Rh6BG180600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018121
Physical Location & Seq
Forward (+)
31006061 .. 31007385
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG180600.1

Sequence Viewer

Length: 795 bp
ATGAAAAGCTTTCAAGAGATCGAGAATGACTTCCATGAAGATCAAGATGATCGAAGTAGGAGGCATCATAAATTACAAAATAGTAGGGATCATGTTTGTAAGGTATGTGGCAAGAGATTCGAAACTGGAAACGGTTTAGGAGGTCACAAAAGAATTCACAATCTTCTTCTTCCCAATAAGAAGATCAACAAGTTTAAGGCAAACGAGAGAGTATACCATCCTTCTTCCCGAGATTACTTGAAGGATGTCAGACGGCTTCAAGCTCTGTCTGTTAGTCCTTCTCAATCTTCTTCCTCCTCTACATCCTCTTGGTGCGAATCATCATCCTCCGATCTTACAGAGTCAGATAGTGATCTAGAAAAGTTCTTACCAATCTGGGGCAGGAAAGATGTCAGAGGCAGGAGTAGCACTTGCACAAGTAGTACAACTACTCTAATTCCTAACCAAACAGTAACTAATAAACCCAGGGAGGCAGCTAAAATTAAAACAGATGAGACTAGTTGGAGTGATAAGAACATGAAGCCAAAGAAGATGGTGATGAGGTCAAATTTGGAGAAAAGTAGAAAACATGTATGTGAGATTTGCTATAAGGAGTTTCCAACGGGGCAGGCTCTCGGTGGTCACAAGAGTTCTCACTACTACTATCCAGGTTCAACAGCAGCAGCAACATCAATTAGGGAAGTTCCTGGGCTTGATCAAGTAGTATCCAATGAAGATGAAGAAGCAAGTAGGCCTACCATAAGTCGTGAAACTTTCGAGTTTGATCTCAATGAAATTCCTTCTGAAGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

264

Amino Acids

30.08

Weight (kDa)

8.63

Isoelectric Point (pI)

66.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 31 - 53 5.5e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 190 - 212 1.4e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018121)

Species Orthologous Gene IDs
prunus_persica Prupe.6G093400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0270981
rosa_laevigata RLG00000013756
rosa_multiflora Rmu_sc0007952.1_g000001
rosa_roxburghii Rroxscaffold_7G00197460
rosa_rugosa Rorug06G0057600
rosa_samantha Rh6AG177200 Rh6BG180600 Rh6CG176600 Rh6DG168800
rosa_wichuraiana Rw6G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 3 cut(s) 153, 547, 774
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 4 cut(s) 14, 241, 260, 654
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 3 cut(s) 464, 646, 685
AluBI AGCT 3 cut(s) 9, 263, 476
AluI AGCT 3 cut(s) 9, 263, 476
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 3 cut(s) 473, 659, 662
ApoI RAATTY 3 cut(s) 153, 547, 774
Asp700I GAANNNNTTC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 547
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 228
BbvI GCAGC 3 cut(s) 485, 671, 674
BccI CCATC 2 cut(s) 225, 526
BceAI ACGGC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 3 cut(s) 466, 648, 687
BciVI GTATCC 1 cut(s) 715
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 2 cut(s) 356, 498
BfuI GTATCC 1 cut(s) 715
BisI GCNGC 3 cut(s) 474, 660, 663
BlsI GCNGC 3 cut(s) 475, 661, 664
Bme1390I CCNGG 3 cut(s) 466, 648, 687
BmeT110I CYCGRG 1 cut(s) 228
BmrFI CCNGG 3 cut(s) 466, 648, 687
BmsI GCATC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 464, 465, 686
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 3 cut(s) 466, 648, 687
BseDI CCNNGG 3 cut(s) 464, 465, 686
BseGI GGATG 4 cut(s) 217, 250, 302, 323
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 3 cut(s) 485, 671, 674
BshFI GGCC 1 cut(s) 733
BsiHKCI CYCGRG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 1 cut(s) 733
BsoBI CYCGRG 1 cut(s) 228
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
BspANI GGCC 1 cut(s) 733
BspPI GGATC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 464, 465, 686
BssMI GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
BssNAI GTATAC 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 466, 648, 687
Bst4CI ACNGT 2 cut(s) 134, 451
Bst6I CTCTTC 1 cut(s) 780
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 609
BstF5I GGATG 4 cut(s) 217, 250, 302, 323
BstKTI GATC 9 cut(s) 21, 43, 52, 91, 186, 334, 355, 697, 766
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNI CCWGG 3 cut(s) 466, 648, 687
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 3 cut(s) 464, 646, 685
BstV1I GCAGC 3 cut(s) 485, 671, 674
BstZ17I GTATAC 1 cut(s) 214
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 1 cut(s) 733
BtsCI GGATG 4 cut(s) 217, 250, 302, 323
Cac8I GCNNGC 1 cut(s) 609
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 35, 92, 517, 569
CviJI RGCY 8 cut(s) 9, 256, 263, 476, 523, 611, 691, 733
CviKI_1 RGCY 8 cut(s) 9, 256, 263, 476, 523, 611, 691, 733
CviQI GTAC 1 cut(s) 423
DpnI GATC 9 cut(s) 20, 42, 51, 90, 185, 333, 354, 696, 765
DpnII GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
Eco147I AGGCCT 1 cut(s) 733
Eco88I CYCGRG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 3 cut(s) 464, 646, 685
FaeI CATG 4 cut(s) 38, 95, 520, 572
FatI CATG 4 cut(s) 34, 91, 516, 568
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 474, 660, 663
FokI GGATG 4 cut(s) 204, 257, 289, 310
Fsp4HI GCNGC 3 cut(s) 474, 660, 663
FspBI CTAG 2 cut(s) 356, 498
GluI GCNGC 3 cut(s) 474, 660, 663
HaeIII GGCC 1 cut(s) 733
Hin1II CATG 4 cut(s) 38, 95, 520, 572
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 117, 317, 341
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 5 cut(s) 251, 331, 346, 395, 784
Hpy188III TCNNGA 6 cut(s) 14, 22, 44, 228, 356, 746
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 4 cut(s) 231, 235, 288, 789
HpyCH4III ACNGT 2 cut(s) 134, 451
HpyCH4V TGCA 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 38, 95, 520, 572
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
Lsp1109I GCAGC 3 cut(s) 485, 671, 674
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 356, 498
MaeIII GTNAC 3 cut(s) 143, 451, 620
MalI GATC 9 cut(s) 20, 42, 51, 90, 185, 333, 354, 696, 765
MboI GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
MluCI AATT 7 cut(s) 71, 153, 435, 480, 547, 672, 774
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 482, 623
MnlI CCTC 9 cut(s) 54, 134, 304, 307, 316, 337, 389, 463, 534
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 195, 483
MslI CAYNNNNRTG 1 cut(s) 573
MspR9I CCNGG 3 cut(s) 466, 648, 687
MvaI CCWGG 3 cut(s) 466, 648, 687
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeII GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
NlaIII CATG 4 cut(s) 38, 95, 520, 572
NmuCI GTSAC 2 cut(s) 143, 620
NspI RCATGY 1 cut(s) 572
NspV TTCGAA 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 733
PciI ACATGT 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 117, 317
PkrI GCNGC 3 cut(s) 475, 661, 664
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PscI ACATGT 1 cut(s) 568
Psp6I CCWGG 3 cut(s) 464, 646, 685
PspGI CCWGG 3 cut(s) 464, 646, 685
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 2 cut(s) 195, 483
SatI GCNGC 3 cut(s) 474, 660, 663
Sau3AI GATC 9 cut(s) 18, 40, 49, 88, 183, 331, 352, 694, 763
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 466, 648, 687
SetI ASST 7 cut(s) 11, 105, 145, 265, 478, 545, 652
SfaNI GCATC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 573
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 7 cut(s) 71, 153, 435, 480, 547, 672, 774
SseBI AGGCCT 1 cut(s) 733
SspMI CTAG 2 cut(s) 356, 498
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 3 cut(s) 464, 646, 685
TaaI ACNGT 2 cut(s) 134, 451
TaqI TCGA 4 cut(s) 21, 52, 120, 756
TasI AATT 7 cut(s) 71, 153, 435, 480, 547, 672, 774
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 2 cut(s) 117, 317
Tru1I TTAA 2 cut(s) 195, 483
Tru9I TTAA 2 cut(s) 195, 483
TseFI GTSAC 2 cut(s) 143, 620
TseI GCWGC 3 cut(s) 473, 659, 662
Tsp45I GTSAC 2 cut(s) 143, 620
TspDTI ATGAA 6 cut(s) 17, 51, 533, 726, 732, 786
XapI RAATTY 3 cut(s) 153, 547, 774
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 356, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.