Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010430

Physical Location & Seq

Genomic Coordinates Forward (+)

58930020 .. 58939349

Gene Structure 9330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0464600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGCGGATTCCGGAGCACAGCGTCCGGCCGAAGAGTCGTCGTTCCCCGATTTGCTGAAGAACACGCCGTCGAACATTCGGAGATTGGAAGATGAGATTGAGCAGTGTAAGGGCCACCAGAAGTATCTAGCGCAGACTTTGAGTCCTTCCGACGGTGGCGACGTCCGGTGGTACTTTAACAAGGTCCCTCTGGGAGAGAATGAGCTGGCTGCTTCAGTTCCGAGGACTGAGATAGTGGGGAAGGGGGAGTATTTTCGTTTCGGCATGAGGGACTCTCTGGCAATCGAGGCCTCGTTTTTGCAGAGGGAGGAAGAGTTGCTTTCTTGTTGGTGGAGAGAGTATGCAGAATGCAGTGAAGGTCCGAAAGAGCGGCCTAGTTCCAGTAAGAAAGTGGATGAGAAGGCTCGTTCGGTTCCATTGTATGAAGAAGAAGAAGAGAGAGTTGGTGTCCCTGTTAAGGGAGGGCTTTATGAAGTAGATTTAGTGAAGCGGCATTGTTTCCCTGTATATTGGGATGGAGAAAACCGGCGTGTCTTAAGAGGCCACTGGTTTGCTCGTAAAGGGGTTGATTGGCTGCCACTTCGTGAAAATGTTGCTGAACAATTGGAGATCGCATATCGCAGCCAGGTTTGGCATCGGAGAACTTTTCAGCCCTCTGGACTTTTTGCAGCTCGAGTTGATTTGCAAGGCTCTATCTATGGATTGCATGTGCTTTTCACTGGAGAAGATAATACTTGGGAGGCTTGGCTCAATGCAGATGCTTCTGGTTTTTCTAATGTCATTTCTTTCAGCGGAAATGGAATTAAGTTACGGCGTGGATATTCTGCATCTCACTCTCCAAAACCCACTCAGAATGAATTACGTCAGCAGAAGGAGGAGAAAATGGATGATTATTGTTCACAGATTCCTGTTCGACATCTTGTGTTCATGGTTCATGGTATTGGTCAAAGATTGGAAAAATCCAATTTGGTTGATGACGTCGGTAATTTTCACCATATAACAGCAAGTCTTGCCGAAACACACCTTACTTCACTCCAACGTGATACTCAGAGGGTTCTTTTCATACCATGCCAGTGGAGAAAGGGTTTGAAGCTTAGTGGTGAAACTGCAGTGGAAAAATGTACTTTAGACGGTGTGAAGGGTTTGCGTGTCATGCTGAGTGCGACTGTTCATGATGTGTTATACTACATGAGCCCCATATATTGTCAGGACATCATTAACTCGGTATCCAACCAATTAAATCGGTTATATTTAAAATTTCTTAGGAGGAACCCAGGTTATGATGGAAAGGTTTCCATATATGGTCATTCTTTGGGAAGTGTCCTCTCTTATGATATCCTTTGTCATCAAGAGAATTTGTCCTCCCCATTTCCAATGGATTGGATGTACAAAGAACATGCTAGAAATGAAGAATCTTCTCCTGATATGAACAACCAATCACCTACCGATGACTCTCTTACTAATTTGGGAGATGCAGTCTCTTTTGTATATAATCAAACTGATGACATGGGTTCAATTCTTGAAGGAAAATTGAATGCACAACCAACTCTATTAATGCATGAGGAGGGAAATGCTGTAGATGTGTGTAATGTTGCGAGTTGTGAGACATCAGATTTGAATGAGTTTAATGCAAGGTCTATGGACTCGAAACAAACGCAGGGTAACAATTACGTGCACGAATCAGTTTGTGAAGCTAGCGACAAGTTTAAACAGGATATCTCAGATGAAACTACTAGAATGGAATGTGGAGTCCCAGTTGATCACATAGAGAAAGTGGTTGAAGAAGTATGTGAAGAAACGAGCAATAAAGACGAAGTAGTCAAATCGCTGAGGGAGGAGATTGATTCTCTAAAAGCCAAAATAGCAGAACTGGAAACCAAATGTGGTGGTAGAGATGGTAGTCCTGAAAATGAAGAGGTTCTTGCAACTTCGCCGCAGAGATCCATATCGGAGAAATTGCCTCCCAGGCAAGAGGGCTCAACTCAGAGTTATACCCCTTATATCAAATACACGAAACTTGAATTCAAGGTTGATACATTTTTTGCAGTTGGATCACCCCTTGGGGTCTTCCTGGCCCTTCGTAATATTCGTATTGGAATTGGCAAGGGGAAAGACTATTGGGAAGAGGAAAATATAAGTGAGGAGATGCCAGCTTGTCGGCAAATGTTCAACATATTTCACCCCTTTGATCCTGTTGCATATAGAATAGAGCCACTTGTGTGTAAAGAATACCTCGGCAAGCGACCTGTTATCATACCCTACCACAAAGGTGGAAAGAGGTTGCATATTGGATTTCAGGAATTTACTGAAGATTTAGCTGCTCGTTCTCAAGCAATAATGGATAATCTAAACTTCGTAAAAGTTAAAGTTCTGACAGTTTGCCAGTCAAGAAAGACGGATATCCTAGAAGAAGCAGCAGAAAATGCCGAAGAACGAGAGGAGAGATCATATGGTACTCTTATGATGGAAAGGATAACTGGAAGTGAAGAAGGACGGATAGATCATGTGCTTCAAGACAAGACATTTGAACATCCGTATATTTCTGCAATTGGAGCACATACAAACTATTGGAGGGATTACGATACTGCCCTTTTCATAATGAAACACTTGTATCGCGGTATAGATGAAGACAACTTACCTGCGGAATCTAGTAGGAAATATTCAAAAGATAAGATGGGTTTCCCTGGCTGGTCAGATCAAATAGGGACAGTAGATGAGGAGCTTCCTTTGACATTCTCTGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

916

Amino Acids

104.43

Weight (kDa)

5.27

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDHD	PF02862	673 - 799	1.7e-32	DDHD domain
DDHD	PF02862	804 - 871	4.7e-13	DDHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18520 AT3G18520 AT3G18520 AT3G18520
fragaria_vesca	FvH4_5g12660 FvH4_5g12660
malus_domestica	MD06G1211800.v1.1 MD14G1222300.v1.1
prunus_persica	Prupe.5G217800_v2.0.a1 Prupe.5G217800_v2.0.a1
pyrus_communis	pycom06g18930 pycom14g18390
rosa_chinensis	RchiOBHm_Chr7g0184671
rosa_laevigata	RLG00000004960
rosa_multiflora	Rmu_ssc0000289.1_g000024
rosa_roxburghii	Rroxscaffold_3G00269430
rosa_rugosa	Rorug06G0464400 Rorug06G0464500 Rorug06G0464600
rosa_samantha	Rh7DG068900
rosa_wichuraiana	Rw7G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1817
AatII	GACGTC	2 cut(s)	165, 981
Acc36I	ACCTGC	1 cut(s)	2647
AccBSI	CCGCTC	1 cut(s)	370
AccII	CGCG	1 cut(s)	2616
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	7 cut(s)	5, 370, 490, 792, 1934, 2616, 2642
AclWI	GGATC	3 cut(s)	1935, 2059, 2183
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	1256, 1354, 2021, 2300
AcuI	CTGAAG	3 cut(s)	77, 198, 2328
AcyI	GRCGYC	2 cut(s)	162, 978
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	4 cut(s)	173, 1123, 1388, 2455
AfiI	CCNNNNNNNGG	3 cut(s)	152, 457, 458
AflII	CTTAAG	1 cut(s)	535
AhdI	GACNNNNNGTC	1 cut(s)	141
AjnI	CCWGG	5 cut(s)	624, 1273, 1964, 2070, 2683
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AleI	CACNNNNGTG	2 cut(s)	2218, 2268
AluBI	AGCT	7 cut(s)	205, 671, 1093, 1694, 2153, 2318, 2722
AluI	AGCT	7 cut(s)	205, 671, 1093, 1694, 2153, 2318, 2722
Alw21I	GWGCWC	3 cut(s)	19, 1677, 2557
Alw26I	GTCTC	2 cut(s)	1483, 1598
Alw44I	GTGCAC	1 cut(s)	1673
AlwI	GGATC	3 cut(s)	1935, 2059, 2183
Ama87I	CYCGRG	1 cut(s)	672
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	6 cut(s)	27, 112, 288, 371, 541, 2073
ApaLI	GTGCAC	1 cut(s)	1673
ApeKI	GCWGC	6 cut(s)	209, 574, 621, 668, 2318, 2414
ApoI	RAATTY	4 cut(s)	1256, 1354, 2021, 2300
ArsI	GACNNNNNNTTYG	4 cut(s)	1597, 1629, 2507, 2539
AseI	ATTAAT	1 cut(s)	1553
Asp700I	GAANNNNTTC	2 cut(s)	1291, 1917
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	4 cut(s)	112, 184, 359, 2074
AsuHPI	GGTGA	5 cut(s)	983, 1112, 1431, 2046, 2171
AsuNHI	GCTAGC	1 cut(s)	1694
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	2 cut(s)	184, 359
BaeGI	GKGCMC	1 cut(s)	1677
BaeI	ACNNNNGTAYC	2 cut(s)	2594, 2627
BanII	GRGCYC	2 cut(s)	1196, 1979
BarI	GAAGNNNNNNTAC	2 cut(s)	2619, 2651
BbsI	GAAGAC	2 cut(s)	2059, 2634
Bbv12I	GWGCWC	3 cut(s)	19, 1677, 2557
BbvCI	CCTCAGC	1 cut(s)	1829
BbvI	GCAGC	6 cut(s)	196, 561, 633, 680, 2305, 2426
BccI	CCATC	5 cut(s)	509, 1277, 1889, 2458, 2668
BceAI	ACGGC	2 cut(s)	52, 827
BciT130I	CCWGG	5 cut(s)	626, 1275, 1966, 2072, 2685
BciVI	GTATCC	1 cut(s)	1237
BclI	TGATCA	1 cut(s)	1759
BcoDI	GTCTC	2 cut(s)	1483, 1598
BfaI	CTAG	7 cut(s)	128, 375, 1401, 1695, 1734, 2405, 2649
BfmI	CTRYAG	2 cut(s)	1107, 1575
BfrI	CTTAAG	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	2647
BfuI	GTATCC	1 cut(s)	1237
BglI	GCCNNNNNGGC	1 cut(s)	1966
BisI	GCNGC	9 cut(s)	210, 371, 491, 575, 622, 669, 1934, 2319, 2415
BlsI	GCNGC	9 cut(s)	211, 372, 492, 576, 623, 670, 1935, 2320, 2416
Bme1390I	CCNGG	5 cut(s)	626, 1275, 1966, 2072, 2685
Bme18I	GGWCC	2 cut(s)	184, 359
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	4 cut(s)	112, 184, 359, 2074
BmiI	GGNNCC	3 cut(s)	186, 414, 1271
BmrFI	CCNGG	5 cut(s)	626, 1275, 1966, 2072, 2685
BmrI	ACTGGG	1 cut(s)	1748
BmsI	GCATC	5 cut(s)	643, 748, 836, 1462, 2136
BmtI	GCTAGC	1 cut(s)	1698
BmuI	ACTGGG	1 cut(s)	1748
BpiI	GAAGAC	2 cut(s)	2059, 2634
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	1829
BpuEI	CTTGAG	1 cut(s)	2313
BsaAI	YACGTR	1 cut(s)	1672
BsaBI	GATNNNNATC	1 cut(s)	1945
BsaHI	GRCGYC	2 cut(s)	162, 978
BsaJI	CCNNGG	6 cut(s)	221, 1273, 1964, 2059, 2233, 2683
BsaWI	WCCGGW	2 cut(s)	11, 165
BsaXI	ACNNNNNCTCC	8 cut(s)	299, 329, 1069, 1099, 1461, 1491, 1740, 1770
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 457, 458
Bse118I	RCCGGY	1 cut(s)	525
Bse1I	ACTGG	8 cut(s)	381, 551, 724, 1072, 1754, 1875, 2383, 2482
Bse8I	GATNNNNATC	1 cut(s)	1945
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	5 cut(s)	626, 1275, 1966, 2072, 2685
BseDI	CCNNGG	6 cut(s)	221, 1273, 1964, 2059, 2233, 2683
BseGI	GGATG	5 cut(s)	400, 520, 892, 1389, 2530
BseJI	GATNNNNATC	1 cut(s)	1945
BseLI	CCNNNNNNNGG	3 cut(s)	152, 457, 458
BseMII	CTCAG	7 cut(s)	219, 863, 1061, 1148, 1734, 1820, 1997
BseNI	ACTGG	8 cut(s)	381, 551, 724, 1072, 1754, 1875, 2383, 2482
BseRI	GAGGAG	6 cut(s)	890, 1577, 1850, 2156, 2453, 2732
BseSI	GKGCMC	1 cut(s)	1677
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	6 cut(s)	196, 561, 633, 680, 2305, 2426
Bsh1236I	CGCG	1 cut(s)	2616
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	6 cut(s)	29, 114, 290, 373, 543, 2075
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	3 cut(s)	19, 1677, 2557
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	4 cut(s)	12, 26, 166, 526
BslFI	GGGAC	5 cut(s)	170, 284, 434, 1736, 2719
BslI	CCNNNNNNNGG	3 cut(s)	152, 457, 458
BsmAI	GTCTC	2 cut(s)	1483, 1598
BsmFI	GGGAC	5 cut(s)	170, 284, 434, 1736, 2719
BsmI	GAATGC	2 cut(s)	353, 1540
BsnI	GGCC	6 cut(s)	29, 114, 290, 373, 543, 2075
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	5 cut(s)	19, 1196, 1677, 1979, 2557
Bsp13I	TCCGGA	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	1386
Bsp143I	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
BspACI	CCGC	7 cut(s)	5, 370, 490, 792, 1934, 2616, 2642
BspANI	GGCC	6 cut(s)	29, 114, 290, 373, 543, 2075
BspCNI	CTCAG	7 cut(s)	220, 862, 1060, 1149, 1733, 1821, 1996
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	2616
BspHI	TCATGA	1 cut(s)	1171
BspLI	GGNNCC	3 cut(s)	186, 414, 1271
BspMAI	CTGCAG	1 cut(s)	1111
BspMI	ACCTGC	1 cut(s)	2647
BspOI	GCTAGC	1 cut(s)	1698
BspPI	GGATC	3 cut(s)	1935, 2059, 2183
BspTI	CTTAAG	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	525
BsrGI	TGTACA	1 cut(s)	1386
BsrI	ACTGG	8 cut(s)	381, 551, 724, 1072, 1754, 1875, 2383, 2482
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	6 cut(s)	221, 1273, 1964, 2059, 2233, 2683
BssMI	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
BssNI	GRCGYC	2 cut(s)	162, 978
BssT1I	CCWWGG	1 cut(s)	2059
Bst2UI	CCWGG	5 cut(s)	626, 1275, 1966, 2072, 2685
Bst4CI	ACNGT	5 cut(s)	155, 1133, 1168, 2377, 2710
Bst6I	CTCTTC	5 cut(s)	27, 306, 429, 1908, 2118
BstACI	GRCGYC	2 cut(s)	162, 978
BstAFI	CTTAAG	1 cut(s)	535
BstAPI	GCANNNNNTGC	2 cut(s)	1010, 2423
BstAUI	TGTACA	1 cut(s)	1386
BstBAI	YACGTR	1 cut(s)	1672
BstC8I	GCNNGC	4 cut(s)	207, 1696, 2151, 2240
BstDEI	CTNAG	9 cut(s)	228, 849, 1047, 1094, 1157, 1262, 1720, 1829, 1983
BstF5I	GGATG	5 cut(s)	400, 520, 892, 1389, 2530
BstFNI	CGCG	1 cut(s)	2616
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	8 cut(s)	612, 1762, 1943, 2054, 2191, 2447, 2503, 2698
BstMAI	GTCTC	2 cut(s)	1483, 1598
BstMBI	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 1010, 1153, 1862, 1966, 2423, 2552
BstNI	CCWGG	5 cut(s)	626, 1275, 1966, 2072, 2685
BstNSI	RCATGY	2 cut(s)	710, 1400
BstSCI	CCNGG	5 cut(s)	624, 1273, 1964, 2070, 2683
BstSFI	CTRYAG	2 cut(s)	1107, 1575
BstSLI	GKGCMC	1 cut(s)	1677
BstUI	CGCG	1 cut(s)	2616
BstV1I	GCAGC	6 cut(s)	196, 561, 633, 680, 2305, 2426
BstV2I	GAAGAC	2 cut(s)	2059, 2634
BstX2I	RGATCY	1 cut(s)	1940
BstXI	CCANNNNNNTGG	3 cut(s)	1074, 1380, 2270
BstYI	RGATCY	1 cut(s)	1940
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	1237
BsuRI	GGCC	6 cut(s)	29, 114, 290, 373, 543, 2075
BtsCI	GGATG	5 cut(s)	400, 520, 892, 1389, 2530
BtsI	GCAGTG	3 cut(s)	110, 358, 1116
BtsIMutI	CAGTG	6 cut(s)	110, 358, 544, 717, 1079, 1116
BveI	ACCTGC	1 cut(s)	2647
Cac8I	GCNNGC	4 cut(s)	207, 1696, 2151, 2240
CciI	TCATGA	1 cut(s)	1171
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	4 cut(s)	112, 184, 359, 2074
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	172, 1122, 1387, 2454
CspCI	CAANNNNNGTGG	2 cut(s)	1867, 1902
CviQI	GTAC	4 cut(s)	172, 1122, 1387, 2454
DdeI	CTNAG	9 cut(s)	228, 849, 1047, 1094, 1157, 1262, 1720, 1829, 1983
DpnI	GATC	8 cut(s)	611, 1761, 1942, 2053, 2190, 2446, 2502, 2697
DpnII	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
DraI	TTTAAA	2 cut(s)	1254, 1708
DraIII	CACNNNGTG	1 cut(s)	584
DrdI	GACNNNNNNGTC	1 cut(s)	1817
DriI	GACNNNNNGTC	1 cut(s)	141
DseDI	GACNNNNNNGTC	1 cut(s)	1817
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	5 cut(s)	27, 306, 429, 1908, 2118
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	5 cut(s)	27, 306, 429, 1908, 2118
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	2059
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	2 cut(s)	1196, 1979
Eco32I	GATATC	3 cut(s)	1336, 1717, 2401
Eco47I	GGWCC	2 cut(s)	184, 359
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	77, 198, 2328
Eco88I	CYCGRG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	2021
EcoRII	CCWGG	5 cut(s)	624, 1273, 1964, 2070, 2683
EcoRV	GATATC	3 cut(s)	1336, 1717, 2401
EcoT14I	CCWWGG	1 cut(s)	2059
EcoT22I	ATGCAT	1 cut(s)	1560
EcoT38I	GRGCYC	2 cut(s)	1196, 1979
ErhI	CCWWGG	1 cut(s)	2059
FalI	AAGNNNNNCTT	4 cut(s)	303, 335, 1905, 1937
FaqI	GGGAC	5 cut(s)	170, 284, 434, 1736, 2719
FauNDI	CATATG	1 cut(s)	2449
FbaI	TGATCA	1 cut(s)	1759
Fnu4HI	GCNGC	9 cut(s)	210, 371, 491, 575, 622, 669, 1934, 2319, 2415
FokI	GGATG	5 cut(s)	407, 527, 899, 1396, 2517
FriOI	GRGCYC	2 cut(s)	1196, 1979
Fsp4HI	GCNGC	9 cut(s)	210, 371, 491, 575, 622, 669, 1934, 2319, 2415
FspBI	CTAG	7 cut(s)	128, 375, 1401, 1695, 1734, 2405, 2649
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	9 cut(s)	210, 371, 491, 575, 622, 669, 1934, 2319, 2415
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	6 cut(s)	29, 114, 290, 373, 543, 2075
HapII	CCGG	4 cut(s)	12, 26, 166, 526
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	162, 978
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	1091
HpaII	CCGG	4 cut(s)	12, 26, 166, 526
HphI	GGTGA	5 cut(s)	983, 1112, 1431, 2046, 2171
Hpy166II	GTNNAC	2 cut(s)	899, 1675
Hpy8I	GTNNAC	2 cut(s)	899, 1675
Hpy99I	CGWCG	5 cut(s)	43, 73, 155, 164, 983
HpyAV	CCTTC	9 cut(s)	156, 235, 350, 394, 865, 1132, 1517, 2087, 2483
HpyCH4III	ACNGT	5 cut(s)	155, 1133, 1168, 2377, 2710
HpyCH4IV	ACGT	5 cut(s)	162, 862, 978, 1039, 1671
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 1010, 1153, 1862, 1966, 2423, 2552
HpyF3I	CTNAG	9 cut(s)	228, 849, 1047, 1094, 1157, 1262, 1720, 1829, 1983
HpySE526I	ACGT	5 cut(s)	162, 862, 978, 1039, 1671
Hsp92I	GRCGYC	2 cut(s)	162, 978
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	1759
Kzo9I	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
LmnI	GCTCC	3 cut(s)	14, 2552, 2719
Lsp1109I	GCAGC	6 cut(s)	196, 561, 633, 680, 2305, 2426
LweI	GCATC	5 cut(s)	643, 748, 836, 1462, 2136
MaeI	CTAG	7 cut(s)	128, 375, 1401, 1695, 1734, 2405, 2649
MaeII	ACGT	5 cut(s)	162, 862, 978, 1039, 1671
MaeIII	GTNAC	2 cut(s)	807, 1661
MalI	GATC	8 cut(s)	611, 1761, 1942, 2053, 2190, 2446, 2502, 2697
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
MfeI	CAATTG	2 cut(s)	602, 2547
MflI	RGATCY	1 cut(s)	1940
MhlI	GDGCHC	5 cut(s)	19, 1196, 1677, 1979, 2557
MlyI	GAGTC	6 cut(s)	44, 151, 266, 1445, 1637, 1758
MmeI	TCCRAC	4 cut(s)	174, 1060, 1254, 2029
Mph1103I	ATGCAT	1 cut(s)	1560
MroI	TCCGGA	1 cut(s)	11
MroXI	GAANNNNTTC	2 cut(s)	1291, 1917
MslI	CAYNNNNRTG	3 cut(s)	1072, 2218, 2268
MspA1I	CMGCKG	1 cut(s)	792
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	4 cut(s)	12, 26, 166, 526
MspR9I	CCNGG	5 cut(s)	626, 1275, 1966, 2072, 2685
MssI	GTTTAAAC	1 cut(s)	1708
MunI	CAATTG	2 cut(s)	602, 2547
Mva1269I	GAATGC	2 cut(s)	353, 1540
MvaI	CCWGG	5 cut(s)	626, 1275, 1966, 2072, 2685
MvnI	CGCG	1 cut(s)	2616
MwoI	GCNNNNNNNGC	7 cut(s)	287, 1010, 1153, 1862, 1966, 2423, 2552
NdeI	CATATG	1 cut(s)	2449
NdeII	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
NheI	GCTAGC	1 cut(s)	1694
NlaIV	GGNNCC	3 cut(s)	186, 414, 1271
NmeAIII	GCCGAG	1 cut(s)	2214
NsiI	ATGCAT	1 cut(s)	1560
NspI	RCATGY	2 cut(s)	710, 1400
OliI	CACNNNNGTG	2 cut(s)	2218, 2268
PaeR7I	CTCGAG	1 cut(s)	672
PagI	TCATGA	1 cut(s)	1171
PceI	AGGCCT	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 2086
PctI	GAATGC	2 cut(s)	353, 1540
PdmI	GAANNNNTTC	2 cut(s)	1291, 1917
PfeI	GAWTC	6 cut(s)	8, 904, 1412, 1679, 1844, 2645
PkrI	GCNGC	9 cut(s)	211, 372, 492, 576, 623, 670, 1935, 2320, 2416
PleI	GAGTC	6 cut(s)	43, 150, 266, 1445, 1637, 1757
PmeI	GTTTAAAC	1 cut(s)	1708
PpsI	GAGTC	6 cut(s)	43, 150, 266, 1445, 1637, 1757
Ppu21I	YACGTR	1 cut(s)	1672
PpuMI	RGGWCCY	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	1553
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	5 cut(s)	624, 1273, 1964, 2070, 2683
PspGI	CCWGG	5 cut(s)	624, 1273, 1964, 2070, 2683
PspN4I	GGNNCC	3 cut(s)	186, 414, 1271
PspPI	GGNCC	4 cut(s)	112, 184, 359, 2074
PspPPI	RGGWCCY	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	1111
PsuI	RGATCY	1 cut(s)	1940
RsaI	GTAC	4 cut(s)	173, 1123, 1388, 2455
RsaNI	GTAC	4 cut(s)	172, 1122, 1387, 2454
RseI	CAYNNNNRTG	3 cut(s)	1072, 2218, 2268
SatI	GCNGC	9 cut(s)	210, 371, 491, 575, 622, 669, 1934, 2319, 2415
Sau3AI	GATC	8 cut(s)	609, 1759, 1940, 2051, 2188, 2444, 2500, 2695
Sau96I	GGNCC	4 cut(s)	112, 184, 359, 2074
SchI	GAGTC	6 cut(s)	44, 151, 266, 1445, 1637, 1758
ScrFI	CCNGG	5 cut(s)	626, 1275, 1966, 2072, 2685
SduI	GDGCHC	5 cut(s)	19, 1196, 1677, 1979, 2557
SfaNI	GCATC	5 cut(s)	643, 748, 836, 1462, 2136
SfcI	CTRYAG	2 cut(s)	1107, 1575
Sfr274I	CTCGAG	1 cut(s)	672
SinI	GGWCC	2 cut(s)	184, 359
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	3 cut(s)	1072, 2218, 2268
SmlI	CTYRAG	3 cut(s)	535, 672, 2328
SmoI	CTYRAG	3 cut(s)	535, 672, 2328
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	7 cut(s)	5, 370, 490, 792, 1934, 2616, 2642
SspI	AATATT	2 cut(s)	2086, 2660
SspMI	CTAG	7 cut(s)	128, 375, 1401, 1695, 1734, 2405, 2649
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	5 cut(s)	624, 1273, 1964, 2070, 2683
StyI	CCWWGG	1 cut(s)	2059
TaaI	ACNGT	5 cut(s)	155, 1133, 1168, 2377, 2710
TaiI	ACGT	5 cut(s)	165, 865, 981, 1042, 1674
TaqI	TCGA	5 cut(s)	71, 285, 673, 913, 1646
TatI	WGTACW	2 cut(s)	1121, 1386
TauI	GCSGC	3 cut(s)	373, 493, 1936
TfiI	GAWTC	6 cut(s)	8, 904, 1412, 1679, 1844, 2645
TscAI	CASTG	6 cut(s)	110, 358, 551, 724, 1079, 1116
TseI	GCWGC	6 cut(s)	209, 574, 621, 668, 2318, 2414
TspGWI	ACGGA	3 cut(s)	2411, 2509, 2523
TspRI	CASTG	6 cut(s)	110, 358, 551, 724, 1079, 1116
Vha464I	CTTAAG	1 cut(s)	535
VneI	GTGCAC	1 cut(s)	1673
VpaK11BI	GGWCC	2 cut(s)	184, 359
VspI	ATTAAT	1 cut(s)	1553
XapI	RAATTY	4 cut(s)	1256, 1354, 2021, 2300
XceI	RCATGY	2 cut(s)	710, 1400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	672
XmnI	GAANNNNTTC	2 cut(s)	1291, 1917
XspI	CTAG	7 cut(s)	128, 375, 1401, 1695, 1734, 2405, 2649
ZraI	GACGTC	2 cut(s)	163, 979
Zsp2I	ATGCAT	1 cut(s)	1560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.