Rroxscaffold_3G00269430

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010430
Physical Location & Seq
Forward (+)
62314437 .. 62320085
5649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269430.1

Sequence Viewer

Length: 1521 bp
ATGATTGTGGCTGAAAATCTCCATGCAAGCACTGAACAGAACTTGATATTGGAAACACTTCAAATGACTCGTTTAGCTAATGGGGAGGCGGAGATAAGTCATCACAAATCGAACAATGAAGTCTTCGGCAAAGATGGATCGACAGATGATGTGAATGGAAACACACTGCCTGATGTTTCAAGTAAAAAGGCAGGACAGCAAAAAGAAATGACTTTCCAAGATGTGTACAACCAAGACCTCGATGACGAGGATGATGACAGTGATTGGGAGCCCCTGCAAAAGAATGTTGAACTCGTCAAGTGGTTCTGCACCAACTGCACAATGGTCAACCTTGGGGATGTCAATTGCGATATATGTGGGGAACATAGAGAATCTGGAATTCTTAGGCATGGTTTTTTGGCATCTCCCCTGTTACCGGATTCAGGCCTAACTGAGATTGATTCTGACATTAGAGAAAGACACAAAGGGTCACAAGATTCAGCGTCTAACAGTTCTACTGCTGTTGGTTTTGATGAGAGAATGTTGCTACATTCAGAAGTATCTTTCCAGGACGATGTTATCCAATTCCCGCTAGAGAAATCACGCGTGAAGAACTTCAGATGTTATTTCACCCCTGACACATATGCCAATGAACATTCAGCACGCGCTGCTAGGCTTGCAGCAGGTTTATGTGCTGATCTTGCTTCAGCAATTGTTTCTGGACGTACAAAAAATGGTTTTGCTCTGGTTCGTCCTCCTGGTCATCATGCTGGTATAAAGCAGGCTATGGGGTTTTGCCTCCACAATAATGCAGCAGTTGCTGCATTAGCAGCTCAAGTTTCTGGGGCTAAGAAAGTGCTAATTGTTGATTGGGATGTTCATCATGGGAATGGCACCCAGGAAATATTTGAACAGAACAAATCGGTTGGTACTATGGGAGCTGAAGGATACTGTGTGAATGTTCCATGGAGTCGTGGTGGAGTGGGTGATAATGACTATGTTTTCGCATTTCAGCATGTTGTGCTTCCTATAGCTTCTGCATTTGCTCCTGATTTCACCATCATATCAGCAGGATTTGATGCAGCGAGGGGTGATCCTCTAGGATGCTGTGATGTTACTCCTGCTGGTTATGCAAAGATGACTGACATGTTGACTGACTTGTGTGGAGGGAAGTTGTTAGTCATTCTTGAGGGCGGGTACAATCTACGTTCAATATCATCTTCTGCTACTTCAGTAATTAAGGTATTACTAGGTGAAAGACCAGGATGTGAATTGGACAACACTTCACCTTCCAGATCTGGACTGCAAACTGTTCTAGAGGTCCTTAAAATTCAAAGTAACTACTGGCCTGTTTTGGCATCCAACTTTACGAAATTGCAGTCACAGGCGAGAATGCACTCTATTGAAAACAAAAGAAAACAAATAGAAAAGAAACGGAGGGCTGTGACTCCAATGTGGTGGAAATGGGGACGGAAGGGCCTACTGTATCATTTTTTAAATGGGCAAAATCGGCATGCCCATGTGAAGCGAAAGGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

506

Amino Acids

55.55

Weight (kDa)

6.06

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 201 - 305 5e-37 Histone deacetylase domain
Hist_deacetyl PF00850 303 - 409 2.9e-27 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 872
AccII CGCG 2 cut(s) 585, 645
AciI CCGC 3 cut(s) 89, 569, 1173
AclWI GGATC 2 cut(s) 145, 1067
AcsI RAATTY 2 cut(s) 378, 1308
AcuI CTGAAG 4 cut(s) 580, 669, 942, 1194
AfaI GTAC 4 cut(s) 227, 706, 910, 1178
AfiI CCNNNNNNNGG 2 cut(s) 415, 422
AflIII ACRYGT 2 cut(s) 583, 1125
AgsI TTSAA 7 cut(s) 62, 180, 290, 890, 1191, 1313, 1385
AjnI CCWGG 4 cut(s) 546, 736, 876, 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 4 cut(s) 77, 812, 920, 1013
AluI AGCT 4 cut(s) 77, 812, 920, 1013
AlwI GGATC 2 cut(s) 145, 1067
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 3 cut(s) 424, 1325, 1456
ApeKI GCWGC 6 cut(s) 647, 659, 791, 800, 809, 1061
ApoI RAATTY 2 cut(s) 378, 1308
ArsI GACNNNNNNTTYG 4 cut(s) 965, 997, 1343, 1375
Asp700I GAANNNNTTC 2 cut(s) 57, 593
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 2 cut(s) 1300, 1456
AsuHPI GGTGA 6 cut(s) 601, 977, 1027, 1082, 1244, 1257
AvaII GGWCC 1 cut(s) 1300
BanI GGYRCC 1 cut(s) 872
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 6 cut(s) 634, 671, 787, 803, 821, 1073
BccI CCATC 2 cut(s) 128, 1046
BciT130I CCWGG 4 cut(s) 548, 738, 878, 1242
BciVI GTATCC 1 cut(s) 920
BfaI CTAG 5 cut(s) 572, 651, 1079, 1229, 1295
BfmI CTRYAG 1 cut(s) 1008
BfuAI ACCTGC 1 cut(s) 653
BfuI GTATCC 1 cut(s) 920
BglII AGATCT 1 cut(s) 1274
BisI GCNGC 6 cut(s) 648, 660, 792, 801, 810, 1062
BlsI GCNGC 6 cut(s) 649, 661, 793, 802, 811, 1063
Bme1390I CCNGG 4 cut(s) 548, 738, 878, 1242
Bme18I GGWCC 1 cut(s) 1300
BmgT120I GGNCC 2 cut(s) 1300, 1456
BmiI GGNNCC 2 cut(s) 270, 874
BmrFI CCNGG 4 cut(s) 548, 738, 878, 1242
BmsI GCATC 4 cut(s) 410, 1048, 1073, 1346
BpiI GAAGAC 1 cut(s) 115
BpuEI CTTGAG 2 cut(s) 798, 1187
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 331, 876, 944
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 422
Bse1I ACTGG 1 cut(s) 1328
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 4 cut(s) 548, 738, 878, 1242
BseDI CCNNGG 3 cut(s) 331, 876, 944
BseGI GGATG 6 cut(s) 256, 343, 859, 1088, 1250, 1337
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 2 cut(s) 415, 422
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 1328
BseXI GCAGC 6 cut(s) 634, 671, 787, 803, 821, 1073
BsgI GTGCAG 2 cut(s) 292, 301
Bsh1236I CGCG 2 cut(s) 585, 645
BshFI GGCC 3 cut(s) 426, 1327, 1458
BshNI GGYRCC 1 cut(s) 872
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 1 cut(s) 1461
BslI CCNNNNNNNGG 2 cut(s) 415, 422
BsmFI GGGAC 1 cut(s) 1461
BsmI GAATGC 1 cut(s) 1377
BsnI GGCC 3 cut(s) 426, 1327, 1458
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 4 cut(s) 137, 676, 1072, 1274
Bsp19I CCATGG 1 cut(s) 944
BspACI CCGC 3 cut(s) 89, 569, 1173
BspANI GGCC 3 cut(s) 426, 1327, 1458
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 2 cut(s) 585, 645
BspLI GGNNCC 2 cut(s) 270, 874
BspMI ACCTGC 1 cut(s) 653
BspPI GGATC 2 cut(s) 145, 1067
BspT107I GGYRCC 1 cut(s) 872
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 1328
BssECI CCNNGG 3 cut(s) 331, 876, 944
BssMI GATC 4 cut(s) 137, 676, 1072, 1274
BssT1I CCWWGG 2 cut(s) 331, 944
Bst2UI CCWGG 4 cut(s) 548, 738, 878, 1242
Bst4CI ACNGT 5 cut(s) 260, 491, 932, 1291, 1464
BstAPI GCANNNNNTGC 5 cut(s) 315, 647, 797, 800, 1000
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 5 cut(s) 28, 643, 657, 762, 1494
BstDEI CTNAG 3 cut(s) 383, 432, 828
BstDSI CCRYGG 1 cut(s) 944
BstF5I GGATG 6 cut(s) 256, 343, 859, 1088, 1250, 1337
BstFNI CGCG 2 cut(s) 585, 645
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 4 cut(s) 140, 679, 1075, 1277
BstMBI GATC 4 cut(s) 137, 676, 1072, 1274
BstNI CCWGG 4 cut(s) 548, 738, 878, 1242
BstNSI RCATGY 3 cut(s) 998, 1129, 1496
BstSCI CCNGG 4 cut(s) 546, 736, 876, 1240
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 2 cut(s) 585, 645
BstV1I GCAGC 6 cut(s) 634, 671, 787, 803, 821, 1073
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 1274
BstXI CCANNNNNNTGG 1 cut(s) 1437
BstYI RGATCY 1 cut(s) 1274
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 3 cut(s) 426, 1327, 1458
BtgI CCRYGG 1 cut(s) 944
BtsCI GGATG 6 cut(s) 256, 343, 859, 1088, 1250, 1337
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 3 cut(s) 30, 164, 265
BveI ACCTGC 1 cut(s) 653
Cac8I GCNNGC 5 cut(s) 28, 643, 657, 762, 1494
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 2 cut(s) 1300, 1456
CseI GACGC 1 cut(s) 471
Csp6I GTAC 4 cut(s) 226, 705, 909, 1177
CviAII CATG 9 cut(s) 23, 389, 746, 863, 945, 995, 1126, 1493, 1499
CviQI GTAC 4 cut(s) 226, 705, 909, 1177
DdeI CTNAG 3 cut(s) 383, 432, 828
DpnI GATC 4 cut(s) 139, 678, 1074, 1276
DpnII GATC 4 cut(s) 137, 676, 1072, 1274
DraI TTTAAA 1 cut(s) 1476
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 331, 944
Eco147I AGGCCT 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 1300
Eco57I CTGAAG 4 cut(s) 580, 669, 942, 1194
EcoO109I RGGNCCY 2 cut(s) 1300, 1456
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 4 cut(s) 546, 736, 876, 1240
EcoT14I CCWWGG 2 cut(s) 331, 944
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 331, 944
FaeI CATG 9 cut(s) 26, 392, 749, 866, 948, 998, 1129, 1496, 1502
FaqI GGGAC 1 cut(s) 1461
FatI CATG 9 cut(s) 22, 388, 745, 862, 944, 994, 1125, 1492, 1498
FauI CCCGC 2 cut(s) 576, 1166
FauNDI CATATG 1 cut(s) 622
Fnu4HI GCNGC 6 cut(s) 648, 660, 792, 801, 810, 1062
FokI GGATG 6 cut(s) 263, 350, 866, 1095, 1257, 1324
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 648, 660, 792, 801, 810, 1062
FspBI CTAG 5 cut(s) 572, 651, 1079, 1229, 1295
GlaI GCGC 1 cut(s) 646
GluI GCNGC 6 cut(s) 648, 660, 792, 801, 810, 1062
HaeIII GGCC 3 cut(s) 426, 1327, 1458
HapII CCGG 1 cut(s) 416
HgaI GACGC 1 cut(s) 471
HhaI GCGC 1 cut(s) 647
Hin1II CATG 9 cut(s) 26, 392, 749, 866, 948, 998, 1129, 1496, 1502
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 2 cut(s) 328, 1131
HindII GTYRAC 2 cut(s) 328, 1131
HinfI GANTC 7 cut(s) 67, 371, 419, 440, 476, 949, 1426
HpaII CCGG 1 cut(s) 416
HphI GGTGA 6 cut(s) 601, 977, 1027, 1082, 1244, 1257
Hpy166II GTNNAC 3 cut(s) 226, 328, 1131
Hpy188I TCNGA 3 cut(s) 445, 535, 599
Hpy188III TCNNGA 7 cut(s) 375, 699, 1028, 1166, 1272, 1278, 1295
Hpy8I GTNNAC 3 cut(s) 226, 328, 1131
HpyAV CCTTC 3 cut(s) 917, 1278, 1447
HpyCH4III ACNGT 5 cut(s) 260, 491, 932, 1291, 1464
HpyCH4IV ACGT 2 cut(s) 703, 1186
HpyF3I CTNAG 3 cut(s) 383, 432, 828
HpySE526I ACGT 2 cut(s) 703, 1186
Hsp92II CATG 9 cut(s) 26, 392, 749, 866, 948, 998, 1129, 1496, 1502
HspAI GCGC 1 cut(s) 645
Kzo9I GATC 4 cut(s) 137, 676, 1072, 1274
LmnI GCTCC 3 cut(s) 268, 917, 1030
Lsp1109I GCAGC 6 cut(s) 634, 671, 787, 803, 821, 1073
LweI GCATC 4 cut(s) 410, 1048, 1073, 1346
MaeI CTAG 5 cut(s) 572, 651, 1079, 1229, 1295
MaeII ACGT 2 cut(s) 703, 1186
MaeIII GTNAC 6 cut(s) 411, 468, 1093, 1316, 1359, 1423
MalI GATC 4 cut(s) 139, 678, 1074, 1276
MboI GATC 4 cut(s) 137, 676, 1072, 1274
MboII GAAGA 3 cut(s) 115, 601, 1191
MfeI CAATTG 2 cut(s) 343, 690
MflI RGATCY 1 cut(s) 1274
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 9 cut(s) 343, 378, 563, 690, 840, 1215, 1250, 1308, 1352
MluI ACGCGT 1 cut(s) 583
MlyI GAGTC 3 cut(s) 61, 958, 1420
MmeI TCCRAC 1 cut(s) 1365
MroXI GAANNNNTTC 2 cut(s) 57, 593
MseI TTAA 3 cut(s) 1218, 1305, 1475
MslI CAYNNNNRTG 3 cut(s) 786, 867, 1497
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 4 cut(s) 548, 738, 878, 1242
MunI CAATTG 2 cut(s) 343, 690
Mva1269I GAATGC 1 cut(s) 1377
MvaI CCWGG 4 cut(s) 548, 738, 878, 1242
MvnI CGCG 2 cut(s) 585, 645
NcoI CCATGG 1 cut(s) 944
NdeI CATATG 1 cut(s) 622
NdeII GATC 4 cut(s) 137, 676, 1072, 1274
NlaIII CATG 9 cut(s) 26, 392, 749, 866, 948, 998, 1129, 1496, 1502
NlaIV GGNNCC 2 cut(s) 270, 874
NmuCI GTSAC 3 cut(s) 468, 1359, 1423
NspI RCATGY 3 cut(s) 998, 1129, 1496
PaeI GCATGC 1 cut(s) 1496
PceI AGGCCT 1 cut(s) 426
PciI ACATGT 1 cut(s) 1125
PctI GAATGC 1 cut(s) 1377
PdmI GAANNNNTTC 2 cut(s) 57, 593
PfeI GAWTC 4 cut(s) 371, 419, 440, 476
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 6 cut(s) 649, 661, 793, 802, 811, 1063
PleI GAGTC 3 cut(s) 61, 957, 1420
PpsI GAGTC 3 cut(s) 61, 957, 1420
PpuMI RGGWCCY 1 cut(s) 1300
PscI ACATGT 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 1300
Psp6I CCWGG 4 cut(s) 546, 736, 876, 1240
PspGI CCWGG 4 cut(s) 546, 736, 876, 1240
PspN4I GGNNCC 2 cut(s) 270, 874
PspPI GGNCC 2 cut(s) 1300, 1456
PspPPI RGGWCCY 1 cut(s) 1300
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 1274
RsaI GTAC 4 cut(s) 227, 706, 910, 1178
RsaNI GTAC 4 cut(s) 226, 705, 909, 1177
RseI CAYNNNNRTG 3 cut(s) 786, 867, 1497
SaqAI TTAA 3 cut(s) 1218, 1305, 1475
SatI GCNGC 6 cut(s) 648, 660, 792, 801, 810, 1062
Sau3AI GATC 4 cut(s) 137, 676, 1072, 1274
Sau96I GGNCC 2 cut(s) 1300, 1456
SchI GAGTC 3 cut(s) 61, 958, 1420
ScrFI CCNGG 4 cut(s) 548, 738, 878, 1242
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 4 cut(s) 410, 1048, 1073, 1346
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 1 cut(s) 1300
SmiMI CAYNNNNRTG 3 cut(s) 786, 867, 1497
SmlI CTYRAG 2 cut(s) 813, 1166
SmoI CTYRAG 2 cut(s) 813, 1166
SphI GCATGC 1 cut(s) 1496
Sse9I AATT 9 cut(s) 343, 378, 563, 690, 840, 1215, 1250, 1308, 1352
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 3 cut(s) 89, 569, 1173
SspI AATATT 1 cut(s) 885
SspMI CTAG 5 cut(s) 572, 651, 1079, 1229, 1295
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 4 cut(s) 546, 736, 876, 1240
StyI CCWWGG 2 cut(s) 331, 944
TaaI ACNGT 5 cut(s) 260, 491, 932, 1291, 1464
TaiI ACGT 2 cut(s) 706, 1189
TaqI TCGA 3 cut(s) 110, 140, 240
TasI AATT 9 cut(s) 343, 378, 563, 690, 840, 1215, 1250, 1308, 1352
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 4 cut(s) 371, 419, 440, 476
Tru1I TTAA 3 cut(s) 1218, 1305, 1475
Tru9I TTAA 3 cut(s) 1218, 1305, 1475
TscAI CASTG 3 cut(s) 37, 171, 265
TseFI GTSAC 3 cut(s) 468, 1359, 1423
TseI GCWGC 6 cut(s) 647, 659, 791, 800, 809, 1061
Tsp45I GTSAC 3 cut(s) 468, 1359, 1423
TspDTI ATGAA 3 cut(s) 132, 645, 848
TspGWI ACGGA 2 cut(s) 1429, 1465
TspRI CASTG 3 cut(s) 37, 171, 265
VpaK11BI GGWCC 1 cut(s) 1300
XapI RAATTY 2 cut(s) 378, 1308
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 3 cut(s) 998, 1129, 1496
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmnI GAANNNNTTC 2 cut(s) 57, 593
XspI CTAG 5 cut(s) 572, 651, 1079, 1229, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.