Histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18520 AT3G18520 AT3G18520 AT3G18520 |
| fragaria_vesca | FvH4_5g12660 FvH4_5g12660 |
| malus_domestica | MD06G1211800.v1.1 MD14G1222300.v1.1 |
| prunus_persica | Prupe.5G217800_v2.0.a1 Prupe.5G217800_v2.0.a1 |
| pyrus_communis | pycom06g18930 pycom14g18390 |
| rosa_chinensis | RchiOBHm_Chr7g0184671 |
| rosa_laevigata | RLG00000004960 |
| rosa_multiflora | Rmu_ssc0000289.1_g000024 |
| rosa_roxburghii | Rroxscaffold_3G00269430 |
| rosa_rugosa | Rorug06G0464400 Rorug06G0464500 Rorug06G0464600 |
| rosa_samantha | Rh7DG068900 |
| rosa_wichuraiana | Rw7G005680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1417 |
| Acc36I | ACCTGC | 1 cut(s) | 863 |
| Acc65I | GGTACC | 1 cut(s) | 1163 |
| AccB1I | GGYRCC | 2 cut(s) | 1163, 1705 |
| AccI | GTMKAC | 1 cut(s) | 181 |
| AciI | CCGC | 6 cut(s) | 231, 435, 869, 1452, 1482, 1696 |
| AclWI | GGATC | 4 cut(s) | 777, 1346, 1548, 1624 |
| AcsI | RAATTY | 3 cut(s) | 1298, 1587, 1631 |
| AcuI | CTGAAG | 2 cut(s) | 734, 1221 |
| AfaI | GTAC | 6 cut(s) | 302, 394, 1121, 1165, 1601, 1655 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 528, 1166, 1613 |
| AflIII | ACRYGT | 2 cut(s) | 358, 1122 |
| AgsI | TTSAA | 8 cut(s) | 62, 125, 620, 779, 1470, 1586, 1592, 1664 |
| AjiI | CACGTC | 1 cut(s) | 914 |
| AjnI | CCWGG | 4 cut(s) | 700, 933, 1159, 1519 |
| AluBI | AGCT | 8 cut(s) | 30, 42, 689, 1007, 1022, 1028, 1172, 1292 |
| AluI | AGCT | 8 cut(s) | 30, 42, 689, 1007, 1022, 1028, 1172, 1292 |
| Alw26I | GTCTC | 3 cut(s) | 961, 1239, 1684 |
| AlwI | GGATC | 4 cut(s) | 777, 1346, 1548, 1624 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1007, 1010 |
| AoxI | GGCC | 6 cut(s) | 87, 502, 519, 544, 1558, 1604 |
| ApeKI | GCWGC | 9 cut(s) | 671, 857, 1001, 1004, 1007, 1010, 1019, 1172, 1340 |
| ApoI | RAATTY | 3 cut(s) | 1298, 1587, 1631 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1622, 1654 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 57, 377, 747 |
| Asp718I | GGTACC | 1 cut(s) | 1163 |
| AspS9I | GGNCC | 4 cut(s) | 519, 545, 937, 1579 |
| AsuC2I | CCSGG | 2 cut(s) | 948, 1033 |
| AsuHPI | GGTGA | 3 cut(s) | 1306, 1361, 1523 |
| AsuNHI | GCTAGC | 1 cut(s) | 674 |
| AvaII | GGWCC | 2 cut(s) | 937, 1579 |
| BanI | GGYRCC | 2 cut(s) | 1163, 1705 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BauI | CACGAG | 1 cut(s) | 738 |
| BbsI | GAAGAC | 1 cut(s) | 92 |
| BbvI | GCAGC | 9 cut(s) | 658, 844, 994, 997, 1013, 1016, 1031, 1159, 1352 |
| BccI | CCATC | 3 cut(s) | 161, 748, 1776 |
| BceAI | ACGGC | 2 cut(s) | 174, 1709 |
| BciT130I | CCWGG | 4 cut(s) | 702, 935, 1161, 1521 |
| BciVI | GTATCC | 2 cut(s) | 235, 1199 |
| BcnI | CCSGG | 2 cut(s) | 948, 1033 |
| BcoDI | GTCTC | 3 cut(s) | 961, 1239, 1684 |
| BfaI | CTAG | 7 cut(s) | 528, 675, 726, 810, 861, 1358, 1620 |
| BfmI | CTRYAG | 5 cut(s) | 579, 684, 1287, 1380, 1488 |
| BfuAI | ACCTGC | 1 cut(s) | 863 |
| BfuI | GTATCC | 2 cut(s) | 235, 1199 |
| BlpI | GCTNAGC | 1 cut(s) | 43 |
| BmcAI | AGTACT | 1 cut(s) | 1601 |
| Bme1390I | CCNGG | 6 cut(s) | 702, 935, 948, 1033, 1161, 1521 |
| Bme18I | GGWCC | 2 cut(s) | 937, 1579 |
| BmgBI | CACGTC | 1 cut(s) | 914 |
| BmgT120I | GGNCC | 4 cut(s) | 519, 545, 937, 1579 |
| BmiI | GGNNCC | 5 cut(s) | 345, 520, 1165, 1189, 1707 |
| BmrFI | CCNGG | 6 cut(s) | 702, 935, 948, 1033, 1161, 1521 |
| BmsI | GCATC | 9 cut(s) | 56, 226, 248, 488, 569, 698, 1327, 1352, 1514 |
| BmtI | GCTAGC | 1 cut(s) | 678 |
| BpiI | GAAGAC | 1 cut(s) | 92 |
| BpmI | CTGGAG | 3 cut(s) | 1290, 1443, 1595 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 43 |
| BpuEI | CTTGAG | 4 cut(s) | 481, 534, 1008, 1466 |
| BpuMI | CCSGG | 2 cut(s) | 948, 1033 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1068 |
| BsaJI | CCNNGG | 4 cut(s) | 933, 1032, 1191, 1223 |
| BsaWI | WCCGGW | 1 cut(s) | 1166 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1219, 1249 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 528, 1166, 1613 |
| Bse1I | ACTGG | 1 cut(s) | 1607 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1068 |
| BseBI | CCWGG | 4 cut(s) | 702, 935, 1161, 1521 |
| BseDI | CCNNGG | 4 cut(s) | 933, 1032, 1191, 1223 |
| BseGI | GGATG | 5 cut(s) | 482, 631, 1069, 1367, 1529 |
| BseJI | GATNNNNATC | 1 cut(s) | 1068 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 528, 1166, 1613 |
| BseMII | CTCAG | 1 cut(s) | 501 |
| BseNI | ACTGG | 1 cut(s) | 1607 |
| BseXI | GCAGC | 9 cut(s) | 658, 844, 994, 997, 1013, 1016, 1031, 1159, 1352 |
| BseYI | CCCAGC | 1 cut(s) | 1507 |
| BsgI | GTGCAG | 1 cut(s) | 367 |
| BshFI | GGCC | 6 cut(s) | 89, 504, 521, 546, 1560, 1606 |
| BshNI | GGYRCC | 2 cut(s) | 1163, 1705 |
| BsiSI | CCGG | 4 cut(s) | 948, 1032, 1167, 1557 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 528, 1166, 1613 |
| BsmAI | GTCTC | 3 cut(s) | 961, 1239, 1684 |
| BsmBI | CGTCTC | 1 cut(s) | 1684 |
| BsnI | GGCC | 6 cut(s) | 89, 504, 521, 546, 1560, 1606 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| Bsp1407I | TGTACA | 4 cut(s) | 300, 392, 1119, 1653 |
| Bsp143I | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 43 |
| Bsp19I | CCATGG | 2 cut(s) | 1191, 1223 |
| BspACI | CCGC | 6 cut(s) | 231, 435, 869, 1452, 1482, 1696 |
| BspANI | GGCC | 6 cut(s) | 89, 504, 521, 546, 1560, 1606 |
| BspCNI | CTCAG | 1 cut(s) | 502 |
| BspLI | GGNNCC | 5 cut(s) | 345, 520, 1165, 1189, 1707 |
| BspMAI | CTGCAG | 2 cut(s) | 1384, 1492 |
| BspMI | ACCTGC | 1 cut(s) | 863 |
| BspOI | GCTAGC | 1 cut(s) | 678 |
| BspPI | GGATC | 4 cut(s) | 777, 1346, 1548, 1624 |
| BspT107I | GGYRCC | 2 cut(s) | 1163, 1705 |
| BsrGI | TGTACA | 4 cut(s) | 300, 392, 1119, 1653 |
| BsrI | ACTGG | 1 cut(s) | 1607 |
| BssECI | CCNNGG | 4 cut(s) | 933, 1032, 1191, 1223 |
| BssMI | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| BssSI | CACGAG | 1 cut(s) | 738 |
| BssT1I | CCWWGG | 2 cut(s) | 1191, 1223 |
| Bst2BI | CACGAG | 1 cut(s) | 738 |
| Bst2UI | CCWGG | 4 cut(s) | 702, 935, 1161, 1521 |
| Bst4CI | ACNGT | 3 cut(s) | 392, 1211, 1570 |
| Bst6I | CTCTTC | 1 cut(s) | 1483 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 857, 1007, 1010, 1279, 1388 |
| BstAUI | TGTACA | 4 cut(s) | 300, 392, 1119, 1653 |
| BstC8I | GCNNGC | 6 cut(s) | 676, 867, 1384, 1562, 1608, 1698 |
| BstDEI | CTNAG | 3 cut(s) | 43, 510, 1038 |
| BstDSI | CCRYGG | 2 cut(s) | 1191, 1223 |
| BstF5I | GGATG | 5 cut(s) | 482, 631, 1069, 1367, 1529 |
| BstKTI | GATC | 6 cut(s) | 655, 772, 889, 1354, 1556, 1619 |
| BstMAI | GTCTC | 3 cut(s) | 961, 1239, 1684 |
| BstMBI | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| BstNI | CCWGG | 4 cut(s) | 702, 935, 1161, 1521 |
| BstNSI | RCATGY | 6 cut(s) | 362, 857, 1126, 1277, 1408, 1654 |
| BstSCI | CCNGG | 6 cut(s) | 700, 933, 946, 1031, 1159, 1519 |
| BstSFI | CTRYAG | 5 cut(s) | 579, 684, 1287, 1380, 1488 |
| BstV1I | GCAGC | 9 cut(s) | 658, 844, 994, 997, 1013, 1016, 1031, 1159, 1352 |
| BstV2I | GAAGAC | 1 cut(s) | 92 |
| BstX2I | RGATCY | 2 cut(s) | 1553, 1616 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1716 |
| BstYI | RGATCY | 2 cut(s) | 1553, 1616 |
| BsuI | GTATCC | 2 cut(s) | 235, 1199 |
| BsuRI | GGCC | 6 cut(s) | 89, 504, 521, 546, 1560, 1606 |
| BtgI | CCRYGG | 2 cut(s) | 1191, 1223 |
| BtrI | CACGTC | 1 cut(s) | 914 |
| BtsCI | GGATG | 5 cut(s) | 482, 631, 1069, 1367, 1529 |
| BtsI | GCAGTG | 1 cut(s) | 573 |
| BtsIMutI | CAGTG | 1 cut(s) | 573 |
| BveI | ACCTGC | 1 cut(s) | 863 |
| Cac8I | GCNNGC | 6 cut(s) | 676, 867, 1384, 1562, 1608, 1698 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1007, 1010 |
| Cfr13I | GGNCC | 4 cut(s) | 519, 545, 937, 1579 |
| Csp6I | GTAC | 6 cut(s) | 301, 393, 1120, 1164, 1600, 1654 |
| CviQI | GTAC | 6 cut(s) | 301, 393, 1120, 1164, 1600, 1654 |
| DdeI | CTNAG | 3 cut(s) | 43, 510, 1038 |
| DpnI | GATC | 6 cut(s) | 654, 771, 888, 1353, 1555, 1618 |
| DpnII | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| DraI | TTTAAA | 1 cut(s) | 1755 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1417 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1417 |
| Eam1104I | CTCTTC | 1 cut(s) | 1483 |
| EarI | CTCTTC | 1 cut(s) | 1483 |
| Eco130I | CCWWGG | 2 cut(s) | 1191, 1223 |
| Eco147I | AGGCCT | 1 cut(s) | 504 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco47I | GGWCC | 2 cut(s) | 937, 1579 |
| Eco57I | CTGAAG | 2 cut(s) | 734, 1221 |
| EcoO109I | RGGNCCY | 2 cut(s) | 545, 1579 |
| EcoRII | CCWGG | 4 cut(s) | 700, 933, 1159, 1519 |
| EcoT14I | CCWWGG | 2 cut(s) | 1191, 1223 |
| EcoT22I | ATGCAT | 1 cut(s) | 241 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| ErhI | CCWWGG | 2 cut(s) | 1191, 1223 |
| Esp3I | CGTCTC | 1 cut(s) | 1684 |
| FauI | CCCGC | 2 cut(s) | 428, 1689 |
| FauNDI | CATATG | 2 cut(s) | 801, 832 |
| FblI | GTMKAC | 1 cut(s) | 181 |
| FokI | GGATG | 5 cut(s) | 469, 618, 1076, 1374, 1536 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| FspBI | CTAG | 7 cut(s) | 528, 675, 726, 810, 861, 1358, 1620 |
| GsaI | CCCAGC | 1 cut(s) | 1511 |
| GsuI | CTGGAG | 3 cut(s) | 1290, 1443, 1595 |
| HaeIII | GGCC | 6 cut(s) | 89, 504, 521, 546, 1560, 1606 |
| HapII | CCGG | 4 cut(s) | 948, 1032, 1167, 1557 |
| HincII | GTYRAC | 2 cut(s) | 403, 787 |
| HindII | GTYRAC | 2 cut(s) | 403, 787 |
| HindIII | AAGCTT | 1 cut(s) | 1026 |
| HinfI | GANTC | 6 cut(s) | 4, 67, 449, 497, 554, 1228 |
| HpaII | CCGG | 4 cut(s) | 948, 1032, 1167, 1557 |
| HphI | GGTGA | 3 cut(s) | 1306, 1361, 1523 |
| Hpy166II | GTNNAC | 4 cut(s) | 182, 403, 787, 1656 |
| Hpy188I | TCNGA | 7 cut(s) | 34, 52, 613, 753, 1297, 1773, 1790 |
| Hpy8I | GTNNAC | 4 cut(s) | 182, 403, 787, 1656 |
| Hpy99I | CGWCG | 1 cut(s) | 326 |
| HpyAV | CCTTC | 7 cut(s) | 358, 1136, 1196, 1557, 1592, 1722, 1773 |
| HpyCH4III | ACNGT | 3 cut(s) | 392, 1211, 1570 |
| HpyCH4IV | ACGT | 1 cut(s) | 913 |
| HpyF3I | CTNAG | 3 cut(s) | 43, 510, 1038 |
| HpySE526I | ACGT | 1 cut(s) | 913 |
| KpnI | GGTACC | 1 cut(s) | 1167 |
| Kzo9I | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| LmnI | GCTCC | 3 cut(s) | 343, 1169, 1309 |
| Lsp1109I | GCAGC | 9 cut(s) | 658, 844, 994, 997, 1013, 1016, 1031, 1159, 1352 |
| LweI | GCATC | 9 cut(s) | 56, 226, 248, 488, 569, 698, 1327, 1352, 1514 |
| MaeI | CTAG | 7 cut(s) | 528, 675, 726, 810, 861, 1358, 1620 |
| MaeII | ACGT | 1 cut(s) | 913 |
| MaeIII | GTNAC | 5 cut(s) | 489, 627, 1372, 1454, 1638 |
| MalI | GATC | 6 cut(s) | 654, 771, 888, 1353, 1555, 1618 |
| MboI | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| MboII | GAAGA | 7 cut(s) | 92, 224, 305, 717, 755, 1454, 1470 |
| MflI | RGATCY | 2 cut(s) | 1553, 1616 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MlyI | GAGTC | 3 cut(s) | 76, 458, 1237 |
| MmeI | TCCRAC | 1 cut(s) | 1222 |
| Mph1103I | ATGCAT | 1 cut(s) | 241 |
| MroXI | GAANNNNTTC | 3 cut(s) | 57, 377, 747 |
| MseI | TTAA | 5 cut(s) | 74, 254, 1497, 1683, 1754 |
| MslI | CAYNNNNRTG | 6 cut(s) | 960, 996, 1077, 1137, 1360, 1711 |
| MspA1I | CMGCKG | 3 cut(s) | 231, 689, 1007 |
| MspI | CCGG | 4 cut(s) | 948, 1032, 1167, 1557 |
| MspR9I | CCNGG | 6 cut(s) | 702, 935, 948, 1033, 1161, 1521 |
| MvaI | CCWGG | 4 cut(s) | 702, 935, 1161, 1521 |
| NciI | CCSGG | 2 cut(s) | 948, 1033 |
| NcoI | CCATGG | 2 cut(s) | 1191, 1223 |
| NdeI | CATATG | 2 cut(s) | 801, 832 |
| NdeII | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| NheI | GCTAGC | 1 cut(s) | 674 |
| NlaIV | GGNNCC | 5 cut(s) | 345, 520, 1165, 1189, 1707 |
| NmeAIII | GCCGAG | 1 cut(s) | 115 |
| NmuCI | GTSAC | 2 cut(s) | 627, 1638 |
| NsiI | ATGCAT | 1 cut(s) | 241 |
| NspI | RCATGY | 6 cut(s) | 362, 857, 1126, 1277, 1408, 1654 |
| PceI | AGGCCT | 1 cut(s) | 504 |
| PciI | ACATGT | 2 cut(s) | 358, 1122 |
| PdmI | GAANNNNTTC | 3 cut(s) | 57, 377, 747 |
| PfeI | GAWTC | 3 cut(s) | 4, 497, 554 |
| PfoI | TCCNGGA | 2 cut(s) | 700, 1519 |
| PleI | GAGTC | 3 cut(s) | 75, 457, 1236 |
| PpsI | GAGTC | 3 cut(s) | 75, 457, 1236 |
| PpuMI | RGGWCCY | 1 cut(s) | 1579 |
| PscI | ACATGT | 2 cut(s) | 358, 1122 |
| Psp5II | RGGWCCY | 1 cut(s) | 1579 |
| Psp6I | CCWGG | 4 cut(s) | 700, 933, 1159, 1519 |
| PspFI | CCCAGC | 1 cut(s) | 1507 |
| PspGI | CCWGG | 4 cut(s) | 700, 933, 1159, 1519 |
| PspN4I | GGNNCC | 5 cut(s) | 345, 520, 1165, 1189, 1707 |
| PspPI | GGNCC | 4 cut(s) | 519, 545, 937, 1579 |
| PspPPI | RGGWCCY | 1 cut(s) | 1579 |
| PstI | CTGCAG | 2 cut(s) | 1384, 1492 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1007, 1010 |
| PsuI | RGATCY | 2 cut(s) | 1553, 1616 |
| PvuII | CAGCTG | 2 cut(s) | 689, 1007 |
| RsaI | GTAC | 6 cut(s) | 302, 394, 1121, 1165, 1601, 1655 |
| RsaNI | GTAC | 6 cut(s) | 301, 393, 1120, 1164, 1600, 1654 |
| RseI | CAYNNNNRTG | 6 cut(s) | 960, 996, 1077, 1137, 1360, 1711 |
| SaqAI | TTAA | 5 cut(s) | 74, 254, 1497, 1683, 1754 |
| Sau3AI | GATC | 6 cut(s) | 652, 769, 886, 1351, 1553, 1616 |
| Sau96I | GGNCC | 4 cut(s) | 519, 545, 937, 1579 |
| SbfI | CCTGCAGG | 1 cut(s) | 1384 |
| ScaI | AGTACT | 1 cut(s) | 1601 |
| SchI | GAGTC | 3 cut(s) | 76, 458, 1237 |
| ScrFI | CCNGG | 6 cut(s) | 702, 935, 948, 1033, 1161, 1521 |
| SdaI | CCTGCAGG | 1 cut(s) | 1384 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SfaNI | GCATC | 9 cut(s) | 56, 226, 248, 488, 569, 698, 1327, 1352, 1514 |
| SfcI | CTRYAG | 5 cut(s) | 579, 684, 1287, 1380, 1488 |
| SinI | GGWCC | 2 cut(s) | 937, 1579 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 960, 996, 1077, 1137, 1360, 1711 |
| SmlI | CTYRAG | 4 cut(s) | 460, 549, 1023, 1445 |
| SmoI | CTYRAG | 4 cut(s) | 460, 549, 1023, 1445 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1384 |
| SseBI | AGGCCT | 1 cut(s) | 504 |
| SsiI | CCGC | 6 cut(s) | 231, 435, 869, 1452, 1482, 1696 |
| SspI | AATATT | 1 cut(s) | 1095 |
| SspMI | CTAG | 7 cut(s) | 528, 675, 726, 810, 861, 1358, 1620 |
| StuI | AGGCCT | 1 cut(s) | 504 |
| StyD4I | CCNGG | 6 cut(s) | 700, 933, 946, 1031, 1159, 1519 |
| StyI | CCWWGG | 2 cut(s) | 1191, 1223 |
| TaaI | ACNGT | 3 cut(s) | 392, 1211, 1570 |
| TaiI | ACGT | 1 cut(s) | 916 |
| TaqI | TCGA | 1 cut(s) | 661 |
| TaqII | GACCGA | 1 cut(s) | 1102 |
| TatI | WGTACW | 5 cut(s) | 300, 392, 1119, 1599, 1653 |
| TauI | GCSGC | 1 cut(s) | 872 |
| TfiI | GAWTC | 3 cut(s) | 4, 497, 554 |
| Tru1I | TTAA | 5 cut(s) | 74, 254, 1497, 1683, 1754 |
| Tru9I | TTAA | 5 cut(s) | 74, 254, 1497, 1683, 1754 |
| TscAI | CASTG | 1 cut(s) | 580 |
| TseFI | GTSAC | 2 cut(s) | 627, 1638 |
| TseI | GCWGC | 9 cut(s) | 671, 857, 1001, 1004, 1007, 1010, 1019, 1172, 1340 |
| Tsp45I | GTSAC | 2 cut(s) | 627, 1638 |
| TspDTI | ATGAA | 6 cut(s) | 210, 638, 749, 855, 1058, 1155 |
| TspGWI | ACGGA | 1 cut(s) | 929 |
| TspRI | CASTG | 1 cut(s) | 580 |
| VpaK11BI | GGWCC | 2 cut(s) | 937, 1579 |
| XapI | RAATTY | 3 cut(s) | 1298, 1587, 1631 |
| XceI | RCATGY | 6 cut(s) | 362, 857, 1126, 1277, 1408, 1654 |
| XmiI | GTMKAC | 1 cut(s) | 181 |
| XmnI | GAANNNNTTC | 3 cut(s) | 57, 377, 747 |
| XspI | CTAG | 7 cut(s) | 528, 675, 726, 810, 861, 1358, 1620 |
| ZrmI | AGTACT | 1 cut(s) | 1601 |
| Zsp2I | ATGCAT | 1 cut(s) | 241 |