Prupe.6G093400_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018121
Physical Location & Seq
Forward (+)
6441976 .. 6443194
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G093400.1

Sequence Viewer

Length: 912 bp
ATGAAAAACTTTCGAGAGGAAGATCGAGAATATGATGCAGTAAGGGATGAGCATCAAGTGCTGTCAGAAGACACGAAACAAGGAGTAGTGCATGGTTTTGATGATAGTAAAGGTAAAGAAGTAGCACTACGAAGTCTAAATTGTGAGAACTACCAAGATCCAGATCGAAGTCGAATATGCAATGTATGTGGTAAAAGATTTGGGAGTGGACAAGCTTTGGGAGGTCACATAAGTGTCCACTTTGAACCTCGTCTAGGTCCCAAGAAGATGAACAACAAGTTTAAGGTCACCAAGCAACACCAATTACAATATTATCCTTCTTTGGATAATAAATTCTCATGCCATATTTGCAAAAAGATTTTCCCATCAAGGAAATCCTTGTATGGCCACATGGGATCCCATAGTCGAAGAGTCAGGTCTCCTTCTTTTTCTTCTTCATCATCATCAACATCATCTTCAGCTGAGTGTAATGATCTTGATCTTAAAGAGCAAGATTGTGACCGAGTAAAGTTCTTACCAGGCTGGGCTAAGGAAGATAGGGGAGACATGAAGATAGCTAACCAAACACCTAATTATAACAATGATTTTGCAAGAAAGTACAACAAGTTCCCCTCATCAAAGAGATTGAAATTCTTAGATGGCCATACATGCAATATTTGCTACAAGAAGTTCCCAACGGGGCAGGCTCTTGGAGGCCACAAGAGGGCTCACTACTTCGATGGAGCACAACCAGTGCTAGAAGCTCCACCACCAGCTACAGTTAAAGTAGCATCGACCGACGATCATGATGATGGTGAGACCATAGATCCTGTAGATTCCTCGCCATTAATGCAACTGGCTGAACAAGCATTGCATCTTGCAAGTCGGAGAATACTAGACTTGGATCTCAACGAACCTCCCAAGGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

304

Amino Acids

34.28

Weight (kDa)

8.28

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018121)

Species Orthologous Gene IDs
prunus_persica Prupe.6G093400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0270981
rosa_laevigata RLG00000013756
rosa_multiflora Rmu_sc0007952.1_g000001
rosa_roxburghii Rroxscaffold_7G00197460
rosa_rugosa Rorug06G0057600
rosa_samantha Rh6AG177200 Rh6BG180600 Rh6CG176600 Rh6DG168800
rosa_wichuraiana Rw6G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AclWI GGATC 5 cut(s) 152, 390, 403, 800, 891
AcoI YGGCCR 2 cut(s) 385, 640
AcsI RAATTY 2 cut(s) 332, 629
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 2 cut(s) 254, 703
AgsI TTSAA 2 cut(s) 245, 628
AjnI CCWGG 1 cut(s) 517
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 5 cut(s) 215, 461, 557, 743, 755
AluI AGCT 5 cut(s) 215, 461, 557, 743, 755
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 3 cut(s) 423, 537, 791
AlwI GGATC 5 cut(s) 152, 390, 403, 800, 891
AoxI GGCC 3 cut(s) 385, 640, 694
ApoI RAATTY 2 cut(s) 332, 629
AseI ATTAAT 1 cut(s) 827
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 280, 806
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 2 cut(s) 387, 642
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 709
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 727
BccI CCATC 4 cut(s) 373, 632, 713, 785
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 3 cut(s) 423, 537, 791
BfaI CTAG 3 cut(s) 254, 737, 875
BfmI CTRYAG 2 cut(s) 756, 810
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 259, 397
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 4 cut(s) 25, 61, 779, 862
BpiI GAAGAC 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 528
BsaBI GATNNNNATC 3 cut(s) 51, 162, 477
BsaI GGTCTC 2 cut(s) 423, 791
BsaJI CCNNGG 1 cut(s) 900
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 703
Bse1I ACTGG 2 cut(s) 731, 840
Bse3DI GCAATG 2 cut(s) 187, 848
Bse8I GATNNNNATC 3 cut(s) 51, 162, 477
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 3 cut(s) 51, 162, 477
BseLI CCNNNNNNNGG 2 cut(s) 254, 703
BseMI GCAATG 2 cut(s) 187, 848
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 731, 840
BseYI CCCAGC 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 777
BshFI GGCC 3 cut(s) 387, 642, 696
BsiEI CGRYCG 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 727
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 254, 703
BsmAI GTCTC 3 cut(s) 423, 537, 791
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 3 cut(s) 387, 642, 696
Bso31I GGTCTC 2 cut(s) 423, 791
Bsp1286I GDGCHC 2 cut(s) 709, 727
Bsp143I GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
BspANI GGCC 3 cut(s) 387, 642, 696
BspCNI CTCAG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 259, 397
BspPI GGATC 5 cut(s) 152, 390, 403, 800, 891
BspTNI GGTCTC 2 cut(s) 423, 791
BsrDI GCAATG 2 cut(s) 187, 848
BsrI ACTGG 2 cut(s) 731, 840
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
BssT1I CCWWGG 1 cut(s) 900
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 1 cut(s) 403
BstAPI GCANNNNNTGC 2 cut(s) 58, 657
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 3 cut(s) 462, 528, 634
BstEII GGTNACC 1 cut(s) 286
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 9 cut(s) 25, 160, 166, 398, 475, 481, 784, 808, 886
BstMAI GTCTC 3 cut(s) 423, 537, 791
BstMBI GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
BstMCI CGRYCG 1 cut(s) 777
BstMWI GCNNNNNNNGC 6 cut(s) 58, 348, 648, 657, 829, 845
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 651
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 2 cut(s) 756, 810
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 4 cut(s) 157, 395, 805, 883
BstYI RGATCY 4 cut(s) 157, 395, 805, 883
BsuRI GGCC 3 cut(s) 387, 642, 696
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 1 cut(s) 684
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 6 cut(s) 92, 339, 391, 547, 648, 785
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 3 cut(s) 462, 528, 634
DpnI GATC 9 cut(s) 24, 159, 165, 397, 474, 480, 783, 807, 885
DpnII GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
EaeI YGGCCR 2 cut(s) 385, 640
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 900
Eco24I GRGCYC 1 cut(s) 709
Eco31I GGTCTC 2 cut(s) 423, 791
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 441
Eco91I GGTNACC 1 cut(s) 286
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 6 cut(s) 95, 342, 394, 550, 651, 788
FaqI GGGAC 1 cut(s) 243
FatI CATG 6 cut(s) 91, 338, 390, 546, 647, 784
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 709
FspBI CTAG 3 cut(s) 254, 737, 875
GsaI CCCAGC 1 cut(s) 526
HaeIII GGCC 3 cut(s) 387, 642, 696
Hin1II CATG 6 cut(s) 95, 342, 394, 550, 651, 788
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 411, 815
HphI GGTGA 2 cut(s) 280, 806
Hpy166II GTNNAC 2 cut(s) 209, 238
Hpy188I TCNGA 2 cut(s) 67, 867
Hpy188III TCNNGA 5 cut(s) 14, 26, 161, 476, 785
Hpy8I GTNNAC 2 cut(s) 209, 238
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 2 cut(s) 327, 432
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4V TGCA 9 cut(s) 38, 91, 180, 351, 590, 651, 832, 853, 860
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 348, 648, 657, 829, 845
HpyF3I CTNAG 3 cut(s) 462, 528, 634
Hsp92II CATG 6 cut(s) 95, 342, 394, 550, 651, 788
Kzo9I GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
LmnI GCTCC 2 cut(s) 722, 748
LweI GCATC 4 cut(s) 25, 61, 779, 862
MaeI CTAG 3 cut(s) 254, 737, 875
MaeIII GTNAC 3 cut(s) 224, 286, 497
MalI GATC 9 cut(s) 24, 159, 165, 397, 474, 480, 783, 807, 885
MboI GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
MboII GAAGA 9 cut(s) 32, 80, 277, 420, 423, 426, 447, 545, 562
MflI RGATCY 4 cut(s) 157, 395, 805, 883
MhlI GDGCHC 2 cut(s) 709, 727
MlsI TGGCCA 2 cut(s) 387, 642
MluCI AATT 5 cut(s) 139, 302, 332, 571, 629
MluNI TGGCCA 2 cut(s) 387, 642
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 845
MnlI CCTC 9 cut(s) 10, 215, 258, 622, 686, 696, 829, 898, 906
Mox20I TGGCCA 2 cut(s) 387, 642
MscI TGGCCA 2 cut(s) 387, 642
MseI TTAA 4 cut(s) 282, 483, 762, 827
MslI CAYNNNNRTG 2 cut(s) 231, 789
Msp20I TGGCCA 2 cut(s) 387, 642
MspA1I CMGCKG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 6 cut(s) 58, 348, 648, 657, 829, 845
NdeII GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
NlaIII CATG 6 cut(s) 95, 342, 394, 550, 651, 788
NlaIV GGNNCC 2 cut(s) 259, 397
NmuCI GTSAC 3 cut(s) 224, 286, 497
NspI RCATGY 1 cut(s) 651
OliI CACNNNNGTG 1 cut(s) 231
PagI TCATGA 1 cut(s) 784
PfeI GAWTC 1 cut(s) 815
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 827
PsiI TTATAA 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 259, 397
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 590, 622
PsuI RGATCY 4 cut(s) 157, 395, 805, 883
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 2 cut(s) 231, 789
SaqAI TTAA 4 cut(s) 282, 483, 762, 827
Sau3AI GATC 9 cut(s) 22, 157, 163, 395, 472, 478, 781, 805, 883
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 2 cut(s) 709, 727
SfaNI GCATC 4 cut(s) 25, 61, 779, 862
SfcI CTRYAG 2 cut(s) 756, 810
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 231, 789
Sse9I AATT 5 cut(s) 139, 302, 332, 571, 629
SspI AATATT 2 cut(s) 311, 655
SspMI CTAG 3 cut(s) 254, 737, 875
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 1 cut(s) 760
TaqI TCGA 7 cut(s) 13, 25, 166, 172, 406, 717, 773
TaqII GACCGA 2 cut(s) 516, 791
TasI AATT 5 cut(s) 139, 302, 332, 571, 629
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 4 cut(s) 282, 483, 762, 827
Tru9I TTAA 4 cut(s) 282, 483, 762, 827
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 3 cut(s) 224, 286, 497
Tsp45I GTSAC 3 cut(s) 224, 286, 497
TspDTI ATGAA 4 cut(s) 17, 284, 426, 563
TspRI CASTG 1 cut(s) 738
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 1 cut(s) 827
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 2 cut(s) 332, 629
XceI RCATGY 1 cut(s) 651
XspI CTAG 3 cut(s) 254, 737, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.