Rorug07G0108500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0019299
Physical Location & Seq
Reverse (-)
8468841 .. 8469825
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0108500.1

Sequence Viewer

Length: 897 bp
ATGGAGAGTTCCATGGAAGTCGTCTCTATTAACGAGAGCCGGGGTCTGAGTTCGTATTCGTACAAGGGGCAACTCAATCTGTACATTCAATTTAAGGACCATCTTAACCGGATCAATCTTGAGAAGCTCGAGCGAAAGGAGGAACCTAAATTGGAACTAGTGGCAGATTATCGGACCGAGGGACTTCCCCTTGGAATATGTCCATTCTTGGAGATTTCAGGTAAAAAGTACATTGTTGGGGGAGAAATGACTCGTAAGATACCCGATGCTGAGTATGATTGGAAATATCAACTAGATTGGGAAGTATACAAGCCATCTGATGCCCTCAATTCTCATGTTTTTGTTTTGGATCCCTCTACCAGAAAGATCACAATTGATTGTAGTTTTCCTAAAGCAAATGCAGCAAAGACCAATGCCAAAGTCTTGGCTACCATTGATCAAAAGGTGTGGGAGCCGCTGCCTGCTCCTCCTGATTATTACGACCCTCCTAAGTCCGTGCAGAGTCCTGTTACCAGATATTATTATCATTTTGTGTTTGGCAGAGGGATTTATTTGTACACTTTAGGGGGACTCTTTAGTTTCAATGTGGATAAACCCACTGAAGGATGGAAATGGGTTGGAGACTCAAAGTGGATGCTTGATTTGGAATTTTTGCACTACCATTCAGATGGAGAAGAAGAGGTAGAAAGGGAGCCCGAGGACGATGACTCGATGCCTTTGACACCCGTTCATCCCTACCATTCAATTTGCTTTGCAGAACCAGGGAAATTTGGCCTAGCTGTGTTGGCTACACAGCTAAAGGGTTGGTGGGTTATGTCTTTGATCATGATGGCAACTTGCTATTTCAACAGCTGCTCCAGCATCATAATCTTCGTCTTCCACCTCCAGATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

34.41

Weight (kDa)

5.34

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019299)

Species Orthologous Gene IDs
prunus_persica Prupe.5G041600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209051
rosa_roxburghii Rroxscaffold_3G00249800
rosa_rugosa Rorug07G0108400 Rorug07G0108500
rosa_samantha Rh7AG243000 Rh7BG238000 Rh7CG258200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 1 cut(s) 455
AclWI GGATC 3 cut(s) 119, 344, 357
AcsI RAATTY 2 cut(s) 647, 767
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 4 cut(s) 62, 83, 230, 557
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 4 cut(s) 89, 583, 744, 847
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 760
AluBI AGCT 4 cut(s) 127, 779, 796, 852
AluI AGCT 4 cut(s) 127, 779, 796, 852
Alw26I GTCTC 2 cut(s) 28, 615
AlwI GGATC 3 cut(s) 119, 344, 357
Ama87I CYCGRG 2 cut(s) 128, 695
AoxI GGCC 1 cut(s) 772
ApeKI GCWGC 3 cut(s) 401, 457, 852
ApoI RAATTY 2 cut(s) 647, 767
AspS9I GGNCC 2 cut(s) 97, 174
AsuC2I CCSGG 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 128, 695
AvaII GGWCC 2 cut(s) 97, 174
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 868
BbvI GCAGC 3 cut(s) 413, 444, 839
BccI CCATC 5 cut(s) 108, 322, 600, 662, 823
BciT130I CCWGG 1 cut(s) 762
BclI TGATCA 2 cut(s) 436, 822
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 28, 615
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 293, 776
BisI GCNGC 4 cut(s) 402, 455, 458, 853
BlsI GCNGC 4 cut(s) 403, 456, 459, 854
Bme1390I CCNGG 2 cut(s) 41, 762
Bme18I GGWCC 2 cut(s) 97, 174
BmeT110I CYCGRG 2 cut(s) 128, 695
BmgT120I GGNCC 2 cut(s) 97, 174
BmiI GGNNCC 4 cut(s) 144, 351, 453, 693
BmrFI CCNGG 2 cut(s) 41, 762
BmsI GCATC 5 cut(s) 256, 310, 624, 702, 870
BpiI GAAGAC 1 cut(s) 868
BpmI CTGGAG 2 cut(s) 841, 869
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 6 cut(s) 12, 40, 177, 190, 696, 761
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 1 cut(s) 602
BseBI CCWGG 1 cut(s) 762
BseDI CCNNGG 6 cut(s) 12, 40, 177, 190, 696, 761
BseGI GGATG 3 cut(s) 611, 639, 730
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMII CTCAG 2 cut(s) 38, 261
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 3 cut(s) 413, 444, 839
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 1 cut(s) 774
BsiHKCI CYCGRG 2 cut(s) 128, 695
BsiSI CCGG 2 cut(s) 40, 109
BslFI GGGAC 2 cut(s) 195, 582
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 2 cut(s) 28, 615
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 195, 582
BsnI GGCC 1 cut(s) 774
BsoBI CYCGRG 2 cut(s) 128, 695
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 2 cut(s) 81, 555
Bsp143I GATC 6 cut(s) 111, 349, 366, 436, 822, 888
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 455
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 2 cut(s) 39, 262
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 4 cut(s) 144, 351, 453, 693
BspPI GGATC 3 cut(s) 119, 344, 357
BsrGI TGTACA 2 cut(s) 81, 555
BssECI CCNNGG 6 cut(s) 12, 40, 177, 190, 696, 761
BssMI GATC 6 cut(s) 111, 349, 366, 436, 822, 888
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 12, 190
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 762
Bst6I CTCTTC 1 cut(s) 672
BstAUI TGTACA 2 cut(s) 81, 555
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 47, 270, 489
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 611, 639, 730
BstKTI GATC 6 cut(s) 114, 352, 369, 439, 825, 891
BstMAI GTCTC 2 cut(s) 28, 615
BstMBI GATC 6 cut(s) 111, 349, 366, 436, 822, 888
BstMWI GCNNNNNNNGC 3 cut(s) 401, 785, 858
BstNI CCWGG 1 cut(s) 762
BstSCI CCNGG 2 cut(s) 39, 760
BstV1I GCAGC 3 cut(s) 413, 444, 839
BstV2I GAAGAC 1 cut(s) 868
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 2 cut(s) 424, 668
BstYI RGATCY 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 774
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 611, 639, 730
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 825
Cfr13I GGNCC 2 cut(s) 97, 174
CpoI CGGWCCG 1 cut(s) 174
Csp6I GTAC 4 cut(s) 61, 82, 229, 556
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CspI CGGWCCG 1 cut(s) 174
CviAII CATG 3 cut(s) 13, 335, 826
CviQI GTAC 4 cut(s) 61, 82, 229, 556
DdeI CTNAG 3 cut(s) 47, 270, 489
DpnI GATC 6 cut(s) 113, 351, 368, 438, 824, 890
DpnII GATC 6 cut(s) 111, 349, 366, 436, 822, 888
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 12, 190
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 97, 174
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 2 cut(s) 128, 695
EcoRII CCWGG 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 12, 190
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 2 cut(s) 12, 190
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 3 cut(s) 16, 338, 829
FaiI YATR 8 cut(s) 14, 199, 276, 307, 336, 815, 827, 866
FaqI GGGAC 2 cut(s) 195, 582
FatI CATG 3 cut(s) 12, 334, 825
FbaI TGATCA 2 cut(s) 436, 822
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 402, 455, 458, 853
FokI GGATG 3 cut(s) 618, 646, 717
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 4 cut(s) 402, 455, 458, 853
FspBI CTAG 3 cut(s) 158, 293, 776
GluI GCNGC 4 cut(s) 402, 455, 458, 853
GsuI CTGGAG 2 cut(s) 841, 869
HaeIII GGCC 1 cut(s) 774
HapII CCGG 2 cut(s) 40, 109
Hin1II CATG 3 cut(s) 16, 338, 829
HinfI GANTC 5 cut(s) 250, 502, 570, 623, 707
HpaII CCGG 2 cut(s) 40, 109
Hpy166II GTNNAC 2 cut(s) 307, 558
Hpy188I TCNGA 5 cut(s) 48, 174, 319, 667, 893
Hpy188III TCNNGA 4 cut(s) 119, 470, 826, 886
Hpy8I GTNNAC 2 cut(s) 307, 558
HpyAV CCTTC 1 cut(s) 596
HpyCH4V TGCA 4 cut(s) 401, 499, 655, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 785, 858
HpyF3I CTNAG 3 cut(s) 47, 270, 489
Hsp92II CATG 3 cut(s) 16, 338, 829
Ksp22I TGATCA 2 cut(s) 436, 822
Kzo9I GATC 6 cut(s) 111, 349, 366, 436, 822, 888
LmnI GCTCC 4 cut(s) 451, 469, 691, 860
Lsp1109I GCAGC 3 cut(s) 413, 444, 839
LweI GCATC 5 cut(s) 256, 310, 624, 702, 870
MaeI CTAG 3 cut(s) 158, 293, 776
MaeIII GTNAC 1 cut(s) 508
MalI GATC 6 cut(s) 113, 351, 368, 438, 824, 890
MboI GATC 6 cut(s) 111, 349, 366, 436, 822, 888
MboII GAAGA 4 cut(s) 686, 689, 862, 868
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 7 cut(s) 89, 149, 328, 372, 647, 744, 767
MlyI GAGTC 5 cut(s) 244, 511, 564, 617, 701
MmeI TCCRAC 1 cut(s) 598
MseI TTAA 3 cut(s) 30, 93, 105
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 2 cut(s) 457, 852
MspI CCGG 2 cut(s) 40, 109
MspR9I CCNGG 2 cut(s) 41, 762
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 762
MwoI GCNNNNNNNGC 3 cut(s) 401, 785, 858
NciI CCSGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 12
NdeII GATC 6 cut(s) 111, 349, 366, 436, 822, 888
NlaIII CATG 3 cut(s) 16, 338, 829
NlaIV GGNNCC 4 cut(s) 144, 351, 453, 693
PaeR7I CTCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 825
PkrI GCNGC 4 cut(s) 403, 456, 459, 854
PleI GAGTC 5 cut(s) 244, 510, 564, 617, 701
PpsI GAGTC 5 cut(s) 244, 510, 564, 617, 701
Psp6I CCWGG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 760
PspN4I GGNNCC 4 cut(s) 144, 351, 453, 693
PspPI GGNCC 2 cut(s) 97, 174
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 852
RsaI GTAC 4 cut(s) 62, 83, 230, 557
RsaNI GTAC 4 cut(s) 61, 82, 229, 556
RseI CAYNNNNRTG 1 cut(s) 666
Rsr2I CGGWCCG 1 cut(s) 174
RsrII CGGWCCG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 30, 93, 105
SatI GCNGC 4 cut(s) 402, 455, 458, 853
Sau3AI GATC 6 cut(s) 111, 349, 366, 436, 822, 888
Sau96I GGNCC 2 cut(s) 97, 174
SchI GAGTC 5 cut(s) 244, 511, 564, 617, 701
ScrFI CCNGG 2 cut(s) 41, 762
SduI GDGCHC 1 cut(s) 696
SetI ASST 9 cut(s) 129, 148, 223, 447, 684, 781, 798, 854, 885
SfaNI GCATC 5 cut(s) 256, 310, 624, 702, 870
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 2 cut(s) 97, 174
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 119, 128
SmoI CTYRAG 2 cut(s) 119, 128
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 7 cut(s) 89, 149, 328, 372, 647, 744, 767
SsiI CCGC 1 cut(s) 455
SspMI CTAG 3 cut(s) 158, 293, 776
StyD4I CCNGG 2 cut(s) 39, 760
StyI CCWWGG 2 cut(s) 12, 190
TaqI TCGA 2 cut(s) 129, 710
TaqII GACCGA 1 cut(s) 191
TasI AATT 7 cut(s) 89, 149, 328, 372, 647, 744, 767
TatI WGTACW 3 cut(s) 81, 228, 555
TauI GCSGC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 30, 93, 105
Tru9I TTAA 3 cut(s) 30, 93, 105
TscAI CASTG 1 cut(s) 604
TseI GCWGC 3 cut(s) 401, 457, 852
TspDTI ATGAA 1 cut(s) 719
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 97, 174
XapI RAATTY 2 cut(s) 647, 767
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 158, 293, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.