RLG00000029282

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014792
Physical Location & Seq
Forward (+)
35994246 .. 35997014
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029282

Sequence Viewer

Length: 801 bp
ATGGAAGATGAATGGAAAATTACTGAGGCCATGCCACAGCTCATGGTTGCTTCAGAAAAAGCATTTGAAGCTGCAGATTTCTATGAACTCTTATTTGGAGCACAGAAAACTCGATATAATGAGTTTCCCGTGCAGAGTCAAACTTCTGACAGGTACTGCCGGGTTGCATGCGTGGAGCTCACAATAGGTTCCAGCCCTCTTGTGGTGAGGGATTTTGAGAGTATAAACAATCGGGTTGTGAGAGATGTAAATTCATGGGTTTCCAATTGCCTCAGCCTTCAATGCTTGAACCTGGACCTTATGATGGCAAGGGCTGATCCAGTTCGTCCTGGTGTGATGGTCAGCATTATAAGAGATCCATTTGACGATGTATGGGAGCTCAGTGACTCATCTTATGGTGTCTCAGAAGATGGTTTCATGAACACTGAGTGCATGAACGTGTTGCTTCAAGGCTGGAGCAAGAGTGAGAGGGAGAAGAACCAAGGGCTGTTTGAAACCTATGATTTCACACCAATGGTTGGGTCCTGCGAGACAAAGCAGAATGCAGCACATATAGTCAGTACGTGCAGACATCGAGGTCCCTTATTTGACCCCATTCTGCTTGATTGCAAATGCATGTTGACTTACAAAGGAACACTTGTGGGGCTTGCTGATCCATCTACTTCCTTCAAAGACAGAAAAAGATGCATCGAAAAAGGAGCAGATTTTGTAGTGGAAAAGCCCCTGAATTTGAAAACGCTTACCCACATTCTGTTCAAGGCTGTGAAGAAGCAGAAAAAGGAGAAGATGAAGGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

30.3

Weight (kDa)

5.58

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g48480-like_N PF22656 13 - 71 4.3e-06 Glyoxalase At5g48480-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AasI GACNNNNNNGTC 1 cut(s) 576
AccB7I CCANNNNNTGG 1 cut(s) 518
AclWI GGATC 3 cut(s) 311, 350, 647
AcsI RAATTY 2 cut(s) 250, 727
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 429
AfaI GTAC 2 cut(s) 155, 562
AfiI CCNNNNNNNGG 3 cut(s) 202, 304, 518
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 8 cut(s) 68, 281, 289, 449, 494, 670, 733, 757
AjnI CCWGG 2 cut(s) 291, 328
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 4 cut(s) 40, 71, 178, 379
AluI AGCT 4 cut(s) 40, 71, 178, 379
Alw21I GWGCWC 3 cut(s) 103, 180, 381
Alw26I GTCTC 2 cut(s) 406, 524
AlwI GGATC 3 cut(s) 311, 350, 647
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 71, 545
ApoI RAATTY 2 cut(s) 250, 727
AspS9I GGNCC 3 cut(s) 295, 522, 578
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 3 cut(s) 295, 522, 578
BanII GRGCYC 2 cut(s) 180, 381
Bbv12I GWGCWC 3 cut(s) 103, 180, 381
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 58, 557
BccI CCATC 4 cut(s) 298, 331, 404, 664
BciT130I CCWGG 2 cut(s) 293, 330
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 406, 524
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 72, 546
BlsI GCNGC 2 cut(s) 73, 547
Bme1390I CCNGG 3 cut(s) 161, 293, 330
Bme18I GGWCC 3 cut(s) 295, 522, 578
BmgT120I GGNCC 3 cut(s) 295, 522, 578
BmiI GGNNCC 3 cut(s) 190, 523, 580
BmrFI CCNGG 3 cut(s) 161, 293, 330
BmsI GCATC 2 cut(s) 674, 696
BpmI CTGGAG 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 304, 518
Bse1I ACTGG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 293, 330
BseDI CCNNGG 1 cut(s) 481
BseLI CCNNNNNNNGG 3 cut(s) 202, 304, 518
BseMII CTCAG 5 cut(s) 15, 286, 394, 417, 417
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 58, 557
BsgI GTGCAG 2 cut(s) 152, 586
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 3 cut(s) 103, 180, 381
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 3 cut(s) 202, 304, 518
BsmAI GTCTC 2 cut(s) 406, 524
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 103, 180, 381
Bsp143I GATC 3 cut(s) 316, 355, 652
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 5 cut(s) 16, 285, 393, 416, 418
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 3 cut(s) 190, 523, 580
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 311, 350, 647
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 3 cut(s) 316, 355, 652
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 293, 330
BstBAI YACGTR 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 169, 648
BstDEI CTNAG 5 cut(s) 24, 272, 380, 403, 426
BstKTI GATC 3 cut(s) 319, 358, 655
BstMAI GTCTC 2 cut(s) 406, 524
BstMBI GATC 3 cut(s) 316, 355, 652
BstMWI GCNNNNNNNGC 2 cut(s) 68, 282
BstNI CCWGG 2 cut(s) 293, 330
BstNSI RCATGY 2 cut(s) 171, 619
BstSCI CCNGG 3 cut(s) 159, 291, 328
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 58, 557
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 388, 423
Cac8I GCNNGC 2 cut(s) 169, 648
CaiI CAGNNNCTG 1 cut(s) 156
CciI TCATGA 1 cut(s) 417
Cfr13I GGNCC 3 cut(s) 295, 522, 578
Csp6I GTAC 2 cut(s) 154, 561
CviAII CATG 7 cut(s) 31, 43, 168, 255, 418, 433, 616
CviQI GTAC 2 cut(s) 154, 561
DdeI CTNAG 5 cut(s) 24, 272, 380, 403, 426
DpnI GATC 3 cut(s) 318, 357, 654
DpnII GATC 3 cut(s) 316, 355, 652
DraIII CACNNNGTG 1 cut(s) 429
DrdI GACNNNNNNGTC 1 cut(s) 576
DseDI GACNNNNNNGTC 1 cut(s) 576
Ecl136II GAGCTC 2 cut(s) 178, 379
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 180, 381
Eco47I GGWCC 3 cut(s) 295, 522, 578
Eco53kI GAGCTC 2 cut(s) 178, 379
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 2 cut(s) 178, 379
EcoO109I RGGNCCY 2 cut(s) 522, 578
EcoRII CCWGG 2 cut(s) 291, 328
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 2 cut(s) 617, 689
EcoT38I GRGCYC 2 cut(s) 180, 381
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 7 cut(s) 34, 46, 171, 258, 421, 436, 619
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FaqI GGGAC 1 cut(s) 564
FatI CATG 7 cut(s) 30, 42, 167, 254, 417, 432, 615
Fnu4HI GCNGC 2 cut(s) 72, 546
FriOI GRGCYC 2 cut(s) 180, 381
Fsp4HI GCNGC 2 cut(s) 72, 546
GluI GCNGC 2 cut(s) 72, 546
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 160
Hin1II CATG 7 cut(s) 34, 46, 171, 258, 421, 436, 619
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 2 cut(s) 136, 386
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 3 cut(s) 55, 148, 406
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 1 cut(s) 621
HpyAV CCTTC 3 cut(s) 287, 676, 784
HpyCH4IV ACGT 2 cut(s) 438, 563
HpyCH4V TGCA 9 cut(s) 74, 133, 167, 432, 545, 567, 609, 615, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 282
HpyF3I CTNAG 5 cut(s) 24, 272, 380, 403, 426
HpySE526I ACGT 2 cut(s) 438, 563
Hsp92II CATG 7 cut(s) 34, 46, 171, 258, 421, 436, 619
Kzo9I GATC 3 cut(s) 316, 355, 652
LmnI GCTCC 5 cut(s) 98, 175, 376, 456, 698
Lsp1109I GCAGC 2 cut(s) 58, 557
LweI GCATC 2 cut(s) 674, 696
MaeII ACGT 2 cut(s) 438, 563
MaeIII GTNAC 1 cut(s) 383
MalI GATC 3 cut(s) 318, 357, 654
MboI GATC 3 cut(s) 316, 355, 652
MboII GAAGA 5 cut(s) 17, 419, 487, 778, 796
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 3 cut(s) 103, 180, 381
MluCI AATT 4 cut(s) 18, 250, 265, 727
MlyI GAGTC 2 cut(s) 145, 380
MnlI CCTC 6 cut(s) 19, 201, 207, 281, 462, 569
Mph1103I ATGCAT 2 cut(s) 617, 689
MslI CAYNNNNRTG 2 cut(s) 437, 512
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 3 cut(s) 161, 293, 330
MunI CAATTG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 547
MvaI CCWGG 2 cut(s) 293, 330
MwoI GCNNNNNNNGC 2 cut(s) 68, 282
NciI CCSGG 1 cut(s) 161
NdeII GATC 3 cut(s) 316, 355, 652
NlaIII CATG 7 cut(s) 34, 46, 171, 258, 421, 436, 619
NlaIV GGNNCC 3 cut(s) 190, 523, 580
NmuCI GTSAC 1 cut(s) 383
NsiI ATGCAT 2 cut(s) 617, 689
NspI RCATGY 2 cut(s) 171, 619
PaeI GCATGC 1 cut(s) 171
PagI TCATGA 1 cut(s) 417
PctI GAATGC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 2 cut(s) 73, 547
PleI GAGTC 2 cut(s) 144, 380
PpsI GAGTC 2 cut(s) 144, 380
Ppu21I YACGTR 1 cut(s) 564
PpuMI RGGWCCY 2 cut(s) 522, 578
PsiI TTATAA 1 cut(s) 350
Psp124BI GAGCTC 2 cut(s) 180, 381
Psp5II RGGWCCY 2 cut(s) 522, 578
Psp6I CCWGG 2 cut(s) 291, 328
PspGI CCWGG 2 cut(s) 291, 328
PspN4I GGNNCC 3 cut(s) 190, 523, 580
PspPI GGNCC 3 cut(s) 295, 522, 578
PspPPI RGGWCCY 2 cut(s) 522, 578
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 2 cut(s) 155, 562
RsaNI GTAC 2 cut(s) 154, 561
RseI CAYNNNNRTG 2 cut(s) 437, 512
SacI GAGCTC 2 cut(s) 180, 381
SatI GCNGC 2 cut(s) 72, 546
Sau3AI GATC 3 cut(s) 316, 355, 652
Sau96I GGNCC 3 cut(s) 295, 522, 578
SchI GAGTC 2 cut(s) 145, 380
ScrFI CCNGG 3 cut(s) 161, 293, 330
SduI GDGCHC 3 cut(s) 103, 180, 381
SfaNI GCATC 2 cut(s) 674, 696
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 3 cut(s) 295, 522, 578
SmiMI CAYNNNNRTG 2 cut(s) 437, 512
SphI GCATGC 1 cut(s) 171
Sse9I AATT 4 cut(s) 18, 250, 265, 727
SstI GAGCTC 2 cut(s) 180, 381
StyD4I CCNGG 3 cut(s) 159, 291, 328
StyI CCWWGG 1 cut(s) 481
TaiI ACGT 2 cut(s) 441, 566
TaqI TCGA 3 cut(s) 112, 574, 690
TasI AATT 4 cut(s) 18, 250, 265, 727
TscAI CASTG 2 cut(s) 388, 430
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 2 cut(s) 71, 545
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 24, 99, 243, 406, 434, 449
TspRI CASTG 2 cut(s) 388, 430
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 3 cut(s) 295, 522, 578
XapI RAATTY 2 cut(s) 250, 727
XceI RCATGY 2 cut(s) 171, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
Zsp2I ATGCAT 2 cut(s) 617, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.