Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016301

Physical Location & Seq

Genomic Coordinates Forward (+)

572052 .. 574223

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTGTTCAACATTTTCCCTCGCAGCAAAGACTTACATTAGAGAGAGCAATGGAATTCGACATCGAAAATCCATGGTCACAGCAAAAAGAGCTGAAGTGATTACAGCTCCCAAGCAAAGAAGCAGACCTGTTTTTCCTGAGTTATCAATACAAGGCATTCCTATTGATGATTTACATGTACAAGAAATTGTTCAAAGGCAGTCTCAGACTTACAGCATGGACAGAGAAGGCGGCCGCAGAAAGCCACAGTTCTGTCCTAGCTTTCTTGAAGAAGCATATGAAAGGTGCAGGAACATTTGTGCAGAATATGCTAAGACATTCTATCTAGGCACTTTACTAATGACAGAGGAGCGTCAAAAGGCAATATGGGCAATCTACGTTTGGTGTAGAAGAACAGATGAACTGGTGGATGGCCCCAATTCTGTCTACATGAGCTCTGAAGTTCTTGATAGATGGGAAGAGAGGCTGCAAGACATTTTCGAAGGACGGCCTTACGACATGCTTGATGCTGCATTAACACACACAGTTTTCAGTTTCCCCTTAGACATCAAGCCTTTCAGAGACATGATCGAGGGTATGAGAATGGACACAAGAAAATGTCGCTACCAGAATTTTCAAGAGCTTTATCTTTACTGCTACTACGTGGCAGGGACGGTCGGCCTAATGAGTGTTCCTGTGATGGGAATTGCACCAGATTCTCTGATTTCTGCTCAAAGCACATATGATGCTGCACTATATCTGGGCATCGGAAATCAACTCACAAACATCCTTAGAGATGTGGGGGAAGATGCTATGAGAGGGAGAGTTTATCTTCCCCAAGATGAGCTAGCACAGTTCGGGTTAGGCGATAACGACGTTTTCTCAAGAAAGGTGACTGGTCAGTGGAGAGAGTTCATGAAAGAACAGATTACAAGAGCAAGGTTCTATTTCAACCTGGCAGAGGAGGGAGCTTCTCAGCTTGACAAGGCTAGCCGTTGGCCGGTATGGTCATCGCTACTGATTTATCGTAACATCTTGGATGCGATTGAGGATAACGATTACGATAACTTGACAAAGAGAGCATATGTAAGGAGAGCTAAGAAACTTCTCATGTTGCCTTTGGCTTACTCAAGATCTCTGTCAACAAGTAGCTTGCTCTCTCAGCAGCACAAGAACGTAAGGAGTACAAAATCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

393

Amino Acids

45.49

Weight (kDa)

8.53

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016301)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45220
malus_domestica	MD03G1007200.v1.1 MD11G1010500.v1.1
prunus_persica	Prupe.6G006800_v2.0.a1
pyrus_communis	pycom03g00730
rosa_chinensis	RchiOBHm_Chr5g0082831
rosa_laevigata	RLG00000036993
rosa_multiflora	Rmu_sc0001381.1_g000014
rosa_roxburghii	Rroxscaffold_1G00001600
rosa_rugosa	Rorug05G0480200
rosa_samantha	Rh5AG530500 Rh5BG557400 Rh5CG580400 Rh5DG565800
rosa_wichuraiana	Rw5G049810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	231, 235
AcoI	YGGCCR	2 cut(s)	232, 977
AcsI	RAATTY	2 cut(s)	54, 610
AcuI	CTGAAG	2 cut(s)	114, 459
AfaI	GTAC	2 cut(s)	180, 1165
AfiI	CCNNNNNNNGG	3 cut(s)	680, 940, 979
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	5 cut(s)	9, 194, 269, 617, 931
AjnI	CCWGG	1 cut(s)	933
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	2 cut(s)	207, 555
AoxI	GGCC	5 cut(s)	232, 412, 488, 658, 977
ApeKI	GCWGC	5 cut(s)	23, 466, 509, 728, 1144
ApoI	RAATTY	2 cut(s)	54, 610
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	883
AsuII	TTCGAA	1 cut(s)	480
AsuNHI	GCTAGC	2 cut(s)	826, 968
BanII	GRGCYC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	5 cut(s)	35, 453, 496, 715, 1156
BccI	CCATC	3 cut(s)	404, 447, 673
BceAI	ACGGC	2 cut(s)	503, 957
BciT130I	CCWGG	1 cut(s)	935
BcoDI	GTCTC	2 cut(s)	207, 555
BfaI	CTAG	4 cut(s)	258, 326, 827, 969
BglII	AGATCT	1 cut(s)	1112
BisI	GCNGC	7 cut(s)	24, 232, 235, 467, 510, 729, 1145
BlsI	GCNGC	7 cut(s)	25, 233, 236, 468, 511, 730, 1146
Bme1390I	CCNGG	1 cut(s)	935
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	935
BmsI	GCATC	5 cut(s)	496, 715, 753, 778, 1009
BmtI	GCTAGC	2 cut(s)	830, 972
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	847, 1093
BsaAI	YACGTR	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	3 cut(s)	680, 940, 979
Bse118I	RCCGGY	1 cut(s)	979
Bse1I	ACTGG	2 cut(s)	408, 880
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	935
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	415, 765, 1024
BseLI	CCNNNNNNNGG	3 cut(s)	680, 940, 979
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	4 cut(s)	129, 218, 968, 1154
BseNI	ACTGG	2 cut(s)	408, 880
BseRI	GAGGAG	2 cut(s)	362, 956
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	5 cut(s)	35, 453, 496, 715, 1156
BsgI	GTGCAG	3 cut(s)	307, 321, 714
Bsh1285I	CGRYCG	2 cut(s)	235, 657
BshFI	GGCC	5 cut(s)	234, 414, 490, 660, 979
BsiEI	CGRYCG	2 cut(s)	235, 657
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	3 cut(s)	680, 940, 979
BsmAI	GTCTC	2 cut(s)	207, 555
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	5 cut(s)	234, 414, 490, 660, 979
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	567, 1112
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	231, 235
BspANI	GGCC	5 cut(s)	234, 414, 490, 660, 979
BspCNI	CTCAG	4 cut(s)	130, 217, 967, 1153
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	415
BspOI	GCTAGC	2 cut(s)	830, 972
BspT104I	TTCGAA	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	979
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	408, 880
BssAI	RCCGGY	1 cut(s)	979
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	567, 1112
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	935
Bst4CI	ACNGT	4 cut(s)	249, 526, 655, 834
Bst6I	CTCTTC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	643
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	828, 970, 1133
BstDEI	CTNAG	8 cut(s)	138, 204, 312, 541, 770, 954, 1077, 1140
BstDSI	CCRYGG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	938
BstF5I	GGATG	3 cut(s)	415, 765, 1024
BstKTI	GATC	2 cut(s)	570, 1115
BstMAI	GTCTC	2 cut(s)	207, 555
BstMBI	GATC	2 cut(s)	567, 1112
BstMCI	CGRYCG	2 cut(s)	235, 657
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 308, 368, 1141
BstNI	CCWGG	1 cut(s)	935
BstNSI	RCATGY	2 cut(s)	179, 502
BstSCI	CCNGG	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	35, 453, 496, 715, 1156
BstX2I	RGATCY	1 cut(s)	1112
BstYI	RGATCY	1 cut(s)	1112
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	5 cut(s)	234, 414, 490, 660, 979
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	975
BtsCI	GGATG	3 cut(s)	415, 765, 1024
BtsIMutI	CAGTG	1 cut(s)	887
Cac8I	GCNNGC	3 cut(s)	828, 970, 1133
CciI	TCATGA	1 cut(s)	894
CciNI	GCGGCCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	979
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	179, 1164
CviAII	CATG	8 cut(s)	73, 176, 217, 430, 499, 565, 895, 1090
CviQI	GTAC	2 cut(s)	179, 1164
DdeI	CTNAG	8 cut(s)	138, 204, 312, 541, 770, 954, 1077, 1140
DpnI	GATC	2 cut(s)	569, 1114
DpnII	GATC	2 cut(s)	567, 1112
EaeI	YGGCCR	2 cut(s)	232, 977
EagI	CGGCCG	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	437
Eco52I	CGGCCG	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	114, 459
EcoICRI	GAGCTC	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	933
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	8 cut(s)	76, 179, 220, 433, 502, 568, 898, 1093
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	8 cut(s)	72, 175, 216, 429, 498, 564, 894, 1089
FauNDI	CATATG	3 cut(s)	277, 721, 1063
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	7 cut(s)	24, 232, 235, 467, 510, 729, 1145
FokI	GGATG	3 cut(s)	422, 752, 1031
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	7 cut(s)	24, 232, 235, 467, 510, 729, 1145
FspBI	CTAG	4 cut(s)	258, 326, 827, 969
GluI	GCNGC	7 cut(s)	24, 232, 235, 467, 510, 729, 1145
HaeIII	GGCC	5 cut(s)	234, 414, 490, 660, 979
HapII	CCGG	1 cut(s)	980
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	8 cut(s)	76, 179, 220, 433, 502, 568, 898, 1093
HincII	GTYRAC	1 cut(s)	1122
HindII	GTYRAC	1 cut(s)	1122
HinfI	GANTC	1 cut(s)	695
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	2 cut(s)	427, 1122
Hpy188I	TCNGA	5 cut(s)	207, 439, 560, 702, 749
Hpy188III	TCNNGA	7 cut(s)	137, 266, 446, 617, 864, 895, 1110
Hpy8I	GTNNAC	2 cut(s)	427, 1122
Hpy99I	CGWCG	1 cut(s)	857
HpyAV	CCTTC	2 cut(s)	221, 476
HpyCH4III	ACNGT	4 cut(s)	249, 526, 655, 834
HpyCH4IV	ACGT	4 cut(s)	378, 642, 855, 1155
HpyCH4V	TGCA	6 cut(s)	288, 302, 469, 512, 689, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 308, 368, 1141
HpyF3I	CTNAG	8 cut(s)	138, 204, 312, 541, 770, 954, 1077, 1140
HpySE526I	ACGT	4 cut(s)	378, 642, 855, 1155
Hsp92II	CATG	8 cut(s)	76, 179, 220, 433, 502, 568, 898, 1093
Kzo9I	GATC	2 cut(s)	567, 1112
LmnI	GCTCC	3 cut(s)	112, 349, 947
Lsp1109I	GCAGC	5 cut(s)	35, 453, 496, 715, 1156
LweI	GCATC	5 cut(s)	496, 715, 753, 778, 1009
MaeI	CTAG	4 cut(s)	258, 326, 827, 969
MaeII	ACGT	4 cut(s)	378, 642, 855, 1155
MaeIII	GTNAC	3 cut(s)	76, 871, 1007
MalI	GATC	2 cut(s)	569, 1114
MboI	GATC	2 cut(s)	567, 1112
MboII	GAAGA	5 cut(s)	281, 402, 470, 797, 803
MflI	RGATCY	1 cut(s)	1112
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	5 cut(s)	54, 186, 418, 610, 684
MnlI	CCTC	8 cut(s)	29, 340, 456, 565, 791, 934, 937, 1021
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	515
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	1 cut(s)	935
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	935
MwoI	GCNNNNNNNGC	4 cut(s)	89, 308, 368, 1141
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	3 cut(s)	277, 721, 1063
NdeII	GATC	2 cut(s)	567, 1112
NheI	GCTAGC	2 cut(s)	826, 968
NlaIII	CATG	8 cut(s)	76, 179, 220, 433, 502, 568, 898, 1093
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	76, 871
NotI	GCGGCCGC	1 cut(s)	232
NspI	RCATGY	2 cut(s)	179, 502
NspV	TTCGAA	1 cut(s)	480
PagI	TCATGA	1 cut(s)	894
PciI	ACATGT	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PctI	GAATGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	695
PkrI	GCNGC	7 cut(s)	25, 233, 236, 468, 511, 730, 1146
Ppu21I	YACGTR	1 cut(s)	643
PscI	ACATGT	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	933
PspGI	CCWGG	1 cut(s)	933
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	1112
RsaI	GTAC	2 cut(s)	180, 1165
RsaNI	GTAC	2 cut(s)	179, 1164
SacI	GAGCTC	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	7 cut(s)	24, 232, 235, 467, 510, 729, 1145
Sau3AI	GATC	2 cut(s)	567, 1112
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	935
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	5 cut(s)	496, 715, 753, 778, 1009
SfuI	TTCGAA	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	862, 1108
SmoI	CTYRAG	2 cut(s)	862, 1108
Sse9I	AATT	5 cut(s)	54, 186, 418, 610, 684
SsiI	CCGC	2 cut(s)	231, 235
SspMI	CTAG	4 cut(s)	258, 326, 827, 969
SstI	GAGCTC	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	933
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	249, 526, 655, 834
TaiI	ACGT	4 cut(s)	381, 645, 858, 1158
TaqI	TCGA	4 cut(s)	58, 64, 480, 570
TasI	AATT	5 cut(s)	54, 186, 418, 610, 684
TatI	WGTACW	2 cut(s)	178, 1163
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	887
TseFI	GTSAC	2 cut(s)	76, 871
TseI	GCWGC	5 cut(s)	23, 466, 509, 728, 1144
Tsp45I	GTSAC	2 cut(s)	76, 871
TspDTI	ATGAA	4 cut(s)	294, 414, 883, 911
TspRI	CASTG	1 cut(s)	887
XagI	CCTNNNNNAGG	1 cut(s)	938
XapI	RAATTY	2 cut(s)	54, 610
XceI	RCATGY	2 cut(s)	179, 502
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	4 cut(s)	258, 326, 827, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.