Rh7AG243000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019299
Physical Location & Seq
Forward (+)
23911629 .. 23913921
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG243000.1

Sequence Viewer

Length: 255 bp
ATGGATAACGGAGCACTTTACAAAGACGTTTCTGAGGAGCTGGCAACTACGAGGGAGTTGCTCATTGCGATTTCTCACCCTACTGCAGATCAGGTCCGCAATTTGAGTTTCGTGCCTGTGGACGTGGTTGATGTGTCAAATGGCGATGTCTCGGAGCAGTACCGACTCTCTGCAAAACTTGGTTTTGGGGTTAAGGAAGAGGCTAGGTATCAAACTTTGAACTTCATTCGACATAATTGCTCTATTTGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

4.94

Isoelectric Point (pI)

21.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 7 - 55 4e-07 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019299)

Species Orthologous Gene IDs
prunus_persica Prupe.5G041600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209051
rosa_roxburghii Rroxscaffold_3G00249800
rosa_rugosa Rorug07G0108400 Rorug07G0108500
rosa_samantha Rh7AG243000 Rh7BG238000 Rh7CG258200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AfaI GTAC 2 cut(s) 161, 250
AgsI TTSAA 1 cut(s) 220
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 16
BcgI CGANNNNNNTGC 4 cut(s) 40, 74, 219, 253
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 63
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 160, 249
CviJI RGCY 2 cut(s) 40, 203
CviKI_1 RGCY 2 cut(s) 40, 203
CviQI GTAC 2 cut(s) 160, 249
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 94
FaiI YATR 1 cut(s) 234
FspBI CTAG 1 cut(s) 204
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 34, 154
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 27, 123
HpyCH4V TGCA 2 cut(s) 86, 173
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 27, 123
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 11, 37, 154
LpnPI CCDG 3 cut(s) 26, 77, 129
MaeI CTAG 1 cut(s) 204
MaeII ACGT 2 cut(s) 27, 123
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 100, 235
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 3 cut(s) 28, 45, 193
MseI TTAA 1 cut(s) 192
NdeII GATC 1 cut(s) 88
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 2 cut(s) 161, 250
RsaNI GTAC 2 cut(s) 160, 249
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 16
SetI ASST 6 cut(s) 30, 42, 96, 126, 209, 254
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 9 cut(s) 53, 63, 104, 124, 128, 136, 163, 191, 216
SinI GGWCC 1 cut(s) 94
Sse9I AATT 2 cut(s) 100, 235
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 204
TaiI ACGT 2 cut(s) 30, 126
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 100, 235
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 94
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.