RLG00000013756

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018121
Physical Location & Seq
Reverse (-)
40424499 .. 40425639
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013756

Sequence Viewer

Length: 804 bp
ATGAAAAGCTTTCAAGAGATTGAGAATGACTTCCATGAAGATCAAGATGATCGAAGTAGGAGGCATCATAAATTACAAAAGAGTAGTAGGGATCATGTTTGTAAGGTATGTGGCAAGAGATTCGAAACTGGAAACGGTTTAGGAGGTCACAAAAGAATTCACAATCTTCTTCTTCCCAATAAGAAGATCAACAAGTTTAAGGCAAACGAGCAAGTATACCATCCTTCTTCCCAAGACTACTTGAAGGATGCCAGACGGCTTCAAGCTCTGTCTGTTAGTCCTTCTCAATCTTCTTCCTCCTCTACATCCTCTTCTTGGTGCGAATCATCATCCTCCGATCTTACAGAGTCAGATAGTGATCTAGAAAAGTCCTTACCAATCTGGGGCAGGAAAGATGTCAGAGGCAGGAGTAGCACTTGCACACGTAGTACAACTACTCTAATTGCTAACCAAGCAGTAACTAATAAACCCAGGGAGGCAGCTAAAATTAAAAGAGATGAGACTAGTTGGACTAGTGATAAGATCGTGAAGCCAAAGAAGATGATGATGTGGTCAAATTTGGAGAAAAGTAGAAAACATGTATGTGAGATTTGCTATAAGGAGTTTCCGACGGGGCAGGCTCTTGGCGGTCACAAGAGTTCTCACTACTACTATCCAGGTTCAACAGCAGCAGCAACATCAGTACGGGAAGTTCCTGGGGTTGATCAAGTAGTATCCAATGAAGATAAAGAAGCAAGTAGGCCTACCATAAGTCGTGAAACATTCGAGTTTGATCTCAATGAAATTCCTTCTGAAGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

268

Amino Acids

30.24

Weight (kDa)

8.78

Isoelectric Point (pI)

66.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 32 - 54 5.6e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 193 - 215 1.4e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018121)

Species Orthologous Gene IDs
prunus_persica Prupe.6G093400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0270981
rosa_laevigata RLG00000013756
rosa_multiflora Rmu_sc0007952.1_g000001
rosa_roxburghii Rroxscaffold_7G00197460
rosa_rugosa Rorug06G0057600
rosa_samantha Rh6AG177200 Rh6BG180600 Rh6CG176600 Rh6DG168800
rosa_wichuraiana Rw6G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AciI CCGC 1 cut(s) 627
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 3 cut(s) 156, 556, 783
AfaI GTAC 2 cut(s) 430, 684
AfiI CCNNNNNNNGG 2 cut(s) 315, 383
AflIII ACRYGT 2 cut(s) 422, 577
AgsI TTSAA 4 cut(s) 14, 244, 263, 663
AhlI ACTAGT 2 cut(s) 503, 512
AjnI CCWGG 3 cut(s) 470, 655, 694
AluBI AGCT 3 cut(s) 9, 266, 482
AluI AGCT 3 cut(s) 9, 266, 482
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 99
AoxI GGCC 1 cut(s) 740
ApeKI GCWGC 3 cut(s) 479, 668, 671
ApoI RAATTY 3 cut(s) 156, 556, 783
Asp700I GAANNNNTTC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 123
BbvI GCAGC 3 cut(s) 491, 680, 683
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 472, 657, 696
BciVI GTATCC 1 cut(s) 724
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 1 cut(s) 494
BcuI ACTAGT 2 cut(s) 503, 512
BfaI CTAG 3 cut(s) 362, 504, 513
BfuI GTATCC 1 cut(s) 724
BisI GCNGC 3 cut(s) 480, 669, 672
BlsI GCNGC 3 cut(s) 481, 670, 673
Bme1390I CCNGG 3 cut(s) 472, 657, 696
BmrFI CCNGG 3 cut(s) 472, 657, 696
BmsI GCATC 2 cut(s) 73, 238
Bpu14I TTCGAA 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 470, 471, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 383
Bse1I ACTGG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 3 cut(s) 472, 657, 696
BseDI CCNNGG 3 cut(s) 470, 471, 695
BseGI GGATG 4 cut(s) 220, 253, 305, 329
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 315, 383
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 3 cut(s) 491, 680, 683
BshFI GGCC 1 cut(s) 742
BslI CCNNNNNNNGG 2 cut(s) 315, 383
BsmAI GTCTC 1 cut(s) 494
BsnI GGCC 1 cut(s) 742
Bsp119I TTCGAA 1 cut(s) 123
Bsp143I GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
BspACI CCGC 1 cut(s) 627
BspANI GGCC 1 cut(s) 742
BspPI GGATC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 123
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 470, 471, 695
BssMI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
BssNAI GTATAC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 217
Bst2UI CCWGG 3 cut(s) 472, 657, 696
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 316, 789
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 618
BstF5I GGATG 4 cut(s) 220, 253, 305, 329
BstKTI GATC 9 cut(s) 43, 52, 94, 189, 340, 361, 525, 706, 775
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
BstMWI GCNNNNNNNGC 2 cut(s) 411, 452
BstNI CCWGG 3 cut(s) 472, 657, 696
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 470, 655, 694
BstV1I GCAGC 3 cut(s) 491, 680, 683
BstZ17I GTATAC 1 cut(s) 217
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 1 cut(s) 742
BtsCI GGATG 4 cut(s) 220, 253, 305, 329
Cac8I GCNNGC 1 cut(s) 618
Csp6I GTAC 2 cut(s) 429, 683
CviAII CATG 3 cut(s) 35, 95, 578
CviJI RGCY 7 cut(s) 9, 259, 266, 482, 532, 620, 742
CviKI_1 RGCY 7 cut(s) 9, 259, 266, 482, 532, 620, 742
CviQI GTAC 2 cut(s) 429, 683
DpnI GATC 9 cut(s) 42, 51, 93, 188, 339, 360, 524, 705, 774
DpnII GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
Eam1104I CTCTTC 2 cut(s) 316, 789
EarI CTCTTC 2 cut(s) 316, 789
Eco147I AGGCCT 1 cut(s) 742
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 3 cut(s) 470, 655, 694
FaeI CATG 3 cut(s) 38, 98, 581
FaiI YATR 9 cut(s) 36, 69, 96, 109, 217, 579, 583, 597, 749
FatI CATG 3 cut(s) 34, 94, 577
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 480, 669, 672
FokI GGATG 4 cut(s) 207, 260, 292, 316
Fsp4HI GCNGC 3 cut(s) 480, 669, 672
FspBI CTAG 3 cut(s) 362, 504, 513
GluI GCNGC 3 cut(s) 480, 669, 672
HaeIII GGCC 1 cut(s) 742
Hin1II CATG 3 cut(s) 38, 98, 581
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 120, 323, 347
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 5 cut(s) 337, 352, 401, 609, 793
Hpy188III TCNNGA 5 cut(s) 14, 44, 362, 526, 755
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 4 cut(s) 234, 238, 291, 798
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 1 cut(s) 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 452
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 3 cut(s) 38, 98, 581
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
Lsp1109I GCAGC 3 cut(s) 491, 680, 683
LweI GCATC 2 cut(s) 73, 238
MaeI CTAG 3 cut(s) 362, 504, 513
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 146, 457, 629
MalI GATC 9 cut(s) 42, 51, 93, 188, 339, 360, 524, 705, 774
MboI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
MluCI AATT 6 cut(s) 71, 156, 441, 486, 556, 783
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 488, 632
MnlI CCTC 9 cut(s) 54, 137, 307, 310, 319, 343, 395, 469, 790
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 198, 489
MslI CAYNNNNRTG 1 cut(s) 582
MspR9I CCNGG 3 cut(s) 472, 657, 696
MvaI CCWGG 3 cut(s) 472, 657, 696
MwoI GCNNNNNNNGC 2 cut(s) 411, 452
NdeII GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
NlaIII CATG 3 cut(s) 38, 98, 581
NmuCI GTSAC 2 cut(s) 146, 629
NspI RCATGY 1 cut(s) 581
NspV TTCGAA 1 cut(s) 123
PasI CCCWGGG 1 cut(s) 471
PceI AGGCCT 1 cut(s) 742
PciI ACATGT 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 120, 323
PkrI GCNGC 3 cut(s) 481, 670, 673
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 425
PscI ACATGT 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 470, 655, 694
PspGI CCWGG 3 cut(s) 470, 655, 694
PsrI GAACNNNNNNTAC 2 cut(s) 675, 707
RsaI GTAC 2 cut(s) 430, 684
RsaNI GTAC 2 cut(s) 429, 683
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 2 cut(s) 198, 489
SatI GCNGC 3 cut(s) 480, 669, 672
Sau3AI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 522, 703, 772
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 3 cut(s) 472, 657, 696
SetI ASST 7 cut(s) 11, 108, 148, 268, 427, 484, 661
SfaNI GCATC 2 cut(s) 73, 238
SfuI TTCGAA 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 582
SpeI ACTAGT 2 cut(s) 503, 512
Sse9I AATT 6 cut(s) 71, 156, 441, 486, 556, 783
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 1 cut(s) 627
SspMI CTAG 3 cut(s) 362, 504, 513
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 3 cut(s) 470, 655, 694
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 52, 123, 765
TasI AATT 6 cut(s) 71, 156, 441, 486, 556, 783
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 2 cut(s) 120, 323
Tru1I TTAA 2 cut(s) 198, 489
Tru9I TTAA 2 cut(s) 198, 489
TseFI GTSAC 2 cut(s) 146, 629
TseI GCWGC 3 cut(s) 479, 668, 671
Tsp45I GTSAC 2 cut(s) 146, 629
TspDTI ATGAA 4 cut(s) 17, 51, 735, 795
XapI RAATTY 3 cut(s) 156, 556, 783
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 581
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 3 cut(s) 362, 504, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.