Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010430

Physical Location & Seq

Genomic Coordinates Reverse (-)

58921819 .. 58927846

Gene Structure 6028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0464500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGGCGGAGGAGGAGGAGGTTGTGGTAGTCTCCGCGAGCCCTAAGCCGTCGGATCACAAACGAAAGCTCGAGGAGTTGGAGCCCGAACAAGAATCGGTCCTTGAACAGCCGCCTAAAAGCTCCGGCGAGATTGCCGACTCGAATGCGGAGCCCGATGCAGCCAATGAACTTGATGCCTCGCCGCCGTCGGACGAATCTGACGCCAAACGGCCGCGTCTTGATGACAAGTCCGATGATACAGCCAGAGCAAATGGTCACCAGGAGAAGTTGGATGATACTCCGAAGGAGAATGATGAGGAAGAGGTAGTGCCCGGCCCTGCATTTGTTGACCTTACGGAAACAGAGATTGCTCCTTCTCAGCCTGGGTTTGTGGACCTTACGGAAACAGCAACAAATGAAGAACACTTTGGCACCAATGGTGAGACAAGTGACATCCAAAAGCCTTCTGTTGAGGATTCTGTGGCCGATGCCGCTCAGGAACCTCCTCAAGAGGAGCCTCAACCGCACTCCGCTGAGGAAGGGGACGCTGTCCCTGCGCAACCAGAGCAAGGGGACGCTCTCTCTGGGCAACAAGAGAAAACAGATACTCTACCTGTGAACCAAGAGCAAGGTGATACTTTCTCTGGGCAACAGGAGCAAGGGGATGCTTTCTCTGCCCAACAGGATCAACTTCCTGAAAATGAGGCTATCACACACAGAATGGAGGTTCCTAATAATAAGGTTGGGGTTCTGATTGGTAAGGCTGGGGATACTATTCGATACTTGCAATACAATTCTAGAGCAAAAATCCAAATCACAAAGGATGCTGATGCAGATCCATATTCTGCAACAAGGCCTGTAGAGATAACAGGAAGTTTGGATAGTGTCACCAAAGCTGAAAAGCTTATAAATGCTGTTATTGCAGAGGCTGATGCGGGGGGTTCTCCTTCTCTGGTGGCTAGGGGCGTTGCTACCGCACAGGCTGTTGCAGCTGCAGAACAAATTCAGATACAAGTACCAAATGAAAAGGTTGGTTTGATAATAGGCAGAATGGGGGACACCATTAAAAGTCTGCAGGCCAAAACAGGGGCCCGTATCCAGTTGATACCCCAACATCTTCCAAAGGGAGATGAATCCAAAGAAAGGACAGTGCGAGTAAGTGGTGATAAGAAGCAAATTGACATGGCCAGGGAATTGATAAAGGAAGTTATGAATCAGACTGTGAGGCCATCCAGTGGTTTTAACCATCAGGCTTATCGGTCCCATGGACCAGGTGGTCCTCAATGGGGTCCACGAGGTGCTCGTCCATCCCAGCACTCTTCATATGATTATCAGCAACGAGGACCATATCAGTCCCGTACTCAGTACCCTCCTGCATATGGGAATTATCCTCAACATATGGGTCCTAGAAGTGGCTTTGGTTCTGGTTGGGAGCAAAGGCCACCTCCAAACATGCAGGGGATGCCTCCACATGGCGGTGGTTATGATTATTATGGCGGACAAGGAGCTGAAGCCCCAGCCCAACATTCTACTCATGGCCCTTCTCATGCTCATGGCCCTTCTCCTAACCCTATAATGGGTGGACCTCCATCCCAAGCAAACTATAATTATGGACAGCCACATGGTTCAGACTATAGGCATCCGGCTCCTTTTTCTCATGCTGCACCTCCTCAGCATGGCTATGGGCATGGGTATGAAGAACCAAAATATGATAATCACGCTCCACCACAGCACTCATATGGAGGACACGGAGCTTCTCAGCCGTATCCACAAACTGGAGCTCAGCCAGGTTATGGTCCACAGCAGCATTATGGTAAGCCACCAGCATATACCATGCCATCTCAGGGACCACCTCCCCAGTCTTATGGCGGCCCCATGGGTAGCCAACCAGGAGAAGCAGTTTATCAGACACCAGCTCAGTCATATGGTCAGAATGTCCCAGCTCAACAGCCATATCCATATGCATCCACTGCACCTGCACAGCAGACTTATGCTCCGTATGGTTCTGCCCCAGCTGCTGATGGGTACACTCAGCCACCAACTGCTTCGAGTGCAGGTTATCCACAGCAAGGAGGGCAGCCTGCTAGTTATGGTCAGCCTGGCTCGCAGCCTGCACCTGGCTATGCACAAGCAGCTCCTGCAGGGTATGCACAATACCCAACGTCTCAACAAGGTTACTCCGAGCAGTCTGCTTCATACACTGGTGGTTATGGGTACCAAGGGTCTCAAGATCCTGCCTATGGAGGTGTCTCTGCACCTGCCTATGGTGGAGCTCCAGCTGCGCAACAGGGCTACGCACAACCGGCACCCGCAGCAGCTGGGGCACAGCAGGGCTACGCCCAGCCAGCACCAGCAACAACTCAACAAAGCTATGATCAATCGATCCCGCAGTCAGGCGGTTATGGGAAAACAGTATCACCTCAGCCTGGCTACGCTCAATACGACTCGAGTCAAATGTATGCTGCACCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

817

Amino Acids

86.51

Weight (kDa)

4.83

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	231 - 297	3.6e-15	KH domain
KH_1	PF00013	328 - 395	3.1e-18	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18520 AT3G18520 AT3G18520 AT3G18520
fragaria_vesca	FvH4_5g12660 FvH4_5g12660
malus_domestica	MD06G1211800.v1.1 MD14G1222300.v1.1
prunus_persica	Prupe.5G217800_v2.0.a1 Prupe.5G217800_v2.0.a1
pyrus_communis	pycom06g18930 pycom14g18390
rosa_chinensis	RchiOBHm_Chr7g0184671
rosa_laevigata	RLG00000004960
rosa_multiflora	Rmu_ssc0000289.1_g000024
rosa_roxburghii	Rroxscaffold_3G00269430
rosa_rugosa	Rorug06G0464400 Rorug06G0464500 Rorug06G0464600
rosa_samantha	Rh7DG068900
rosa_wichuraiana	Rw7G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AarI	CACCTGC	2 cut(s)	1963, 2245
AasI	GACNNNNNNGTC	1 cut(s)	1254
Acc16I	TGCGCA	2 cut(s)	537, 2262
Acc36I	ACCTGC	3 cut(s)	1963, 2024, 2245
Acc65I	GGTACC	1 cut(s)	2193
AccB1I	GGYRCC	3 cut(s)	410, 2193, 2284
AccB7I	CCANNNNNTGG	3 cut(s)	1214, 1754, 1772
AccBSI	CCGCTC	1 cut(s)	473
AccII	CGCG	2 cut(s)	35, 214
AclWI	GGATC	5 cut(s)	60, 672, 809, 2204, 2356
AcoI	YGGCCR	3 cut(s)	209, 462, 1164
AcsI	RAATTY	1 cut(s)	981
AcuI	CTGAAG	1 cut(s)	1509
AcyI	GRCGYC	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	1277
AfaI	GTAC	5 cut(s)	996, 1339, 1346, 2006, 2195
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	9 cut(s)	258, 361, 1166, 1249, 1765, 1867, 2077, 2095, 2404
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
Alw21I	GWGCWC	3 cut(s)	1282, 1762, 2254
Alw26I	GTCTC	5 cut(s)	34, 416, 2148, 2208, 2233
AlwI	GGATC	5 cut(s)	60, 672, 809, 2204, 2356
AlwNI	CAGNNNCTG	4 cut(s)	908, 1997, 2117, 2297
Ama87I	CYCGRG	2 cut(s)	68, 2425
ApaI	GGGCCC	1 cut(s)	1072
ApoI	RAATTY	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	981
Asp718I	GGTACC	1 cut(s)	2193
AspLEI	GCGC	2 cut(s)	538, 2263
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	6 cut(s)	248, 431, 623, 859, 1154, 2388
AvaI	CYCGRG	2 cut(s)	68, 2425
BaeGI	GKGCMC	3 cut(s)	312, 1072, 2305
BalI	TGGCCA	1 cut(s)	1166
BanI	GGYRCC	3 cut(s)	410, 2193, 2284
BanII	GRGCYC	6 cut(s)	41, 84, 153, 1072, 1762, 2254
BauI	CACGAG	1 cut(s)	1272
Bbv12I	GWGCWC	3 cut(s)	1282, 1762, 2254
BbvCI	CCTCAGC	3 cut(s)	513, 1650, 2400
BccI	CCATC	6 cut(s)	1216, 1233, 1294, 1576, 1825, 1994
BceAI	ACGGC	4 cut(s)	31, 169, 224, 1726
BcgI	CGANNNNNNTGC	4 cut(s)	125, 159, 2150, 2184
BciT130I	CCWGG	9 cut(s)	260, 363, 1168, 1251, 1767, 1869, 2079, 2097, 2406
BciVI	GTATCC	3 cut(s)	742, 1085, 1755
BclI	TGATCA	1 cut(s)	2353
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	5 cut(s)	34, 416, 2148, 2208, 2233
BfaI	CTAG	4 cut(s)	777, 939, 1386, 2064
BfmI	CTRYAG	5 cut(s)	837, 972, 1052, 1612, 2118
BfuAI	ACCTGC	3 cut(s)	1963, 2024, 2245
BfuI	GTATCC	3 cut(s)	742, 1085, 1755
BlpI	GCTNAGC	1 cut(s)	1761
BmeT110I	CYCGRG	2 cut(s)	68, 2425
BmrI	ACTGGG	1 cut(s)	1831
BmuI	ACTGGG	1 cut(s)	1831
BoxI	GACNNNNGTC	1 cut(s)	2427
BpmI	CTGGAG	2 cut(s)	1776, 2238
Bpu10I	CCTNAGC	5 cut(s)	42, 474, 513, 1650, 2400
Bpu1102I	GCTNAGC	1 cut(s)	1761
BpuEI	CTTGAG	2 cut(s)	471, 2190
BpuMI	CCSGG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	2360
BsaBI	GATNNNNATC	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	2208
BsaJI	CCNNGG	5 cut(s)	362, 1167, 1243, 1854, 2197
BsaXI	ACNNNNNCTCC	4 cut(s)	1863, 1893, 1957, 1987
Bse118I	RCCGGY	1 cut(s)	2281
Bse1I	ACTGG	5 cut(s)	1078, 1212, 1759, 1837, 2185
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	9 cut(s)	260, 363, 1168, 1251, 1767, 1869, 2079, 2097, 2406
BseCI	ATCGAT	1 cut(s)	2360
BseDI	CCNNGG	5 cut(s)	362, 1167, 1243, 1854, 2197
BseJI	GATNNNNATC	1 cut(s)	813
BseNI	ACTGG	5 cut(s)	1078, 1212, 1759, 1837, 2185
BseRI	GAGGAG	7 cut(s)	23, 26, 29, 86, 474, 506, 1638
BseSI	GKGCMC	3 cut(s)	312, 1072, 2305
BseX3I	CGGCCG	1 cut(s)	209
BseYI	CCCAGC	7 cut(s)	743, 1290, 1495, 1918, 1990, 2297, 2319
BsgI	GTGCAG	7 cut(s)	1626, 1935, 1941, 2052, 2076, 2217, 2427
Bsh1236I	CGCG	2 cut(s)	35, 214
Bsh1285I	CGRYCG	1 cut(s)	212
BshNI	GGYRCC	3 cut(s)	410, 2193, 2284
BshVI	ATCGAT	1 cut(s)	2360
BsiEI	CGRYCG	1 cut(s)	212
BsiHKAI	GWGCWC	3 cut(s)	1282, 1762, 2254
BsiHKCI	CYCGRG	2 cut(s)	68, 2425
BsiSI	CCGG	4 cut(s)	123, 312, 1622, 2282
BslFI	GGGAC	8 cut(s)	515, 536, 566, 1049, 1225, 1318, 1839, 1901
BsmAI	GTCTC	5 cut(s)	34, 416, 2148, 2208, 2233
BsmBI	CGTCTC	1 cut(s)	2148
BsmFI	GGGAC	8 cut(s)	515, 536, 566, 1049, 1225, 1318, 1839, 1901
BsmI	GAATGC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	2208
BsoBI	CYCGRG	2 cut(s)	68, 2425
Bsp120I	GGGCCC	1 cut(s)	1068
Bsp1286I	GDGCHC	9 cut(s)	41, 84, 153, 312, 1072, 1282, 1762, 2254, 2305
Bsp143I	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
Bsp1720I	GCTNAGC	1 cut(s)	1761
Bsp19I	CCATGG	2 cut(s)	1243, 1854
BspDI	ATCGAT	1 cut(s)	2360
BspFNI	CGCG	2 cut(s)	35, 214
BspMAI	CTGCAG	3 cut(s)	976, 1056, 2122
BspMI	ACCTGC	3 cut(s)	1963, 2024, 2245
BspPI	GGATC	5 cut(s)	60, 672, 809, 2204, 2356
BspT107I	GGYRCC	3 cut(s)	410, 2193, 2284
BspTNI	GGTCTC	1 cut(s)	2208
BsrBI	CCGCTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	2281
BsrI	ACTGG	5 cut(s)	1078, 1212, 1759, 1837, 2185
BssAI	RCCGGY	1 cut(s)	2281
BssECI	CCNNGG	5 cut(s)	362, 1167, 1243, 1854, 2197
BssMI	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	1272
BssT1I	CCWWGG	3 cut(s)	1243, 1854, 2197
Bst2BI	CACGAG	1 cut(s)	1272
Bst2UI	CCWGG	9 cut(s)	260, 363, 1168, 1251, 1767, 1869, 2079, 2097, 2406
Bst4CI	ACNGT	3 cut(s)	1129, 1201, 2392
Bst6I	CTCTTC	2 cut(s)	294, 1303
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	4 cut(s)	1441, 1949, 2117, 2126
BstC8I	GCNNGC	6 cut(s)	37, 1056, 2061, 2084, 2091, 2325
BstDSI	CCRYGG	2 cut(s)	1243, 1854
BstEII	GGTNACC	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	35, 214
BstHHI	GCGC	2 cut(s)	538, 2263
BstKTI	GATC	6 cut(s)	55, 667, 817, 2212, 2356, 2364
BstMAI	GTCTC	5 cut(s)	34, 416, 2148, 2208, 2233
BstMBI	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
BstMCI	CGRYCG	1 cut(s)	212
BstNI	CCWGG	9 cut(s)	260, 363, 1168, 1251, 1767, 1869, 2079, 2097, 2406
BstNSI	RCATGY	1 cut(s)	1435
BstPAI	GACNNNNGTC	1 cut(s)	2427
BstPI	GGTNACC	1 cut(s)	254
BstSFI	CTRYAG	5 cut(s)	837, 972, 1052, 1612, 2118
BstSLI	GKGCMC	3 cut(s)	312, 1072, 2305
BstUI	CGCG	2 cut(s)	35, 214
BstX2I	RGATCY	2 cut(s)	814, 2209
BstXI	CCANNNNNNTGG	1 cut(s)	1844
BstYI	RGATCY	2 cut(s)	814, 2209
BstZI	CGGCCG	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	2360
BsuI	GTATCC	3 cut(s)	742, 1085, 1755
BsuTUI	ATCGAT	1 cut(s)	2360
BtgI	CCRYGG	2 cut(s)	1243, 1854
BtsI	GCAGTG	1 cut(s)	1947
BtsIMutI	CAGTG	4 cut(s)	1134, 1219, 1947, 2178
BveI	ACCTGC	3 cut(s)	1963, 2024, 2245
Cac8I	GCNNGC	6 cut(s)	37, 1056, 2061, 2084, 2091, 2325
CaiI	CAGNNNCTG	4 cut(s)	908, 1997, 2117, 2297
CfoI	GCGC	2 cut(s)	538, 2263
Cfr10I	RCCGGY	1 cut(s)	2281
ClaI	ATCGAT	1 cut(s)	2360
CseI	GACGC	4 cut(s)	203, 209, 533, 563
CsiI	ACCWGGT	1 cut(s)	1249
Csp6I	GTAC	5 cut(s)	995, 1338, 1345, 2005, 2194
CviQI	GTAC	5 cut(s)	995, 1338, 1345, 2005, 2194
DpnI	GATC	6 cut(s)	54, 666, 816, 2211, 2355, 2363
DpnII	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
DraIII	CACNNNGTG	1 cut(s)	1277
DrdI	GACNNNNNNGTC	1 cut(s)	1254
DseDI	GACNNNNNNGTC	1 cut(s)	1254
EaeI	YGGCCR	3 cut(s)	209, 462, 1164
EagI	CGGCCG	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	294, 1303
EarI	CTCTTC	2 cut(s)	294, 1303
EciI	GGCGGA	2 cut(s)	20, 1491
Ecl136II	GAGCTC	2 cut(s)	1760, 2252
EclXI	CGGCCG	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	1243, 1854, 2197
Eco147I	AGGCCT	1 cut(s)	835
Eco24I	GRGCYC	6 cut(s)	41, 84, 153, 1072, 1762, 2254
Eco31I	GGTCTC	1 cut(s)	2208
Eco52I	CGGCCG	1 cut(s)	209
Eco53kI	GAGCTC	2 cut(s)	1760, 2252
Eco57I	CTGAAG	1 cut(s)	1509
Eco88I	CYCGRG	2 cut(s)	68, 2425
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	1760, 2252
EcoO109I	RGGNCCY	2 cut(s)	1068, 1382
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	9 cut(s)	258, 361, 1166, 1249, 1765, 1867, 2077, 2095, 2404
EcoT14I	CCWWGG	3 cut(s)	1243, 1854, 2197
EcoT22I	ATGCAT	1 cut(s)	1945
EcoT38I	GRGCYC	6 cut(s)	41, 84, 153, 1072, 1762, 2254
ErhI	CCWWGG	3 cut(s)	1243, 1854, 2197
Esp3I	CGTCTC	1 cut(s)	2148
FaqI	GGGAC	8 cut(s)	515, 536, 566, 1049, 1225, 1318, 1839, 1901
FauI	CCCGC	3 cut(s)	907, 2296, 2373
FauNDI	CATATG	6 cut(s)	1303, 1357, 1377, 1717, 1903, 1939
FbaI	TGATCA	1 cut(s)	2353
FriOI	GRGCYC	6 cut(s)	41, 84, 153, 1072, 1762, 2254
FspBI	CTAG	4 cut(s)	777, 939, 1386, 2064
FspI	TGCGCA	2 cut(s)	537, 2262
GlaI	GCGC	2 cut(s)	537, 2262
GsaI	CCCAGC	7 cut(s)	747, 1294, 1499, 1922, 1994, 2301, 2323
GsuI	CTGGAG	2 cut(s)	1776, 2238
HapII	CCGG	4 cut(s)	123, 312, 1622, 2282
HgaI	GACGC	4 cut(s)	203, 209, 533, 563
HhaI	GCGC	2 cut(s)	538, 2263
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	2 cut(s)	536, 2261
HinP1I	GCGC	2 cut(s)	536, 2261
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	8 cut(s)	92, 137, 194, 455, 1112, 1192, 2423, 2428
HpaII	CCGG	4 cut(s)	123, 312, 1622, 2282
HphI	GGTGA	6 cut(s)	248, 431, 623, 859, 1154, 2388
Hpy166II	GTNNAC	7 cut(s)	328, 373, 598, 1271, 1562, 1778, 2007
Hpy188III	TCNNGA	6 cut(s)	218, 476, 488, 674, 777, 2207
Hpy8I	GTNNAC	7 cut(s)	328, 373, 598, 1271, 1562, 1778, 2007
Hpy99I	CGWCG	2 cut(s)	52, 190
HpyAV	CCTTC	7 cut(s)	277, 363, 453, 512, 936, 1530, 1548
HpyCH4III	ACNGT	3 cut(s)	1129, 1201, 2392
HpyCH4IV	ACGT	1 cut(s)	2141
HpySE526I	ACGT	1 cut(s)	2141
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	2 cut(s)	536, 2261
KpnI	GGTACC	1 cut(s)	2197
Ksp22I	TGATCA	1 cut(s)	2353
Kzo9I	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
MabI	ACCWGGT	1 cut(s)	1249
MaeI	CTAG	4 cut(s)	777, 939, 1386, 2064
MaeII	ACGT	1 cut(s)	2141
MaeIII	GTNAC	4 cut(s)	254, 428, 865, 2153
MalI	GATC	6 cut(s)	54, 666, 816, 2211, 2355, 2363
MbiI	CCGCTC	1 cut(s)	473
MboI	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
MboII	GAAGA	5 cut(s)	311, 410, 1088, 1290, 1688
MflI	RGATCY	2 cut(s)	814, 2209
MhlI	GDGCHC	9 cut(s)	41, 84, 153, 312, 1072, 1282, 1762, 2254, 2305
MlsI	TGGCCA	1 cut(s)	1166
MluCI	AATT	6 cut(s)	772, 981, 1155, 1172, 1363, 1585
MluNI	TGGCCA	1 cut(s)	1166
MlyI	GAGTC	3 cut(s)	131, 2417, 2437
MmeI	TCCRAC	4 cut(s)	30, 57, 168, 249
Mox20I	TGGCCA	1 cut(s)	1166
Mph1103I	ATGCAT	1 cut(s)	1945
MroXI	GAANNNNTTC	1 cut(s)	981
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	2 cut(s)	1044, 1221
MslI	CAYNNNNRTG	5 cut(s)	1455, 1530, 1659, 1671, 1716
Msp20I	TGGCCA	1 cut(s)	1166
MspA1I	CMGCKG	5 cut(s)	512, 971, 1994, 2258, 2297
MspI	CCGG	4 cut(s)	123, 312, 1622, 2282
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	9 cut(s)	260, 363, 1168, 1251, 1767, 1869, 2079, 2097, 2406
MvnI	CGCG	2 cut(s)	35, 214
NciI	CCSGG	1 cut(s)	312
NcoI	CCATGG	2 cut(s)	1243, 1854
NdeI	CATATG	6 cut(s)	1303, 1357, 1377, 1717, 1903, 1939
NdeII	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
NmuCI	GTSAC	3 cut(s)	254, 428, 865
NsbI	TGCGCA	2 cut(s)	537, 2262
NsiI	ATGCAT	1 cut(s)	1945
NspI	RCATGY	1 cut(s)	1435
PaeR7I	CTCGAG	2 cut(s)	68, 2425
PaqCI	CACCTGC	2 cut(s)	1963, 2245
PceI	AGGCCT	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	2 cut(s)	1279, 2418
PctI	GAATGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	5 cut(s)	92, 194, 455, 1112, 1192
PflFI	GACNNNGTC	1 cut(s)	527
PflMI	CCANNNNNTGG	3 cut(s)	1214, 1754, 1772
PleI	GAGTC	3 cut(s)	131, 2417, 2436
PpsI	GAGTC	3 cut(s)	131, 2417, 2436
PpuMI	RGGWCCY	1 cut(s)	1382
PshAI	GACNNNNGTC	1 cut(s)	2427
PsiI	TTATAA	1 cut(s)	887
Psp124BI	GAGCTC	2 cut(s)	1762, 2254
Psp5II	RGGWCCY	1 cut(s)	1382
Psp6I	CCWGG	9 cut(s)	258, 361, 1166, 1249, 1765, 1867, 2077, 2095, 2404
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	7 cut(s)	743, 1290, 1495, 1918, 1990, 2297, 2319
PspGI	CCWGG	9 cut(s)	258, 361, 1166, 1249, 1765, 1867, 2077, 2095, 2404
PspOMI	GGGCCC	1 cut(s)	1068
PspPPI	RGGWCCY	1 cut(s)	1382
PspXI	VCTCGAGB	2 cut(s)	68, 2425
PstI	CTGCAG	3 cut(s)	976, 1056, 2122
PstNI	CAGNNNCTG	4 cut(s)	908, 1997, 2117, 2297
PsuI	RGATCY	2 cut(s)	814, 2209
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	4 cut(s)	971, 1994, 2258, 2297
RsaI	GTAC	5 cut(s)	996, 1339, 1346, 2006, 2195
RsaNI	GTAC	5 cut(s)	995, 1338, 1345, 2005, 2194
RseI	CAYNNNNRTG	5 cut(s)	1455, 1530, 1659, 1671, 1716
SacI	GAGCTC	2 cut(s)	1762, 2254
SaqAI	TTAA	2 cut(s)	1044, 1221
Sau3AI	GATC	6 cut(s)	52, 664, 814, 2209, 2353, 2361
SbfI	CCTGCAGG	1 cut(s)	2122
SchI	GAGTC	3 cut(s)	131, 2417, 2437
SdaI	CCTGCAGG	1 cut(s)	2122
SduI	GDGCHC	9 cut(s)	41, 84, 153, 312, 1072, 1282, 1762, 2254, 2305
SexAI	ACCWGGT	1 cut(s)	1249
SfcI	CTRYAG	5 cut(s)	837, 972, 1052, 1612, 2118
Sfr274I	CTCGAG	2 cut(s)	68, 2425
SlaI	CTCGAG	2 cut(s)	68, 2425
SmiMI	CAYNNNNRTG	5 cut(s)	1455, 1530, 1659, 1671, 1716
SmlI	CTYRAG	4 cut(s)	68, 486, 2205, 2425
SmoI	CTYRAG	4 cut(s)	68, 486, 2205, 2425
Sse8387I	CCTGCAGG	1 cut(s)	2122
Sse9I	AATT	6 cut(s)	772, 981, 1155, 1172, 1363, 1585
SseBI	AGGCCT	1 cut(s)	835
SspMI	CTAG	4 cut(s)	777, 939, 1386, 2064
SstI	GAGCTC	2 cut(s)	1762, 2254
StuI	AGGCCT	1 cut(s)	835
StyI	CCWWGG	3 cut(s)	1243, 1854, 2197
TaaI	ACNGT	3 cut(s)	1129, 1201, 2392
TaiI	ACGT	1 cut(s)	2144
TaqI	TCGA	6 cut(s)	69, 140, 757, 2027, 2360, 2426
TaqII	GACCGA	2 cut(s)	85, 1227
TasI	AATT	6 cut(s)	772, 981, 1155, 1172, 1363, 1585
TauI	GCSGC	5 cut(s)	112, 184, 214, 473, 1851
TfiI	GAWTC	5 cut(s)	92, 194, 455, 1112, 1192
Tru1I	TTAA	2 cut(s)	1044, 1221
Tru9I	TTAA	2 cut(s)	1044, 1221
TscAI	CASTG	4 cut(s)	1134, 1219, 1954, 2185
TseFI	GTSAC	3 cut(s)	254, 428, 865
Tsp45I	GTSAC	3 cut(s)	254, 428, 865
TspDTI	ATGAA	8 cut(s)	180, 411, 1017, 1125, 1205, 1290, 1689, 2163
TspGWI	ACGGA	4 cut(s)	350, 395, 1743, 1965
TspRI	CASTG	4 cut(s)	1134, 1219, 1954, 2185
Tth111I	GACNNNGTC	1 cut(s)	527
Van91I	CCANNNNNTGG	3 cut(s)	1214, 1754, 1772
XapI	RAATTY	1 cut(s)	981
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	1 cut(s)	1435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1250
XhoI	CTCGAG	2 cut(s)	68, 2425
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	4 cut(s)	777, 939, 1386, 2064
Zsp2I	ATGCAT	1 cut(s)	1945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.