA 2 cut(s) 335, 341
TspGWI ACGGA 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 261
XspI CTAG 2 cut(s) 51, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.