pycom03g00730

Phytoene synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016301
Physical Location & Seq
Forward (+)
590944 .. 593305
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00730.4

Sequence Viewer

Length: 1152 bp
ATGTGTTCTTCAATTTCCTTCGCAGGAAAGACTTACATCGGAGAGAGCAATGGAAGAATTCCGCGTCAAAAATCTATGGTCACAGCAGCAAAAGCTCAAGTGATTACAGCTCCCAAGCAAAGAAGCAGGCCTGTTTTTCGGGAGCTTTCAATTCAAGGCATTCCTCTTGCTGATTTACACGTGCAAGAAATCGTTCAAAGGCAGTCTCAGACTCGTAGTGTGGACGGGGAAGGCGGCCGCCGCAGGCCGCAGTTCAACCCTAGCTTTCTTGAAGAAGCATATGAGAGGTGCAAGAACCTTTGTGCAGAATATGCCAAGACATTCTATCTAGGCACTTTACTTATGACAGAAGAGCGTCAAAAGGCGATATGGGCAATCTATGTTTGGTGCAGGAGGACAGATGAACTGGTGGATGGTCCAAATTCCGGTTACATGAGCTCGGAAGTTCTTGATCGATGGGAACAGAGACTGGAAGATATTTTCGAAGGACGACCTTATGACATGCTTGATGCTGCGCTGACTCATACCGTTTTCAATTTTCCCTTGGACATCAAGCCTTTTCGAGACATGATTGACGGTATGCGAATGGACACGCAAAAATGCCGATACCAAAATTTTCAAGAGCTCTATCTTTACTGCTACTATGTGGCAGGGACGGTCGGCCTAATGAGTGTTCCTGTAATGGGAATTGCACCAGATTCTCGGATTTCTGCTCAAAGTACATATGATTCTGCATTATATTTGGGCATAGGAAACCAACTCACAAACATCCTTAGAGATGTTGGAGAGGATGCAATGAGAGGGAGAGTTTATCTTCCCCAAGACGAGCTTGCGCAGTTTGGGTTGTGCGATAACGATGTTTTTTCAAGAAAAGTGACTGATCCATGGAGAGCATTCATGAAAGAACAGATTACAAGAGCAAGGTTTTATTTCAACCTAGCAGAAGAAGGAGCTTCTCAGCTTGATAAGGCTAGCCGTTGGCCGGTATGGTCATCGTTACTGATATATCGAAACATACTGGACGCGATCGAAGAAAACGATTACGATAACTTGACAAAGAGAGCGTACGTAAAGAGAGCCAAGAAACTTCTCATGCTGCCTTTGGCATACACAAATCGATCTCTATCAACACATAATTTGATGTCCCAATAA

Protein Analysis

384

Amino Acids

44.16

Weight (kDa)

8.05

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016301)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45220
malus_domestica MD03G1007200.v1.1 MD11G1010500.v1.1
prunus_persica Prupe.6G006800_v2.0.a1
pyrus_communis pycom03g00730
rosa_chinensis RchiOBHm_Chr5g0082831
rosa_laevigata RLG00000036993
rosa_multiflora Rmu_sc0001381.1_g000014
rosa_roxburghii Rroxscaffold_1G00001600
rosa_rugosa Rorug05G0480200
rosa_samantha Rh5AG530500 Rh5BG557400 Rh5CG580400 Rh5DG565800
rosa_wichuraiana Rw5G049810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 834
AccII CGCG 2 cut(s) 64, 1025
AciI CCGC 5 cut(s) 62, 234, 238, 241, 248
AclWI GGATC 1 cut(s) 875
AcoI YGGCCR 2 cut(s) 235, 980
AcsI RAATTY 3 cut(s) 57, 421, 613
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 2 cut(s) 721, 1067
AfiI CCNNNNNNNGG 3 cut(s) 425, 683, 982
AflIII ACRYGT 1 cut(s) 178
AluBI AGCT 9 cut(s) 95, 110, 145, 264, 438, 625, 829, 953, 961
AluI AGCT 9 cut(s) 95, 110, 145, 264, 438, 625, 829, 953, 961
Alw21I GWGCWC 2 cut(s) 440, 627
Alw26I GTCTC 3 cut(s) 210, 460, 558
AlwI GGATC 1 cut(s) 875
AlwNI CAGNNNCTG 1 cut(s) 469
AoxI GGCC 5 cut(s) 128, 235, 245, 661, 980
ApeKI GCWGC 3 cut(s) 86, 512, 1096
ApoI RAATTY 3 cut(s) 57, 421, 613
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 2 cut(s) 517, 835
AspS9I GGNCC 1 cut(s) 416
AsuII TTCGAA 1 cut(s) 483
AsuNHI GCTAGC 1 cut(s) 971
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 440, 627
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 440, 627
BbvI GCAGC 3 cut(s) 98, 499, 1083
BccI CCATC 2 cut(s) 407, 450
BceAI ACGGC 1 cut(s) 960
BcoDI GTCTC 3 cut(s) 210, 460, 558
BfaI CTAG 4 cut(s) 261, 329, 938, 972
BisI GCNGC 7 cut(s) 87, 235, 238, 241, 248, 513, 1097
BlsI GCNGC 7 cut(s) 88, 236, 239, 242, 249, 514, 1098
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmsI GCATC 2 cut(s) 499, 781
BmtI GCTAGC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 81
Bsa29I ATCGAT 2 cut(s) 454, 1117
BsaAI YACGTR 2 cut(s) 181, 1069
BsaBI GATNNNNATC 1 cut(s) 1123
BsaJI CCNNGG 2 cut(s) 543, 884
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 683, 982
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 3 cut(s) 411, 474, 1023
Bse3DI GCAATG 2 cut(s) 55, 801
Bse8I GATNNNNATC 1 cut(s) 1123
BseCI ATCGAT 2 cut(s) 454, 1117
BseDI CCNNGG 2 cut(s) 543, 884
BseGI GGATG 3 cut(s) 418, 768, 796
BseJI GATNNNNATC 1 cut(s) 1123
BseLI CCNNNNNNNGG 3 cut(s) 425, 683, 982
BseMI GCAATG 2 cut(s) 55, 801
BseMII CTCAG 2 cut(s) 221, 971
BseNI ACTGG 3 cut(s) 411, 474, 1023
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 98, 499, 1083
BsgI GTGCAG 2 cut(s) 324, 409
Bsh1236I CGCG 2 cut(s) 64, 1025
Bsh1285I CGRYCG 3 cut(s) 238, 660, 1029
BshFI GGCC 5 cut(s) 130, 237, 247, 663, 982
BshVI ATCGAT 2 cut(s) 454, 1117
BsiEI CGRYCG 3 cut(s) 238, 660, 1029
BsiHKAI GWGCWC 2 cut(s) 440, 627
BsiSI CCGG 2 cut(s) 426, 983
BsiWI CGTACG 1 cut(s) 1065
BslFI GGGAC 2 cut(s) 667, 1129
BslI CCNNNNNNNGG 3 cut(s) 425, 683, 982
BsmAI GTCTC 3 cut(s) 210, 460, 558
BsmFI GGGAC 2 cut(s) 667, 1129
BsmI GAATGC 2 cut(s) 159, 893
BsnI GGCC 5 cut(s) 130, 237, 247, 663, 982
Bsp119I TTCGAA 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 440, 627
Bsp143I GATC 4 cut(s) 451, 880, 1026, 1118
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 5 cut(s) 62, 234, 238, 241, 248
BspANI GGCC 5 cut(s) 130, 237, 247, 663, 982
BspCNI CTCAG 2 cut(s) 220, 970
BspDI ATCGAT 2 cut(s) 454, 1117
BspFNI CGCG 2 cut(s) 64, 1025
BspHI TCATGA 1 cut(s) 897
BspOI GCTAGC 1 cut(s) 975
BspPI GGATC 1 cut(s) 875
BspQI GCTCTTC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 483
BsrDI GCAATG 2 cut(s) 55, 801
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 3 cut(s) 411, 474, 1023
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 2 cut(s) 543, 884
BssMI GATC 4 cut(s) 451, 880, 1026, 1118
BssT1I CCWWGG 2 cut(s) 543, 884
Bst4CI ACNGT 3 cut(s) 529, 578, 658
Bst6I CTCTTC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 311
BstBAI YACGTR 2 cut(s) 181, 1069
BstBI TTCGAA 1 cut(s) 483
BstC8I GCNNGC 4 cut(s) 128, 245, 831, 973
BstDEI CTNAG 3 cut(s) 207, 773, 957
BstDSI CCRYGG 1 cut(s) 884
BstF5I GGATG 3 cut(s) 418, 768, 796
BstFNI CGCG 2 cut(s) 64, 1025
BstHHI GCGC 2 cut(s) 517, 835
BstKTI GATC 4 cut(s) 454, 883, 1029, 1121
BstMAI GTCTC 3 cut(s) 210, 460, 558
BstMBI GATC 4 cut(s) 451, 880, 1026, 1118
BstMCI CGRYCG 3 cut(s) 238, 660, 1029
BstMWI GCNNNNNNNGC 4 cut(s) 92, 240, 311, 371
BstNSI RCATGY 1 cut(s) 505
BstSNI TACGTA 1 cut(s) 1069
BstUI CGCG 2 cut(s) 64, 1025
BstV1I GCAGC 3 cut(s) 98, 499, 1083
BstZI CGGCCG 1 cut(s) 235
Bsu15I ATCGAT 2 cut(s) 454, 1117
BsuRI GGCC 5 cut(s) 130, 237, 247, 663, 982
BsuTUI ATCGAT 2 cut(s) 454, 1117
BtgI CCRYGG 1 cut(s) 884
BtsCI GGATG 3 cut(s) 418, 768, 796
Cac8I GCNNGC 4 cut(s) 128, 245, 831, 973
CaiI CAGNNNCTG 1 cut(s) 469
CciI TCATGA 1 cut(s) 897
CciNI GCGGCCGC 1 cut(s) 235
CfoI GCGC 2 cut(s) 517, 835
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 1 cut(s) 416
ClaI ATCGAT 2 cut(s) 454, 1117
CseI GACGC 3 cut(s) 53, 344, 1031
Csp6I GTAC 2 cut(s) 720, 1066
CviAII CATG 6 cut(s) 433, 502, 568, 885, 898, 1093
CviQI GTAC 2 cut(s) 720, 1066
DdeI CTNAG 3 cut(s) 207, 773, 957
DpnI GATC 4 cut(s) 453, 882, 1028, 1120
DpnII GATC 4 cut(s) 451, 880, 1026, 1118
EaeI YGGCCR 2 cut(s) 235, 980
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Ecl136II GAGCTC 2 cut(s) 438, 625
EclXI CGGCCG 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 1069
Eco130I CCWWGG 2 cut(s) 543, 884
Eco147I AGGCCT 1 cut(s) 130
Eco24I GRGCYC 2 cut(s) 440, 627
Eco47I GGWCC 1 cut(s) 416
Eco52I CGGCCG 1 cut(s) 235
Eco53kI GAGCTC 2 cut(s) 438, 625
Eco72I CACGTG 1 cut(s) 181
EcoICRI GAGCTC 2 cut(s) 438, 625
EcoRI GAATTC 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 543, 884
EcoT38I GRGCYC 2 cut(s) 440, 627
ErhI CCWWGG 2 cut(s) 543, 884
FaeI CATG 6 cut(s) 436, 505, 571, 888, 901, 1096
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 667, 1129
FatI CATG 6 cut(s) 432, 501, 567, 884, 897, 1092
FauNDI CATATG 2 cut(s) 280, 724
Fnu4HI GCNGC 7 cut(s) 87, 235, 238, 241, 248, 513, 1097
FokI GGATG 3 cut(s) 425, 755, 803
FriOI GRGCYC 2 cut(s) 440, 627
Fsp4HI GCNGC 7 cut(s) 87, 235, 238, 241, 248, 513, 1097
FspBI CTAG 4 cut(s) 261, 329, 938, 972
FspI TGCGCA 1 cut(s) 834
GlaI GCGC 2 cut(s) 516, 834
GluI GCNGC 7 cut(s) 87, 235, 238, 241, 248, 513, 1097
HaeIII GGCC 5 cut(s) 130, 237, 247, 663, 982
HapII CCGG 2 cut(s) 426, 983
HgaI GACGC 3 cut(s) 53, 344, 1031
HhaI GCGC 2 cut(s) 517, 835
Hin1II CATG 6 cut(s) 436, 505, 571, 888, 901, 1096
Hin6I GCGC 2 cut(s) 515, 833
HinP1I GCGC 2 cut(s) 515, 833
HinfI GANTC 4 cut(s) 211, 520, 698, 728
HpaII CCGG 2 cut(s) 426, 983
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 41, 210, 442, 705
Hpy188III TCNNGA 7 cut(s) 140, 269, 449, 563, 620, 867, 898
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 28, 224, 479, 941
HpyCH4III ACNGT 3 cut(s) 529, 578, 658
HpyCH4IV ACGT 2 cut(s) 180, 1068
HpyCH4V TGCA 7 cut(s) 184, 291, 305, 390, 692, 734, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 240, 311, 371
HpyF3I CTNAG 3 cut(s) 207, 773, 957
HpySE526I ACGT 2 cut(s) 180, 1068
Hsp92II CATG 6 cut(s) 436, 505, 571, 888, 901, 1096
HspAI GCGC 2 cut(s) 515, 833
Kzo9I GATC 4 cut(s) 451, 880, 1026, 1118
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 3 cut(s) 115, 142, 950
Lsp1109I GCAGC 3 cut(s) 98, 499, 1083
LweI GCATC 2 cut(s) 499, 781
MaeI CTAG 4 cut(s) 261, 329, 938, 972
MaeII ACGT 2 cut(s) 180, 1068
MaeIII GTNAC 4 cut(s) 79, 428, 874, 996
MalI GATC 4 cut(s) 453, 882, 1028, 1120
MboI GATC 4 cut(s) 451, 880, 1026, 1118
MboII GAAGA 7 cut(s) 66, 284, 362, 485, 806, 956, 1043
MhlI GDGCHC 2 cut(s) 440, 627
MluCI AATT 8 cut(s) 12, 57, 150, 421, 535, 613, 687, 1135
MlyI GAGTC 2 cut(s) 205, 514
MmeI TCCRAC 1 cut(s) 763
MnlI CCTC 5 cut(s) 174, 279, 387, 781, 794
MroXI GAANNNNTTC 1 cut(s) 192
MspI CCGG 2 cut(s) 426, 983
Mva1269I GAATGC 2 cut(s) 159, 893
MvnI CGCG 2 cut(s) 64, 1025
MwoI GCNNNNNNNGC 4 cut(s) 92, 240, 311, 371
NcoI CCATGG 1 cut(s) 884
NdeI CATATG 2 cut(s) 280, 724
NdeII GATC 4 cut(s) 451, 880, 1026, 1118
NheI GCTAGC 1 cut(s) 971
NlaIII CATG 6 cut(s) 436, 505, 571, 888, 901, 1096
NmuCI GTSAC 2 cut(s) 79, 874
NotI GCGGCCGC 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 834
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 1 cut(s) 483
PagI TCATGA 1 cut(s) 897
PceI AGGCCT 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PctI GAATGC 2 cut(s) 159, 893
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 698, 728
Pfl23II CGTACG 1 cut(s) 1065
PkrI GCNGC 7 cut(s) 88, 236, 239, 242, 249, 514, 1098
Ple19I CGATCG 1 cut(s) 1029
PleI GAGTC 2 cut(s) 205, 514
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 2 cut(s) 205, 514
Ppu21I YACGTR 2 cut(s) 181, 1069
Psp124BI GAGCTC 2 cut(s) 440, 627
PspCI CACGTG 1 cut(s) 181
PspLI CGTACG 1 cut(s) 1065
PspPI GGNCC 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 469
PvuI CGATCG 1 cut(s) 1029
RsaI GTAC 2 cut(s) 721, 1067
RsaNI GTAC 2 cut(s) 720, 1066
SacI GAGCTC 2 cut(s) 440, 627
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 7 cut(s) 87, 235, 238, 241, 248, 513, 1097
Sau3AI GATC 4 cut(s) 451, 880, 1026, 1118
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 205, 514
SduI GDGCHC 2 cut(s) 440, 627
SfaNI GCATC 2 cut(s) 499, 781
SfuI TTCGAA 1 cut(s) 483
SinI GGWCC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 1069
Sse9I AATT 8 cut(s) 12, 57, 150, 421, 535, 613, 687, 1135
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 5 cut(s) 62, 234, 238, 241, 248
SspMI CTAG 4 cut(s) 261, 329, 938, 972
SstI GAGCTC 2 cut(s) 440, 627
StuI AGGCCT 1 cut(s) 130
StyI CCWWGG 2 cut(s) 543, 884
TaaI ACNGT 3 cut(s) 529, 578, 658
TaiI ACGT 2 cut(s) 183, 1071
TaqI TCGA 6 cut(s) 454, 483, 562, 1009, 1029, 1117
TasI AATT 8 cut(s) 12, 57, 150, 421, 535, 613, 687, 1135
TatI WGTACW 1 cut(s) 719
TauI GCSGC 4 cut(s) 237, 240, 243, 250
TfiI GAWTC 2 cut(s) 698, 728
TseFI GTSAC 2 cut(s) 79, 874
TseI GCWGC 3 cut(s) 86, 512, 1096
Tsp45I GTSAC 2 cut(s) 79, 874
TspDTI ATGAA 3 cut(s) 417, 886, 914
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 3 cut(s) 57, 421, 613
XceI RCATGY 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 4 cut(s) 261, 329, 938, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.