Prupe.5G168900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
14517757 .. 14520946
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G168900.2

Sequence Viewer

Length: 1554 bp
ATGGAGCTGACGCCACTGCTTGTGGTGGCTCCGTCGGAGGTCACCACTGCCGCACGCTTCTACCGGCAAGTTTTTGGTGCTAAGATCGTGAGCAATGATCCAGAGATGGCTGAGATACTGATAGGTTCAGATCTCCTTATCATCACTTGTCCGGCCCGCTCCCGGACAGACCTATCGCCTCCGATGCTGTGTCTCCGGCTTCGGTGCTCCGATCCGGAACAGTTCGCTAAGAAGATTCTGAACACTGAGCAATTTACACCGATGGCCGAGCATTGTGAATGGAATGTTAAAGATGAGCATGGAATTTTCTGGCAATTCACCAATAACTGTGAAAGGCCGGTTCTGGAGGCAGGGCCCAATGTTGACCATCTGGACTCTGAAATTAAAGTGATTAGCATGATACCCAAAGTTTTTGTGCCAGCAAACCAGGCTACGAACGCGACCAACTGTTATTGTAATTACTTCGGAGGAAAGACTTTGCACTACAACAGCATTCCGCGGCAAGAGGACGAGGAGGACCTTATTCATTGTTATCGAATCACACTTGGTTCAAGTGATTTATTAATAACTGACGATGACATGCTTATGAATACTTGTCTTCAGTTGAATTTACACAACTCCACTGACATCAGAGCAGCAAGGGATTTTGCAAAGACGAATGGATGTAACGTGTTGAGAGATGTTGGCGAGGACCCCCTGCGTCCGGGTGTGCTGGTGGCCACCGTCACCGACCCTTTCAAGTTTGTTTGGCAACTCAGTAATTCCGCGGGTGGTCTAGGGCCATATGAAGATGGTTTTCTTTGCTTCCGGTGTGTTCGTATTGTAGTTATAGGTGGTGGCAATGCAGAAATGTTCGATATCCCCGGGACTCCGACTGTTATTCCTGAAGATATATCAAGACATGAATTTTTCAAGCGGTTTTGGAAAGGATGCCGGGAAGACGTGGTTGTAGTAGTGGGCTATGAGTTGAGCAAGGAAATTGTCTCTTATCTCAGGGACAATATTGGATTTCGAGGTATGATTGTTGGGTTAGTCAGTGGCTCTGTAGACATTGACCAGGAGGAACAGATGATGTTGATGTGTCAGTATGGATGTGACACAAGTCTGGGCATACCACTGACTCAAAGAGCAATTAGAAATCTCGTTATTGCTTATCTGGAGAAGGAGGAGGAGGAGAAAGCAAAGGCTGCTGCTGGTTCTTCTACGCGTAAGGTGGAAAGCACTGAAAGGACAAATGCCAAAAGATTGCTAAGTGAGCTGAGAACTGAGAAGGAAGAGGCATTGAAAAGGAAGATTGATGAGGAGAAAAAGGAGGAGGCACTGGAGAAGAAGGTGACAAAAACAGAGCAAGAACAAGAAGCCGAGGCACCAAAGGAGAAAAACGAGAAGAAGAAGGAAGAAGAAGAGGACAAAGAGAAGGTAGAAGAGGAGGCACTGAGGCAACAAAGGAAAAAGAGGAGGACGAAGAAGCAGAGGCAGCAAAGGAGAAAGATAAGTGTTGGTCCTTTTTTCCGTCCGCCGTTCCTTTTTGCGGTCCGCGGGGGTCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

518

Amino Acids

58.78

Weight (kDa)

5.62

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1366
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 1047
AccII CGCG 5 cut(s) 440, 499, 767, 1207, 1539
AccIII TCCGGA 1 cut(s) 214
AclWI GGATC 2 cut(s) 92, 206
AcoI YGGCCR 2 cut(s) 264, 717
AcsI RAATTY 3 cut(s) 303, 607, 905
AcuI CTGAAG 2 cut(s) 584, 906
AcyI GRCGYC 1 cut(s) 11
AfiI CCNNNNNNNGG 3 cut(s) 162, 703, 1531
AflIII ACRYGT 2 cut(s) 669, 1205
AgsI TTSAA 5 cut(s) 552, 607, 739, 913, 1285
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 2 cut(s) 426, 1056
AluBI AGCT 2 cut(s) 7, 1258
AluI AGCT 2 cut(s) 7, 1258
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 197, 988
AlwI GGATC 2 cut(s) 92, 206
Ama87I CYCGRG 1 cut(s) 863
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 6 cut(s) 153, 264, 335, 353, 717, 779
ApaI GGGCCC 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 635, 1187, 1190, 1477
ApoI RAATTY 3 cut(s) 303, 607, 905
AseI ATTAAT 1 cut(s) 563
AspS9I GGNCC 8 cut(s) 154, 353, 354, 517, 691, 779, 1502, 1534
AsuC2I CCSGG 5 cut(s) 163, 705, 864, 865, 935
AsuHPI GGTGA 4 cut(s) 34, 310, 718, 1345
AvaI CYCGRG 1 cut(s) 863
AvaII GGWCC 4 cut(s) 517, 691, 1502, 1534
BaeGI GKGCMC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 719
BanI GGYRCC 1 cut(s) 1366
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 2 cut(s) 590, 945
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 4 cut(s) 647, 1174, 1177, 1489
BccI CCATC 4 cut(s) 100, 256, 375, 785
BceAI ACGGC 1 cut(s) 1504
BciT130I CCWGG 2 cut(s) 428, 1058
BcnI CCSGG 5 cut(s) 163, 705, 864, 865, 935
BcoDI GTCTC 2 cut(s) 197, 988
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 1 cut(s) 1044
BglII AGATCT 1 cut(s) 130
BisI GCNGC 6 cut(s) 51, 500, 636, 1188, 1191, 1478
BlsI GCNGC 6 cut(s) 52, 501, 637, 1189, 1192, 1479
Bme1390I CCNGG 7 cut(s) 163, 428, 705, 864, 865, 935, 1058
Bme18I GGWCC 4 cut(s) 517, 691, 1502, 1534
BmeT110I CYCGRG 1 cut(s) 863
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 8 cut(s) 154, 353, 354, 517, 691, 779, 1502, 1534
BmiI GGNNCC 4 cut(s) 30, 355, 693, 1368
BmrFI CCNGG 7 cut(s) 163, 428, 705, 864, 865, 935, 1058
BmsI GCATC 2 cut(s) 174, 920
BoxI GACNNNNGTC 1 cut(s) 1101
BpiI GAAGAC 2 cut(s) 590, 945
BpmI CTGGAG 3 cut(s) 365, 1178, 1343
BpuMI CCSGG 5 cut(s) 163, 705, 864, 865, 935
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 6 cut(s) 497, 765, 862, 863, 1362, 1537
BsaWI WCCGGW 2 cut(s) 214, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 703, 1531
Bse118I RCCGGY 2 cut(s) 63, 337
Bse1I ACTGG 1 cut(s) 1326
Bse3DI GCAATG 2 cut(s) 100, 847
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 2 cut(s) 428, 1058
BseDI CCNNGG 6 cut(s) 497, 765, 862, 863, 1362, 1537
BseGI GGATG 3 cut(s) 668, 935, 1097
BseLI CCNNNNNNNGG 3 cut(s) 162, 703, 1531
BseMI GCAATG 2 cut(s) 100, 847
BseMII CTCAG 7 cut(s) 102, 237, 769, 1006, 1250, 1257, 1427
BseNI ACTGG 1 cut(s) 1326
BseRI GAGGAG 8 cut(s) 527, 1181, 1184, 1187, 1316, 1328, 1442, 1471
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 4 cut(s) 647, 1174, 1177, 1489
Bsh1236I CGCG 5 cut(s) 440, 499, 767, 1207, 1539
BshFI GGCC 6 cut(s) 155, 266, 337, 355, 719, 781
BshNI GGYRCC 1 cut(s) 1366
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 863
BslFI GGGAC 2 cut(s) 880, 1010
BslI CCNNNNNNNGG 3 cut(s) 162, 703, 1531
BsmAI GTCTC 2 cut(s) 197, 988
BsmFI GGGAC 2 cut(s) 880, 1010
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 6 cut(s) 155, 266, 337, 355, 719, 781
BsoBI CYCGRG 1 cut(s) 863
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 209, 357
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 4 cut(s) 84, 97, 130, 211
BspANI GGCC 6 cut(s) 155, 266, 337, 355, 719, 781
BspCNI CTCAG 7 cut(s) 103, 238, 768, 1005, 1251, 1258, 1428
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 5 cut(s) 440, 499, 767, 1207, 1539
BspLI GGNNCC 4 cut(s) 30, 355, 693, 1368
BspPI GGATC 2 cut(s) 92, 206
BspT107I GGYRCC 1 cut(s) 1366
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 100, 847
BsrFI RCCGGY 2 cut(s) 63, 337
BsrI ACTGG 1 cut(s) 1326
BssAI RCCGGY 2 cut(s) 63, 337
BssECI CCNNGG 6 cut(s) 497, 765, 862, 863, 1362, 1537
BssMI GATC 4 cut(s) 84, 97, 130, 211
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 428, 1058
Bst4CI ACNGT 5 cut(s) 222, 329, 449, 724, 877
Bst6I CTCTTC 3 cut(s) 1269, 1398, 1419
BstACI GRCGYC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstC8I GCNNGC 3 cut(s) 55, 157, 420
BstDSI CCRYGG 3 cut(s) 497, 765, 1537
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 3 cut(s) 668, 935, 1097
BstFNI CGCG 5 cut(s) 440, 499, 767, 1207, 1539
BstKTI GATC 4 cut(s) 87, 100, 133, 214
BstMAI GTCTC 2 cut(s) 197, 988
BstMBI GATC 4 cut(s) 84, 97, 130, 211
BstMWI GCNNNNNNNGC 6 cut(s) 184, 428, 437, 1187, 1255, 1477
BstNI CCWGG 2 cut(s) 428, 1058
BstNSI RCATGY 1 cut(s) 583
BstPAI GACNNNNGTC 1 cut(s) 1101
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 7 cut(s) 161, 426, 703, 862, 863, 933, 1056
BstSFI CTRYAG 1 cut(s) 1044
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 5 cut(s) 440, 499, 767, 1207, 1539
BstV1I GCAGC 4 cut(s) 647, 1174, 1177, 1489
BstV2I GAAGAC 2 cut(s) 590, 945
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 6 cut(s) 155, 266, 337, 355, 719, 781
BtgI CCRYGG 3 cut(s) 497, 765, 1537
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 3 cut(s) 668, 935, 1097
BtsI GCAGTG 2 cut(s) 14, 45
BtsIMutI CAGTG 9 cut(s) 14, 45, 243, 621, 1042, 1115, 1221, 1319, 1433
Cac8I GCNNGC 3 cut(s) 55, 157, 420
Cfr10I RCCGGY 2 cut(s) 63, 337
Cfr13I GGNCC 8 cut(s) 154, 353, 354, 517, 691, 779, 1502, 1534
Cfr42I CCGCGG 3 cut(s) 500, 768, 1540
Cfr9I CCCGGG 1 cut(s) 863
CpoI CGGWCCG 1 cut(s) 1534
CseI GACGC 2 cut(s) 19, 689
CspI CGGWCCG 1 cut(s) 1534
CviAII CATG 4 cut(s) 299, 397, 580, 902
DpnI GATC 4 cut(s) 86, 99, 132, 213
DpnII GATC 4 cut(s) 84, 97, 130, 211
EaeI YGGCCR 2 cut(s) 264, 717
Eam1104I CTCTTC 3 cut(s) 1269, 1398, 1419
EarI CTCTTC 3 cut(s) 1269, 1398, 1419
EciI GGCGGA 1 cut(s) 1506
Eco24I GRGCYC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 4 cut(s) 517, 691, 1502, 1534
Eco57I CTGAAG 2 cut(s) 584, 906
Eco88I CYCGRG 1 cut(s) 863
Eco91I GGTNACC 1 cut(s) 40
EcoO109I RGGNCCY 3 cut(s) 353, 517, 691
EcoO65I GGTNACC 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 426, 1056
EcoRV GATATC 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 357
FaeI CATG 4 cut(s) 302, 400, 583, 905
FaqI GGGAC 2 cut(s) 880, 1010
FatI CATG 4 cut(s) 298, 396, 579, 901
FauI CCCGC 3 cut(s) 164, 760, 1532
FauNDI CATATG 1 cut(s) 784
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 6 cut(s) 51, 500, 636, 1188, 1191, 1478
FokI GGATG 3 cut(s) 675, 942, 1104
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 6 cut(s) 51, 500, 636, 1188, 1191, 1478
FspBI CTAG 1 cut(s) 776
GluI GCNGC 6 cut(s) 51, 500, 636, 1188, 1191, 1478
GsuI CTGGAG 3 cut(s) 365, 1178, 1343
HaeIII GGCC 6 cut(s) 155, 266, 337, 355, 719, 781
HgaI GACGC 2 cut(s) 19, 689
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 4 cut(s) 302, 400, 583, 905
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 5 cut(s) 235, 374, 537, 868, 1120
HphI GGTGA 4 cut(s) 34, 310, 718, 1345
Hpy166II GTNNAC 2 cut(s) 364, 1048
Hpy188III TCNNGA 8 cut(s) 88, 101, 215, 344, 371, 884, 897, 1157
Hpy8I GTNNAC 2 cut(s) 364, 1048
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 5 cut(s) 1156, 1264, 1324, 1387, 1411
HpyCH4III ACNGT 5 cut(s) 222, 329, 449, 724, 877
HpyCH4IV ACGT 2 cut(s) 669, 942
HpyCH4V TGCA 3 cut(s) 481, 650, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 428, 437, 1187, 1255, 1477
HpySE526I ACGT 2 cut(s) 669, 942
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 4 cut(s) 302, 400, 583, 905
Kpn2I TCCGGA 1 cut(s) 214
KspI CCGCGG 3 cut(s) 500, 768, 1540
Kzo9I GATC 4 cut(s) 84, 97, 130, 211
LmnI GCTCC 4 cut(s) 4, 34, 164, 212
Lsp1109I GCAGC 4 cut(s) 647, 1174, 1177, 1489
LweI GCATC 2 cut(s) 174, 920
MaeI CTAG 1 cut(s) 776
MaeII ACGT 2 cut(s) 669, 942
MaeIII GTNAC 5 cut(s) 40, 665, 724, 1094, 1333
MalI GATC 4 cut(s) 86, 99, 132, 213
MbiI CCGCTC 1 cut(s) 159
MboI GATC 4 cut(s) 84, 97, 130, 211
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 209, 357
MlsI TGGCCA 1 cut(s) 719
MluI ACGCGT 1 cut(s) 1205
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 3 cut(s) 368, 862, 1114
MmeI TCCRAC 2 cut(s) 15, 896
Mox20I TGGCCA 1 cut(s) 719
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 719
MseI TTAA 3 cut(s) 288, 384, 563
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 719
MspA1I CMGCKG 3 cut(s) 499, 767, 1539
MspR9I CCNGG 7 cut(s) 163, 428, 705, 864, 865, 935, 1058
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 2 cut(s) 428, 1058
MvnI CGCG 5 cut(s) 440, 499, 767, 1207, 1539
MwoI GCNNNNNNNGC 6 cut(s) 184, 428, 437, 1187, 1255, 1477
NciI CCSGG 5 cut(s) 163, 705, 864, 865, 935
NdeI CATATG 1 cut(s) 784
NdeII GATC 4 cut(s) 84, 97, 130, 211
NlaIII CATG 4 cut(s) 302, 400, 583, 905
NlaIV GGNNCC 4 cut(s) 30, 355, 693, 1368
NmeAIII GCCGAG 2 cut(s) 292, 1387
NmuCI GTSAC 4 cut(s) 40, 724, 1094, 1333
NspI RCATGY 1 cut(s) 583
PctI GAATGC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 235, 537
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 6 cut(s) 52, 501, 637, 1189, 1192, 1479
PleI GAGTC 3 cut(s) 368, 862, 1114
PpsI GAGTC 3 cut(s) 368, 862, 1114
PpuMI RGGWCCY 2 cut(s) 517, 691
PshAI GACNNNNGTC 1 cut(s) 1101
PshBI ATTAAT 1 cut(s) 563
Psp5II RGGWCCY 2 cut(s) 517, 691
Psp6I CCWGG 2 cut(s) 426, 1056
PspEI GGTNACC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 426, 1056
PspN4I GGNNCC 4 cut(s) 30, 355, 693, 1368
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 8 cut(s) 154, 353, 354, 517, 691, 779, 1502, 1534
PspPPI RGGWCCY 2 cut(s) 517, 691
PsuI RGATCY 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 584
Rsr2I CGGWCCG 1 cut(s) 1534
RsrII CGGWCCG 1 cut(s) 1534
SacII CCGCGG 3 cut(s) 500, 768, 1540
SaqAI TTAA 3 cut(s) 288, 384, 563
SatI GCNGC 6 cut(s) 51, 500, 636, 1188, 1191, 1478
Sau3AI GATC 4 cut(s) 84, 97, 130, 211
Sau96I GGNCC 8 cut(s) 154, 353, 354, 517, 691, 779, 1502, 1534
SchI GAGTC 3 cut(s) 368, 862, 1114
ScrFI CCNGG 7 cut(s) 163, 428, 705, 864, 865, 935, 1058
SduI GDGCHC 2 cut(s) 209, 357
SfaNI GCATC 2 cut(s) 174, 920
SfcI CTRYAG 1 cut(s) 1044
Sfr303I CCGCGG 3 cut(s) 500, 768, 1540
SgrBI CCGCGG 3 cut(s) 500, 768, 1540
SinI GGWCC 4 cut(s) 517, 691, 1502, 1534
SmaI CCCGGG 1 cut(s) 865
SmiMI CAYNNNNRTG 1 cut(s) 584
SspI AATATT 1 cut(s) 1003
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 7 cut(s) 161, 426, 703, 862, 863, 933, 1056
TaaI ACNGT 5 cut(s) 222, 329, 449, 724, 877
TaiI ACGT 2 cut(s) 672, 945
TaqI TCGA 3 cut(s) 535, 855, 1012
TauI GCSGC 2 cut(s) 53, 502
TfiI GAWTC 2 cut(s) 235, 537
Tru1I TTAA 3 cut(s) 288, 384, 563
Tru9I TTAA 3 cut(s) 288, 384, 563
TscAI CASTG 9 cut(s) 21, 52, 250, 628, 1042, 1122, 1228, 1326, 1440
TseFI GTSAC 4 cut(s) 40, 724, 1094, 1333
TseI GCWGC 4 cut(s) 635, 1187, 1190, 1477
Tsp45I GTSAC 4 cut(s) 40, 724, 1094, 1333
TspDTI ATGAA 4 cut(s) 515, 602, 801, 918
TspGWI ACGGA 2 cut(s) 21, 1502
TspMI CCCGGG 1 cut(s) 863
TspRI CASTG 9 cut(s) 21, 52, 250, 628, 1042, 1122, 1228, 1326, 1440
VpaK11BI GGWCC 4 cut(s) 517, 691, 1502, 1534
VspI ATTAAT 1 cut(s) 563
XapI RAATTY 3 cut(s) 303, 607, 905
XceI RCATGY 1 cut(s) 583
XmaI CCCGGG 1 cut(s) 863
XmiI GTMKAC 1 cut(s) 1047
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.