Prupe.6G024600_v2.0.a1

Cleavage site for pathogenic type III effector avirulence factor Avr

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008210
Physical Location & Seq
Forward (+)
1980829 .. 1984139
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G024600.2

Sequence Viewer

Length: 330 bp
ATGAAGAAGGGTTTTGTTGTAATTTCCTTGTCCAAAACAAGGATTTCTGTAAGAACTAAAAAGCTTTCTTCTATTTGGGTTTTTATGTCCTGGGAGAAGCAGGAAAAGGGTAGGCCACTCCCTAAATTTGGTGAATGGGATGTCAATGATCCTGCTTCAGCTGAGGGGTTTACTGTGATCTTCAACAAGGCTAGGGATGAGAAGAAGACAGGTGGAAAACCTGAGTCACCAGGAAAGGCCGATCCTAATATAAGGCATGGAGTTGAGCCCGGCAGGCCTCCATCTAAAAAATGGTTTTGCTGCATTCATCAACCACCAGCCGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

110

Amino Acids

12.27

Weight (kDa)

9.85

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 143, 236
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 39, 128
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 2 cut(s) 89, 229
AluBI AGCT 2 cut(s) 64, 161
AluI AGCT 2 cut(s) 64, 161
AlwI GGATC 2 cut(s) 143, 236
AoxI GGCC 3 cut(s) 113, 237, 275
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 143, 219
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 287
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 2 cut(s) 91, 231
BcnI CCSGG 1 cut(s) 270
BfaI CTAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 274
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 3 cut(s) 91, 231, 270
BmrFI CCNGG 3 cut(s) 91, 231, 270
BpiI GAAGAC 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 128
BseBI CCWGG 2 cut(s) 91, 231
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 145, 202
BseLI CCNNNNNNNGG 2 cut(s) 39, 128
BseMII CTCAG 2 cut(s) 153, 213
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 3 cut(s) 115, 239, 277
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 39, 128
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 3 cut(s) 115, 239, 277
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 148, 177, 241
BspANI GGCC 3 cut(s) 115, 239, 277
BspCNI CTCAG 2 cut(s) 154, 214
BspPI GGATC 2 cut(s) 143, 236
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 148, 177, 241
Bst2UI CCWGG 2 cut(s) 91, 231
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 162, 222
BstF5I GGATG 2 cut(s) 145, 202
BstKTI GATC 3 cut(s) 151, 180, 244
BstMBI GATC 3 cut(s) 148, 177, 241
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNI CCWGG 2 cut(s) 91, 231
BstSCI CCNGG 3 cut(s) 89, 229, 268
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 3 cut(s) 115, 239, 277
BtsCI GGATG 2 cut(s) 145, 202
Cac8I GCNNGC 1 cut(s) 275
CviAII CATG 1 cut(s) 257
CviJI RGCY 8 cut(s) 64, 115, 161, 191, 239, 268, 277, 320
CviKI_1 RGCY 8 cut(s) 64, 115, 161, 191, 239, 268, 277, 320
DdeI CTNAG 2 cut(s) 162, 222
DpnI GATC 3 cut(s) 150, 179, 243
DpnII GATC 3 cut(s) 148, 177, 241
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 89, 229
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 86, 251, 258
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 152, 209
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 3 cut(s) 115, 239, 277
HapII CCGG 1 cut(s) 270
Hin1II CATG 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 224, 323
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 143, 219
Hpy166II GTNNAC 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 162, 222
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 3 cut(s) 148, 177, 241
Lsp1109I GCAGC 1 cut(s) 287
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 225
MalI GATC 3 cut(s) 150, 179, 243
MboI GATC 3 cut(s) 148, 177, 241
MboII GAAGA 5 cut(s) 16, 60, 172, 214, 217
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 2 cut(s) 21, 125
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 2 cut(s) 157, 288
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 3 cut(s) 91, 231, 270
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 2 cut(s) 91, 231
MwoI GCNNNNNNNGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 148, 177, 241
NlaIII CATG 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 225
PceI AGGCCT 1 cut(s) 277
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 89, 229
PspGI CCWGG 2 cut(s) 89, 229
PvuII CAGCTG 1 cut(s) 161
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 3 cut(s) 148, 177, 241
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 91, 231, 270
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 66, 163, 214, 223
Sse9I AATT 2 cut(s) 21, 125
SseBI AGGCCT 1 cut(s) 277
SspMI CTAG 1 cut(s) 192
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 3 cut(s) 89, 229, 268
TaaI ACNGT 1 cut(s) 175
TasI AATT 2 cut(s) 21, 125
TfiI GAWTC 1 cut(s) 323
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 17, 296
XapI RAATTY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.