Rh7BG238000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
21044222 .. 21046224
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG238000.1

Sequence Viewer

Length: 327 bp
ATGGATAACGGAGCACCTTATAAAGACGTTTCTGAGGAGCTGGCAACGACTAGGGAGTTGCTCATTGCGATTTCTCACCCTGTTGGAGTTCAGGTCCGCGATTTGAGTTTCGTGCCTGTGGACGGGCTTGCAGTGTCAAATGGCGATGTATCGGAGCAGTACCGGTGGTGTTTGTATGAAAAGGTTGGTGTTGTAATTCAGTTGCCTTTCAACTTGTATGGACGATTAGACTCTGCAAAACTTGGTTTCGGGGTTAAGGAAGAGGCTAGGTATCAAACTTTGAACTTCATTAGACATAATATAAAATACCACTACATTTGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.25

Weight (kDa)

5.86

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019299)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AfaI GTAC 2 cut(s) 161, 322
AfiI CCNNNNNNNGG 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 211, 283
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 16
AsiGI ACCGGT 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 94
BaeI ACNNNNGTAYC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 16
BfaI CTAG 2 cut(s) 51, 267
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 99
BshTI ACCGGT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 16
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 42, 129
BstDEI CTNAG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 99
BstUI CGCG 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 42, 129
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 160, 321
CspAI ACCGGT 1 cut(s) 162
CspCI CAANNNNNGTGG 1 cut(s) 299
CviJI RGCY 3 cut(s) 40, 127, 266
CviKI_1 RGCY 3 cut(s) 40, 127, 266
CviQI GTAC 2 cut(s) 160, 321
DdeI CTNAG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 94
FaiI YATR 5 cut(s) 21, 177, 219, 297, 302
FspBI CTAG 2 cut(s) 51, 267
HapII CCGG 1 cut(s) 163
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 34, 154
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 131, 236
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 27
LmnI GCTCC 3 cut(s) 11, 37, 154
LpnPI CCDG 5 cut(s) 26, 77, 93, 129, 176
MaeI CTAG 2 cut(s) 51, 267
MaeII ACGT 1 cut(s) 27
MboII GAAGA 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 28, 256
MseI TTAA 1 cut(s) 255
MspI CCGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 162
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PsiI TTATAA 1 cut(s) 21
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 2 cut(s) 161, 322
RsaNI GTAC 2 cut(s) 160, 321
SaqAI TTAA 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 19, 30, 42, 96, 186, 272, 326
SinI GGWCC 1 cut(s) 94
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 97
SspMI CTAG 2 cut(s) 51, 267
TaiI ACGT 1 cut(s) 30
TasI AATT 1 cut(s) 195
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 192, 277
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 94
XspI CTAG 2 cut(s) 51, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.