Prupe.5G122000_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12133816 .. 12136612
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G122000.1

Sequence Viewer

Length: 1197 bp
ATGGCGATCAATCTTCTTCTTGTTACTTTGCTCTGCATTCTCATCTCAACCGTTGTTTCACAGCCTGGCTCTCCTCCATTTCCTCAAGAACTCATCAATGCCATCATCGGCCCCACTCCTTCACCTTCTTCTTCTTCAATCCCTCCAACCCCAACACCCTCAATCCCACAGACTCCTCTTGTCCCTGCTCTCTTTGTCATCGGCGACTCCTCTGTCGACTGTGGCAACAACAATTTCCTTGGAACTTTCGCTCGTGCTGACCACCTTCCCTACGGTCGAGATTTCGATACCCACCAACCCACTGGGAGGTTCTGTAATGGCAGAATCCCTGTTGATTATCTTGCACTTCGTCTCGGGCTGCCTTTTGTACCGAGTTATCTTGGGCAGAATGGAAGAGTGGAAGGTATGATTCAGGGATTGAATTATGCATCAGCTGGTGCTGGAATCATATTCACCAGTGGTTCGGAATTGGGTCAACATGTTTCCTTCACCCAGCAAGTTCAGCAGTTTACAGATACCTACCAGCAGTTTATATTAAGTTTGGGCGAGCAAGCTGCTATTGATCTCATCTCGAATTCAGTGCTTTACATTTCAATTGGAATCAATGACTATATACATTACTATTTGCGTAATGTATCTAACGTGCAAAATCTGTATCTACCGTGGAGTTTCAATCAGTTTTTAGCATCTACATTGAGGCAGGAAATTAAGAACTTGTACAGCATAAATGTCATGAAGGTGGTTGTGATAGGGCTGGCACCTATAGGCTGCGCTCCTCACTACTTATCTCAGTACAGAATGAAGGATGGACAGTGTGTTGAGGAGATAAACGACACGGTGATGGAGTTCAACTTTTTGATGAGGTATATGATTGAGGAGCTACGTGAAGAGCTTCCTGATTCCAACATCATCTTCTGTGATGTGTTTGAAGGTTCGATGGATATAATAAAAAACTCTGAACATCATGGTTTGAATGCCACAGCTGATGCTTGCTGTGGGTTGGGGGAGTACAAGGGTTTTGTCATGTGCTTATCACCAGAAATGGCTTGCAGTAATGCTTCTAACCATATCTGGTGGGATCAATTCCATCCAACTGATGCAGTCAATGCCATCCTGGCTGACAATGTGTGGAATGGCCTGCACACAAAAATGTGCTATCCCATGAACTTGGAGGAAATGGTAGCGTTTGACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

399

Amino Acids

44.05

Weight (kDa)

4.67

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10950 AT4G10950
fragaria_vesca FvH4_5g04800
malus_domestica MD06G1109100.v1.1
prunus_persica Prupe.5G122000_v2.0.a1
pyrus_communis pycom06g10240
rosa_chinensis RchiOBHm_Chr7g0194451
rosa_laevigata RLG00000004200
rosa_multiflora Rmu_sc0030308.1_g000001 Rmu_ssc0000261.1_g000027
rosa_roxburghii Rroxscaffold_3G00261350
rosa_rugosa Rorug07G0015700
rosa_samantha Rh7AG143000 Rh7BG143500 Rh7CG147300 Rh7DG144900
rosa_wichuraiana Rw7G012240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 757
AccI GTMKAC 1 cut(s) 216
AclWI GGATC 1 cut(s) 1086
AcsI RAATTY 1 cut(s) 574
AfaI GTAC 4 cut(s) 369, 719, 794, 1010
AfiI CCNNNNNNNGG 1 cut(s) 306
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 7 cut(s) 138, 421, 594, 673, 850, 929, 973
AjnI CCWGG 2 cut(s) 64, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
AluBI AGCT 5 cut(s) 434, 554, 880, 892, 983
AluI AGCT 5 cut(s) 434, 554, 880, 892, 983
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 1086
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 2 cut(s) 109, 1135
ApeKI GCWGC 3 cut(s) 358, 554, 768
ApoI RAATTY 1 cut(s) 574
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 773
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 5 cut(s) 114, 445, 481, 850, 1026
AvaI CYCGRG 1 cut(s) 353
BanI GGYRCC 1 cut(s) 757
BauI CACGAG 1 cut(s) 252
BbvI GCAGC 3 cut(s) 345, 541, 755
BccI CCATC 6 cut(s) 110, 800, 835, 931, 1095, 1118
BcgI CGANNNNNNTGC 4 cut(s) 536, 562, 570, 596
BciT130I CCWGG 2 cut(s) 66, 1115
BcoDI GTCTC 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 762
BglI GCCNNNNNGGC 1 cut(s) 1115
BisI GCNGC 3 cut(s) 359, 555, 769
BlsI GCNGC 3 cut(s) 360, 556, 770
Bme1390I CCNGG 2 cut(s) 66, 1115
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 112, 759
BmrFI CCNGG 2 cut(s) 66, 1115
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 4 cut(s) 437, 695, 976, 1087
BmuI ACTGGG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 884
BsaJI CCNNGG 2 cut(s) 238, 662
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 307, 456
BseBI CCWGG 2 cut(s) 66, 1115
BseDI CCNNGG 2 cut(s) 238, 662
BseGI GGATG 3 cut(s) 811, 1087, 1110
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 803
BseNI ACTGG 2 cut(s) 307, 456
BseRI GAGGAG 6 cut(s) 63, 165, 199, 765, 836, 890
BseXI GCAGC 3 cut(s) 345, 541, 755
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 1 cut(s) 1124
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 111, 1137
BshNI GGYRCC 1 cut(s) 757
BsiEI CGRYCG 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 353
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 36, 979
BsnI GGCC 2 cut(s) 111, 1137
BsoBI CYCGRG 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 717
Bsp143I GATC 3 cut(s) 6, 562, 1078
BspANI GGCC 2 cut(s) 111, 1137
BspCNI CTCAG 1 cut(s) 802
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 112, 759
BspPI GGATC 1 cut(s) 1086
BspQI GCTCTTC 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 757
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 307, 456
BssECI CCNNGG 2 cut(s) 238, 662
BssMI GATC 3 cut(s) 6, 562, 1078
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 66, 1115
Bst4CI ACNGT 6 cut(s) 52, 221, 275, 663, 813, 838
Bst6I CTCTTC 2 cut(s) 388, 882
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstAUI TGTACA 1 cut(s) 717
BstBAI YACGTR 1 cut(s) 884
BstC8I GCNNGC 6 cut(s) 548, 552, 756, 991, 1048, 1139
BstDEI CTNAG 1 cut(s) 789
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 3 cut(s) 811, 1087, 1110
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 3 cut(s) 9, 565, 1081
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 3 cut(s) 6, 562, 1078
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 502, 1106, 1115
BstNI CCWGG 2 cut(s) 66, 1115
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 64, 1113
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 3 cut(s) 345, 541, 755
BstXI CCANNNNNNTGG 2 cut(s) 302, 1168
BsuRI GGCC 2 cut(s) 111, 1137
BtgI CCRYGG 1 cut(s) 662
BtsCI GGATG 3 cut(s) 811, 1087, 1110
BtsIMutI CAGTG 4 cut(s) 300, 463, 585, 818
Cac8I GCNNGC 6 cut(s) 548, 552, 756, 991, 1048, 1139
CciI TCATGA 1 cut(s) 732
CfoI GCGC 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 4 cut(s) 368, 718, 793, 1009
CviAII CATG 5 cut(s) 479, 733, 965, 1024, 1162
CviQI GTAC 4 cut(s) 368, 718, 793, 1009
DdeI CTNAG 1 cut(s) 789
DpnI GATC 3 cut(s) 8, 564, 1080
DpnII GATC 3 cut(s) 6, 562, 1078
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 388, 882
EarI CTCTTC 2 cut(s) 388, 882
Eco130I CCWWGG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 2 cut(s) 64, 1113
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 5 cut(s) 482, 736, 968, 1027, 1165
FaqI GGGAC 1 cut(s) 167
FatI CATG 5 cut(s) 478, 732, 964, 1023, 1161
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 359, 555, 769
FokI GGATG 3 cut(s) 818, 1074, 1097
Fsp4HI GCNGC 3 cut(s) 359, 555, 769
GlaI GCGC 1 cut(s) 772
GluI GCNGC 3 cut(s) 359, 555, 769
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 2 cut(s) 111, 1137
HhaI GCGC 1 cut(s) 773
Hin1II CATG 5 cut(s) 482, 736, 968, 1027, 1165
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HincII GTYRAC 2 cut(s) 217, 476
HindII GTYRAC 2 cut(s) 217, 476
HinfI GANTC 8 cut(s) 172, 206, 324, 409, 444, 600, 899, 1190
HphI GGTGA 5 cut(s) 114, 445, 481, 850, 1026
Hpy166II GTNNAC 3 cut(s) 217, 476, 510
Hpy188I TCNGA 2 cut(s) 466, 958
Hpy188III TCNNGA 5 cut(s) 86, 278, 571, 733, 896
Hpy8I GTNNAC 3 cut(s) 217, 476, 510
HpyAV CCTTC 8 cut(s) 129, 135, 275, 395, 496, 730, 796, 923
HpyCH4III ACNGT 6 cut(s) 52, 221, 275, 663, 813, 838
HpyCH4IV ACGT 2 cut(s) 642, 883
HpyCH4V TGCA 7 cut(s) 36, 344, 428, 646, 1050, 1100, 1141
HpyF10VI GCNNNNNNNGC 3 cut(s) 502, 1106, 1115
HpyF3I CTNAG 1 cut(s) 789
HpySE526I ACGT 2 cut(s) 642, 883
Hsp92II CATG 5 cut(s) 482, 736, 968, 1027, 1165
HspAI GCGC 1 cut(s) 771
Kzo9I GATC 3 cut(s) 6, 562, 1078
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 2 cut(s) 778, 877
Lsp1109I GCAGC 3 cut(s) 345, 541, 755
LweI GCATC 4 cut(s) 437, 695, 976, 1087
MaeII ACGT 2 cut(s) 642, 883
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 8, 564, 1080
MboI GATC 3 cut(s) 6, 562, 1078
MboII GAAGA 8 cut(s) 5, 8, 120, 123, 126, 405, 899, 904
MfeI CAATTG 1 cut(s) 594
MluCI AATT 7 cut(s) 232, 421, 467, 574, 594, 705, 1082
MlyI GAGTC 3 cut(s) 166, 200, 1184
MmeI TCCRAC 3 cut(s) 170, 927, 1115
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 2 cut(s) 536, 708
MslI CAYNNNNRTG 3 cut(s) 737, 839, 1148
MspA1I CMGCKG 2 cut(s) 434, 983
MspR9I CCNGG 2 cut(s) 66, 1115
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 36, 979
MvaI CCWGG 2 cut(s) 66, 1115
MwoI GCNNNNNNNGC 3 cut(s) 502, 1106, 1115
NdeII GATC 3 cut(s) 6, 562, 1078
NlaIII CATG 5 cut(s) 482, 736, 968, 1027, 1165
NlaIV GGNNCC 2 cut(s) 112, 759
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 482
PagI TCATGA 1 cut(s) 732
PciI ACATGT 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 882
PctI GAATGC 2 cut(s) 36, 979
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 5 cut(s) 324, 409, 444, 600, 899
PkrI GCNGC 3 cut(s) 360, 556, 770
PleI GAGTC 3 cut(s) 166, 200, 1184
PpsI GAGTC 3 cut(s) 166, 200, 1184
Ppu21I YACGTR 1 cut(s) 884
PscI ACATGT 1 cut(s) 478
Psp6I CCWGG 2 cut(s) 64, 1113
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 2 cut(s) 64, 1113
PspN4I GGNNCC 2 cut(s) 112, 759
PspPI GGNCC 1 cut(s) 110
PvuII CAGCTG 2 cut(s) 434, 983
RsaI GTAC 4 cut(s) 369, 719, 794, 1010
RsaNI GTAC 4 cut(s) 368, 718, 793, 1009
RseI CAYNNNNRTG 3 cut(s) 737, 839, 1148
SalI GTCGAC 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 536, 708
SatI GCNGC 3 cut(s) 359, 555, 769
Sau3AI GATC 3 cut(s) 6, 562, 1078
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 3 cut(s) 166, 200, 1184
ScrFI CCNGG 2 cut(s) 66, 1115
SfaNI GCATC 4 cut(s) 437, 695, 976, 1087
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 3 cut(s) 737, 839, 1148
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 7 cut(s) 232, 421, 467, 574, 594, 705, 1082
StyD4I CCNGG 2 cut(s) 64, 1113
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 6 cut(s) 52, 221, 275, 663, 813, 838
TaiI ACGT 2 cut(s) 645, 886
TaqI TCGA 5 cut(s) 216, 277, 285, 572, 935
TasI AATT 7 cut(s) 232, 421, 467, 574, 594, 705, 1082
TatI WGTACW 3 cut(s) 717, 792, 1008
TfiI GAWTC 5 cut(s) 324, 409, 444, 600, 899
Tru1I TTAA 2 cut(s) 536, 708
Tru9I TTAA 2 cut(s) 536, 708
TscAI CASTG 4 cut(s) 307, 463, 585, 818
TseI GCWGC 3 cut(s) 358, 554, 768
TspDTI ATGAA 3 cut(s) 749, 815, 1178
TspRI CASTG 4 cut(s) 307, 463, 585, 818
XapI RAATTY 1 cut(s) 574
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 891
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.