Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001381.1

Orthogroup ID

OG0016301

Physical Location & Seq

Genomic Coordinates Forward (+)

42772 .. 44690

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001381.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgagttctacattttcacttgcaccaaaaccttacattagagagaacaatggaaaactcctgcccccaaaatctatgctcacaacaattagagctgaagtgattacagctcccaagcaaagaagcacgcggatttttcctgaactgtcaatacaaggcattcctgttgctgatttgcatgtacaagaaattgttcaaaggcaatccaagacttacaacacagccaatggaggtactagccgaaagccacagttcgatccatgctttcttgaagaagcgtatgaaaggtgcaggaccatctgtgcagaatatgccaagacattctatctaggcactttgctaatgacagaggagcgtcaaaaggcaatatgggcaatctatgtttggtgcagaagaacagatgaactggttgatggccccaattctgggcacatggactctgaagttcttgatagatgggaagagagactagaagacattttcgaaggacggccttatgacatgcttgatgctgcattgactcatactgttctcaacttccccttagacattaagggtatgcgaatggacacaagaaaatgccgatatcagaattttcaagagctttatctctattgctactatgtggctggaactgttggcctaatgagtgttcctgtaatgggaattgcaccagattctctgatttctgctcaaagtacatatgatgctgcactctacttgggtatagggaatcaactcacaaacatacttagagatgtcggggaggatactgcgagaggtagagtttatcttccccaagatgagctggcacagtttgggttatccgacgacgatgttttttcaagaaaggtcactgatcaatggagagagttcatgaaagaacagattaccagagcgagattctatttcaacctggcagaggagggtgcttctcaacttgaaaaggatagccgttggccggtatggtcatcgttgctgatatatcgaaacatcttggatgcaattgaggaaaataattacgataacttgacaaagagagcatatgtaggcagagctaagaaacttctcatgttgcctttggcttacacaaaatcccttaatacacatggtctgatactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

374

Amino Acids

43.04

Weight (kDa)

5.78

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016301)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45220
malus_domestica	MD03G1007200.v1.1 MD11G1010500.v1.1
prunus_persica	Prupe.6G006800_v2.0.a1
pyrus_communis	pycom03g00730
rosa_chinensis	RchiOBHm_Chr5g0082831
rosa_laevigata	RLG00000036993
rosa_multiflora	Rmu_sc0001381.1_g000014
rosa_roxburghii	Rroxscaffold_1G00001600
rosa_rugosa	Rorug05G0480200
rosa_samantha	Rh5AG530500 Rh5BG557400 Rh5CG580400 Rh5DG565800
rosa_wichuraiana	Rw5G049810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	2 cut(s)	117, 462
AfaI	GTAC	3 cut(s)	183, 235, 700
AfiI	CCNNNNNNNGG	5 cut(s)	425, 426, 662, 922, 961
AgsI	TTSAA	6 cut(s)	197, 272, 599, 846, 913, 944
AjnI	CCWGG	1 cut(s)	915
AluBI	AGCT	5 cut(s)	95, 110, 604, 808, 1058
AluI	AGCT	5 cut(s)	95, 110, 604, 808, 1058
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	4 cut(s)	415, 491, 640, 959
ApeKI	GCWGC	2 cut(s)	512, 710
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	294, 416
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	499, 697
BccI	CCATC	3 cut(s)	305, 407, 450
BceAI	ACGGC	2 cut(s)	506, 939
BciT130I	CCWGG	1 cut(s)	917
BciVI	GTATCC	1 cut(s)	763
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	3 cut(s)	237, 329, 470
BfuI	GTATCC	1 cut(s)	763
BisI	GCNGC	2 cut(s)	513, 711
BlsI	GCNGC	2 cut(s)	514, 712
Bme1390I	CCNGG	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	294, 416
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	3 cut(s)	499, 697, 991
BpiI	GAAGAC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	5 cut(s)	425, 426, 662, 922, 961
Bse118I	RCCGGY	1 cut(s)	961
Bse1I	ACTGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	917
BseGI	GGATG	1 cut(s)	1006
BseLI	CCNNNNNNNGG	5 cut(s)	425, 426, 662, 922, 961
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	365, 938
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	499, 697
BsgI	GTGCAG	4 cut(s)	310, 324, 409, 696
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	4 cut(s)	417, 493, 642, 961
BsiSI	CCGG	1 cut(s)	962
BslI	CCNNNNNNNGG	5 cut(s)	425, 426, 662, 922, 961
BsmAI	GTCTC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	4 cut(s)	417, 493, 642, 961
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	256, 859
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	4 cut(s)	417, 493, 642, 961
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	961
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	961
BssMI	GATC	2 cut(s)	256, 859
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	5 cut(s)	147, 252, 529, 637, 816
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	128, 810
BstDEI	CTNAG	3 cut(s)	544, 752, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	1 cut(s)	1006
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	259, 862
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	2 cut(s)	256, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 371
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	2 cut(s)	182, 505
BstSCI	CCNGG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	499, 697
BstV2I	GAAGAC	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	4 cut(s)	417, 493, 642, 961
BtsCI	GGATG	1 cut(s)	1006
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	2 cut(s)	128, 810
CciI	TCATGA	1 cut(s)	876
Cfr10I	RCCGGY	1 cut(s)	961
Cfr13I	GGNCC	2 cut(s)	294, 416
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	182, 234, 699
CviAII	CATG	7 cut(s)	179, 261, 433, 502, 877, 1072, 1109
CviQI	GTAC	3 cut(s)	182, 234, 699
DdeI	CTNAG	3 cut(s)	544, 752, 1059
DpnI	GATC	2 cut(s)	258, 861
DpnII	GATC	2 cut(s)	256, 859
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	117, 462
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	587
FaeI	CATG	7 cut(s)	182, 264, 436, 505, 880, 1075, 1112
FatI	CATG	7 cut(s)	178, 260, 432, 501, 876, 1071, 1108
FauNDI	CATATG	2 cut(s)	703, 1045
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	513, 711
FokI	GGATG	1 cut(s)	1013
Fsp4HI	GCNGC	2 cut(s)	513, 711
FspBI	CTAG	3 cut(s)	237, 329, 470
GluI	GCNGC	2 cut(s)	513, 711
HaeIII	GGCC	4 cut(s)	417, 493, 642, 961
HapII	CCGG	1 cut(s)	962
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	7 cut(s)	182, 264, 436, 505, 880, 1075, 1112
HinfI	GANTC	5 cut(s)	437, 520, 677, 733, 903
HpaII	CCGG	1 cut(s)	962
Hpy188I	TCNGA	5 cut(s)	442, 591, 684, 829, 1116
Hpy188III	TCNNGA	6 cut(s)	140, 269, 449, 599, 846, 877
Hpy99I	CGWCG	2 cut(s)	833, 836
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	5 cut(s)	147, 252, 529, 637, 816
HpyCH4V	TGCA	9 cut(s)	23, 178, 291, 305, 390, 515, 671, 713, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 371
HpyF3I	CTNAG	3 cut(s)	544, 752, 1059
Hsp92II	CATG	7 cut(s)	182, 264, 436, 505, 880, 1075, 1112
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	256, 859
LmnI	GCTCC	2 cut(s)	115, 352
Lsp1109I	GCAGC	2 cut(s)	499, 697
LweI	GCATC	3 cut(s)	499, 697, 991
MaeI	CTAG	3 cut(s)	237, 329, 470
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	2 cut(s)	258, 861
MboI	GATC	2 cut(s)	256, 859
MboII	GAAGA	5 cut(s)	284, 405, 473, 485, 785
MfeI	CAATTG	1 cut(s)	1005
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	7 cut(s)	87, 189, 421, 592, 666, 1005, 1018
MlyI	GAGTC	2 cut(s)	431, 514
MmeI	TCCRAC	1 cut(s)	852
MnlI	CCTC	7 cut(s)	224, 343, 760, 773, 916, 919, 1003
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	2 cut(s)	552, 1101
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	1 cut(s)	1005
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	917
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	311, 371
NdeI	CATATG	2 cut(s)	703, 1045
NdeII	GATC	2 cut(s)	256, 859
NlaIII	CATG	7 cut(s)	182, 264, 436, 505, 880, 1075, 1112
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	2 cut(s)	182, 505
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	1 cut(s)	876
PctI	GAATGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	677, 733, 903
PkrI	GCNGC	2 cut(s)	514, 712
PleI	GAGTC	2 cut(s)	431, 514
PpsI	GAGTC	2 cut(s)	431, 514
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	294, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
RsaI	GTAC	3 cut(s)	183, 235, 700
RsaNI	GTAC	3 cut(s)	182, 234, 699
SaqAI	TTAA	2 cut(s)	552, 1101
SatI	GCNGC	2 cut(s)	513, 711
Sau3AI	GATC	2 cut(s)	256, 859
Sau96I	GGNCC	2 cut(s)	294, 416
SchI	GAGTC	2 cut(s)	431, 514
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	499, 697, 991
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	294
Sse9I	AATT	7 cut(s)	87, 189, 421, 592, 666, 1005, 1018
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	3 cut(s)	237, 329, 470
StyD4I	CCNGG	1 cut(s)	915
TaaI	ACNGT	5 cut(s)	147, 252, 529, 637, 816
TaqI	TCGA	3 cut(s)	255, 483, 988
TasI	AATT	7 cut(s)	87, 189, 421, 592, 666, 1005, 1018
TatI	WGTACW	2 cut(s)	181, 698
TfiI	GAWTC	3 cut(s)	677, 733, 903
Tru1I	TTAA	2 cut(s)	552, 1101
Tru9I	TTAA	2 cut(s)	552, 1101
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	2 cut(s)	512, 710
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	4 cut(s)	297, 417, 865, 893
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	2 cut(s)	182, 505
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	3 cut(s)	237, 329, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.