Rroxscaffold_4G00314480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014792
Physical Location & Seq
Forward (+)
38485437 .. 38490532
5096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314480.1

Sequence Viewer

Length: 345 bp
ATGGAAGATGAATGGAAAATTACTGAGGCCATGCCACAGCTCATGGTGGCTTCAGAAAAAGCATTTGAAGCTGCAGGTTTCTATGAACTCTTATTTGGAGCACAGAGAACTCGATACAATGAGTTTCCCATGCAGAGTCGAACTTCTGACAGGTACTGCCGGGTTGCATGTGTGGAGCTCACAATAGGTTCCAGCCCTCTTGTGGTGAGGGATTTTGACAGTATAAACAGTCGGGTTGTGAGAGATGTAAATTCATGGGTTTCCACTTGCCTCCGCCTTCAATGCTTGAACCTGGACCTTATGATGGCAAGGGCTGTCAGTATGGGCTGCACAGTTCTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.0

Weight (kDa)

5.42

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g48480-like_N PF22656 13 - 71 1.2e-06 Glyoxalase At5g48480-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 65
AciI CCGC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 202, 304
AgsI TTSAA 3 cut(s) 68, 281, 289
AjnI CCWGG 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 3 cut(s) 40, 71, 178
AluI AGCT 3 cut(s) 40, 71, 178
Alw21I GWGCWC 2 cut(s) 103, 180
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 71, 327
ApoI RAATTY 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 103, 180
BbvI GCAGC 2 cut(s) 58, 314
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 2 cut(s) 72, 328
BlsI GCNGC 2 cut(s) 73, 329
Bme1390I CCNGG 2 cut(s) 161, 293
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 161, 293
BpuMI CCSGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 304
BseBI CCWGG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 202, 304
BseMII CTCAG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 58, 314
BsgI GTGCAG 1 cut(s) 313
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 103, 180
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 202, 304
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 103, 180
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 3 cut(s) 221, 230, 334
BstDEI CTNAG 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 68, 282
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 159, 291
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 58, 314
BsuRI GGCC 1 cut(s) 29
BveI ACCTGC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 154
CviAII CATG 5 cut(s) 31, 43, 130, 168, 255
CviJI RGCY 8 cut(s) 29, 40, 50, 71, 178, 195, 314, 327
CviKI_1 RGCY 8 cut(s) 29, 40, 50, 71, 178, 195, 314, 327
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 24
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 5 cut(s) 34, 46, 133, 171, 258
FaiI YATR 9 cut(s) 32, 44, 84, 131, 169, 224, 256, 302, 323
FatI CATG 5 cut(s) 30, 42, 129, 167, 254
Fnu4HI GCNGC 2 cut(s) 72, 328
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 72, 328
GluI GCNGC 2 cut(s) 72, 328
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 160
Hin1II CATG 5 cut(s) 34, 46, 133, 171, 258
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 55, 148
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 3 cut(s) 221, 230, 334
HpyCH4V TGCA 4 cut(s) 74, 133, 167, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 282
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 5 cut(s) 34, 46, 133, 171, 258
LmnI GCTCC 2 cut(s) 98, 175
LpnPI CCDG 6 cut(s) 60, 136, 173, 205, 278, 305
Lsp1109I GCAGC 2 cut(s) 58, 314
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 103, 180
MluCI AATT 2 cut(s) 18, 250
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 4 cut(s) 19, 201, 207, 281
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 161, 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 68, 282
NciI CCSGG 1 cut(s) 161
NlaIII CATG 5 cut(s) 34, 46, 133, 171, 258
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 171
PkrI GCNGC 2 cut(s) 73, 329
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 156
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 180
SatI GCNGC 2 cut(s) 72, 328
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 161, 293
SduI GDGCHC 2 cut(s) 103, 180
SetI ASST 8 cut(s) 42, 73, 79, 155, 180, 190, 294, 300
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 295
Sse9I AATT 2 cut(s) 18, 250
SsiI CCGC 1 cut(s) 274
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 159, 291
TaaI ACNGT 3 cut(s) 221, 230, 334
TaqI TCGA 2 cut(s) 112, 139
TasI AATT 2 cut(s) 18, 250
TseI GCWGC 2 cut(s) 71, 327
TspDTI ATGAA 3 cut(s) 24, 99, 243
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.