Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014792

Physical Location & Seq

Genomic Coordinates Reverse (-)

33255089 .. 33258617

Gene Structure 3529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG161400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGAAGATGAATGGAAAATTACTGAGGCCATGCCACAGCTCATGGTACTGCCGGGTTGCATGTGTGGAGCTCACAATAGGTTCCAGCCCTCTTGTGGTGAGGGATTTTGACAGTATAAACAGTCGGGTTGTGAGAGATGTAAATTCATGGGTTTCCACTTGCCTCCACCTTCAATGCTTGAACCTGGACCTTATGATGGCAAGGGCTGTCAGTATGGGCTGCACGGTTCTTAAAGAAATTTTGGAGGATCCAGTTCATCCTGGTGTGATGGTCGGCATTGTAAGAGATCCATTTGGCCATGTATGGGAGCTCAGCGCCTCATCTTATGGTGTCTCAGAAGAGGGTTTCATGAACACTGAGTGCATGAACGTGTTGCTTCAAGGTTGGAGCAAGAGTAAGAGGGAGGAGAACAAAGGGCTGTTTGAAACCTATGATTTCACACCAATGGTTGGGTCCTGTGAGACAAAGAAGAATGCAGCACATATAGTCAGTACGTGCAGACATCAAGGTCCCTTATTTGACCCCATTCTTTTTTATTGCAAATACATGGCAAGGAGTGTTCTAGTATCAGCTGCAGCAGTTCATATCAAATTTATATATGCTTTGCAAGGCTTGCTCACTATCAAGCTTGGTGGTGGCCATTTCTTTAAGTGGATGAGTCAAGGGCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

225

Amino Acids

25.08

Weight (kDa)

8.32

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014792)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07350 FvH4_7g07350 FvH4_7g07350 FvH4_7g07350
prunus_persica	Prupe.1G284200_v2.0.a1 Prupe.5G168900_v2.0.a1 Prupe.5G168900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0337361
rosa_laevigata	RLG00000029282
rosa_multiflora	Rmu_co8522047.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314480
rosa_rugosa	Rorug01G0134700.1
rosa_samantha	Rh1AG153700 Rh1BG123000 Rh1CG144700 Rh1DG161400
rosa_wichuraiana	Rw1G012590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	510
AccB7I	CCANNNNNTGG	1 cut(s)	452
AclWI	GGATC	3 cut(s)	245, 258, 284
AcoI	YGGCCR	2 cut(s)	298, 640
AcsI	RAATTY	3 cut(s)	145, 240, 593
AdeI	CACNNNGTG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	50, 496
AfiI	CCNNNNNNNGG	4 cut(s)	97, 199, 307, 452
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	176, 184, 383, 428
AjnI	CCWGG	2 cut(s)	186, 262
AluBI	AGCT	5 cut(s)	42, 73, 313, 575, 631
AluI	AGCT	5 cut(s)	42, 73, 313, 575, 631
Alw21I	GWGCWC	2 cut(s)	75, 315
Alw26I	GTCTC	2 cut(s)	340, 458
AlwI	GGATC	3 cut(s)	245, 258, 284
AoxI	GGCC	3 cut(s)	29, 298, 640
ApeKI	GCWGC	4 cut(s)	222, 479, 575, 578
ApoI	RAATTY	3 cut(s)	145, 240, 593
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	3 cut(s)	190, 456, 512
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	3 cut(s)	190, 456, 512
BalI	TGGCCA	2 cut(s)	300, 642
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	2 cut(s)	75, 315
Bbv12I	GWGCWC	2 cut(s)	75, 315
BbvI	GCAGC	4 cut(s)	209, 491, 562, 590
BccI	CCATC	2 cut(s)	193, 265
BciT130I	CCWGG	2 cut(s)	188, 264
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	340, 458
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	4 cut(s)	223, 480, 576, 579
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	4 cut(s)	224, 481, 577, 580
Bme1390I	CCNGG	3 cut(s)	56, 188, 264
Bme18I	GGWCC	3 cut(s)	190, 456, 512
BmgT120I	GGNCC	3 cut(s)	190, 456, 512
BmiI	GGNNCC	4 cut(s)	85, 252, 457, 514
BmrFI	CCNGG	3 cut(s)	56, 188, 264
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 199, 307, 452
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	188, 264
BseGI	GGATG	2 cut(s)	259, 663
BseLI	CCNNNNNNNGG	4 cut(s)	97, 199, 307, 452
BseMII	CTCAG	4 cut(s)	17, 328, 351, 351
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	209, 491, 562, 590
BsgI	GTGCAG	2 cut(s)	208, 520
BshFI	GGCC	3 cut(s)	31, 300, 642
BsiHKAI	GWGCWC	2 cut(s)	75, 315
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	97, 199, 307, 452
BsmAI	GTCTC	2 cut(s)	340, 458
BsmFI	GGGAC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	31, 300, 642
Bsp1286I	GDGCHC	2 cut(s)	75, 315
Bsp143I	GATC	2 cut(s)	250, 289
Bsp1720I	GCTNAGC	1 cut(s)	314
BspANI	GGCC	3 cut(s)	31, 300, 642
BspCNI	CTCAG	4 cut(s)	18, 327, 350, 352
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	4 cut(s)	85, 252, 457, 514
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	3 cut(s)	245, 258, 284
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	250, 289
Bst2UI	CCWGG	2 cut(s)	188, 264
Bst4CI	ACNGT	3 cut(s)	116, 125, 229
Bst6I	CTCTTC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	4 cut(s)	26, 314, 337, 360
BstF5I	GGATG	2 cut(s)	259, 663
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	2 cut(s)	253, 292
BstMAI	GTCTC	2 cut(s)	340, 458
BstMBI	GATC	2 cut(s)	250, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	616
BstNI	CCWGG	2 cut(s)	188, 264
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	3 cut(s)	54, 186, 262
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	4 cut(s)	209, 491, 562, 590
BstX2I	RGATCY	2 cut(s)	250, 289
BstYI	RGATCY	2 cut(s)	250, 289
BsuRI	GGCC	3 cut(s)	31, 300, 642
BtsCI	GGATG	2 cut(s)	259, 663
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	617
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	190, 456, 512
Csp6I	GTAC	2 cut(s)	49, 495
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	8 cut(s)	33, 45, 63, 150, 302, 352, 367, 550
CviQI	GTAC	2 cut(s)	49, 495
DdeI	CTNAG	4 cut(s)	26, 314, 337, 360
DpnI	GATC	2 cut(s)	252, 291
DpnII	GATC	2 cut(s)	250, 289
DraIII	CACNNNGTG	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	510
DseDI	GACNNNNNNGTC	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	298, 640
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Ecl136II	GAGCTC	2 cut(s)	73, 313
Eco24I	GRGCYC	2 cut(s)	75, 315
Eco47I	GGWCC	3 cut(s)	190, 456, 512
Eco53kI	GAGCTC	2 cut(s)	73, 313
EcoICRI	GAGCTC	2 cut(s)	73, 313
EcoO109I	RGGNCCY	2 cut(s)	456, 512
EcoRII	CCWGG	2 cut(s)	186, 262
EcoT38I	GRGCYC	2 cut(s)	75, 315
FaeI	CATG	8 cut(s)	36, 48, 66, 153, 305, 355, 370, 553
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	8 cut(s)	32, 44, 62, 149, 301, 351, 366, 549
Fnu4HI	GCNGC	4 cut(s)	223, 480, 576, 579
FokI	GGATG	2 cut(s)	246, 670
FriOI	GRGCYC	2 cut(s)	75, 315
Fsp4HI	GCNGC	4 cut(s)	223, 480, 576, 579
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	4 cut(s)	223, 480, 576, 579
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	31, 300, 642
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	8 cut(s)	36, 48, 66, 153, 305, 355, 370, 553
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	1 cut(s)	661
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	3 cut(s)	116, 125, 229
HpyCH4IV	ACGT	2 cut(s)	372, 497
HpyCH4V	TGCA	8 cut(s)	62, 225, 366, 479, 501, 543, 578, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	616
HpyF3I	CTNAG	4 cut(s)	26, 314, 337, 360
HpySE526I	ACGT	2 cut(s)	372, 497
Hsp92II	CATG	8 cut(s)	36, 48, 66, 153, 305, 355, 370, 553
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	250, 289
LmnI	GCTCC	3 cut(s)	70, 310, 390
LpnPI	CCDG	8 cut(s)	68, 100, 173, 200, 249, 267, 276, 472
Lsp1109I	GCAGC	4 cut(s)	209, 491, 562, 590
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	372, 497
MalI	GATC	2 cut(s)	252, 291
MboI	GATC	2 cut(s)	250, 289
MboII	GAAGA	3 cut(s)	19, 353, 484
MflI	RGATCY	2 cut(s)	250, 289
MhlI	GDGCHC	2 cut(s)	75, 315
MlsI	TGGCCA	2 cut(s)	300, 642
MluCI	AATT	4 cut(s)	20, 145, 240, 593
MluNI	TGGCCA	2 cut(s)	300, 642
MlyI	GAGTC	1 cut(s)	670
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	9 cut(s)	21, 96, 102, 176, 241, 331, 337, 396, 400
Mox20I	TGGCCA	2 cut(s)	300, 642
MscI	TGGCCA	2 cut(s)	300, 642
MseI	TTAA	2 cut(s)	234, 651
MslI	CAYNNNNRTG	3 cut(s)	264, 371, 446
Msp20I	TGGCCA	2 cut(s)	300, 642
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	3 cut(s)	56, 188, 264
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	188, 264
MwoI	GCNNNNNNNGC	1 cut(s)	616
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	250, 289
NlaIII	CATG	8 cut(s)	36, 48, 66, 153, 305, 355, 370, 553
NlaIV	GGNNCC	4 cut(s)	85, 252, 457, 514
NspI	RCATGY	1 cut(s)	66
PagI	TCATGA	1 cut(s)	351
PctI	GAATGC	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	224, 481, 577, 580
PleI	GAGTC	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	669
Ppu21I	YACGTR	1 cut(s)	498
PpuMI	RGGWCCY	2 cut(s)	456, 512
Psp124BI	GAGCTC	2 cut(s)	75, 315
Psp5II	RGGWCCY	2 cut(s)	456, 512
Psp6I	CCWGG	2 cut(s)	186, 262
PspGI	CCWGG	2 cut(s)	186, 262
PspN4I	GGNNCC	4 cut(s)	85, 252, 457, 514
PspPI	GGNCC	3 cut(s)	190, 456, 512
PspPPI	RGGWCCY	2 cut(s)	456, 512
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	250, 289
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	50, 496
RsaNI	GTAC	2 cut(s)	49, 495
RseI	CAYNNNNRTG	3 cut(s)	264, 371, 446
SacI	GAGCTC	2 cut(s)	75, 315
SaqAI	TTAA	2 cut(s)	234, 651
SatI	GCNGC	4 cut(s)	223, 480, 576, 579
Sau3AI	GATC	2 cut(s)	250, 289
Sau96I	GGNCC	3 cut(s)	190, 456, 512
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	3 cut(s)	56, 188, 264
SduI	GDGCHC	2 cut(s)	75, 315
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	3 cut(s)	190, 456, 512
SmiMI	CAYNNNNRTG	3 cut(s)	264, 371, 446
Sse9I	AATT	4 cut(s)	20, 145, 240, 593
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	2 cut(s)	75, 315
StyD4I	CCNGG	3 cut(s)	54, 186, 262
TaaI	ACNGT	3 cut(s)	116, 125, 229
TaiI	ACGT	2 cut(s)	375, 500
TasI	AATT	4 cut(s)	20, 145, 240, 593
Tru1I	TTAA	2 cut(s)	234, 651
Tru9I	TTAA	2 cut(s)	234, 651
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	4 cut(s)	222, 479, 575, 578
TspDTI	ATGAA	7 cut(s)	26, 138, 248, 340, 368, 383, 575
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	3 cut(s)	190, 456, 512
XapI	RAATTY	3 cut(s)	145, 240, 593
XceI	RCATGY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.