Rw6G015110

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018121
Physical Location & Seq
Forward (+)
28287475 .. 28288272
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015110.1

Sequence Viewer

Length: 798 bp
ATGAAAAGCTTTCAAGAGATCGACAATGACTTCCTTGAAGATCAAGATGATCGAAGTAGGAGGCATCATAAATTACAAAATAGTAGGGATCATGTTTGTAAGGTATGTGGCAAGAGATTCGAAACTGGAAACGGTTTAGGAGGTCACAAAAGAATTCACAATCTTCTTCTTCCCAATAAGAAGATCAACAAGTTTAAGGCAAACGAGAAAGTATACCATCCTTCTTCCCGAGATTACTTGAAGGATGTCAGACGGCTTCAAGCTCTGTCTGTTAGTCCTTCTCAGTCTTCTTCCTCCTCTACATTCTCTTCTTGGTGCGAATCATCATCCTCCAATCTTACAGAGTCAGATAGTGATCTAGAAAAGTCCTTACCAATCTGGGGCAGGAAAGAAGTCAGAGGCAGGAGTAGCACTTGCACAAGTAGTACAACTACTCTAATTGCTAACCAAACAGTAACTAATAAACCCAGGGAGGCAGCTAAAATTAAAACAGATGAGACTAGTTGGAGTGATAAGAACACGAAGCCAAAGAAGATGATGATGAGGTCAAATTTGGAGAAAAGTAGAAAACATGTATGTGAGATTTGCTATAAGGAGTTTCCAACGGGGCAGGCTCTCGGTGGTCACAAGAGTTCTCACTACTACTATCCAGGTTCAACAGCAGCAGCAACATCAATTAGGGAAGTTCCTGGGCTTGATCAAGTAGTATCCAATGAAGATGAAGAAGCAAGTAGGCCTACCATAAGTCGTGAAACATTCGAGTTTGATCTCAATGAAATTCCTTCTGAAGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

265

Amino Acids

30.09

Weight (kDa)

8.78

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 31 - 53 5.5e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 191 - 213 1.4e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018121)

Species Orthologous Gene IDs
prunus_persica Prupe.6G093400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0270981
rosa_laevigata RLG00000013756
rosa_multiflora Rmu_sc0007952.1_g000001
rosa_roxburghii Rroxscaffold_7G00197460
rosa_rugosa Rorug06G0057600
rosa_samantha Rh6AG177200 Rh6BG180600 Rh6CG176600 Rh6DG168800
rosa_wichuraiana Rw6G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 3 cut(s) 153, 550, 777
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 5 cut(s) 14, 38, 241, 260, 657
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 3 cut(s) 467, 649, 688
AluBI AGCT 3 cut(s) 9, 263, 479
AluI AGCT 3 cut(s) 9, 263, 479
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 734
ApeKI GCWGC 3 cut(s) 476, 662, 665
ApoI RAATTY 3 cut(s) 153, 550, 777
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 488, 674, 677
BccI CCATC 1 cut(s) 225
BceAI ACGGC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 3 cut(s) 469, 651, 690
BciVI GTATCC 1 cut(s) 718
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 491
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 2 cut(s) 359, 501
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 3 cut(s) 477, 663, 666
BlsI GCNGC 3 cut(s) 478, 664, 667
Bme1390I CCNGG 3 cut(s) 469, 651, 690
BmeT110I CYCGRG 1 cut(s) 228
BmrFI CCNGG 3 cut(s) 469, 651, 690
BmsI GCATC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 467, 468, 689
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 3 cut(s) 469, 651, 690
BseDI CCNNGG 3 cut(s) 467, 468, 689
BseGI GGATG 3 cut(s) 217, 250, 326
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 3 cut(s) 488, 674, 677
BshFI GGCC 1 cut(s) 736
BsiHKCI CYCGRG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 1 cut(s) 736
BsoBI CYCGRG 1 cut(s) 228
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 467, 468, 689
BssMI GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
BssNAI GTATAC 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 469, 651, 690
Bst4CI ACNGT 2 cut(s) 134, 454
Bst6I CTCTTC 2 cut(s) 313, 783
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 217, 250, 326
BstKTI GATC 8 cut(s) 21, 43, 52, 91, 186, 358, 700, 769
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNI CCWGG 3 cut(s) 469, 651, 690
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 467, 649, 688
BstV1I GCAGC 3 cut(s) 488, 674, 677
BstV2I GAAGAC 1 cut(s) 279
BstZ17I GTATAC 1 cut(s) 214
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 1 cut(s) 736
BtsCI GGATG 3 cut(s) 217, 250, 326
Cac8I GCNNGC 1 cut(s) 612
Csp6I GTAC 1 cut(s) 426
CviAII CATG 2 cut(s) 92, 572
CviJI RGCY 8 cut(s) 9, 256, 263, 479, 526, 614, 694, 736
CviKI_1 RGCY 8 cut(s) 9, 256, 263, 479, 526, 614, 694, 736
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 282
DpnI GATC 8 cut(s) 20, 42, 51, 90, 185, 357, 699, 768
DpnII GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
Eam1104I CTCTTC 2 cut(s) 313, 783
EarI CTCTTC 2 cut(s) 313, 783
Eco147I AGGCCT 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 3 cut(s) 467, 649, 688
FaeI CATG 2 cut(s) 95, 575
FaiI YATR 8 cut(s) 69, 93, 106, 214, 573, 577, 591, 743
FatI CATG 2 cut(s) 91, 571
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 477, 663, 666
FokI GGATG 3 cut(s) 204, 257, 313
Fsp4HI GCNGC 3 cut(s) 477, 663, 666
FspBI CTAG 2 cut(s) 359, 501
GluI GCNGC 3 cut(s) 477, 663, 666
HaeIII GGCC 1 cut(s) 736
Hin1II CATG 2 cut(s) 95, 575
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 117, 320, 344
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 4 cut(s) 251, 349, 398, 787
Hpy188III TCNNGA 5 cut(s) 14, 44, 228, 359, 749
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 4 cut(s) 231, 235, 288, 792
HpyCH4III ACNGT 2 cut(s) 134, 454
HpyCH4V TGCA 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 2 cut(s) 95, 575
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
Lsp1109I GCAGC 3 cut(s) 488, 674, 677
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 359, 501
MaeIII GTNAC 3 cut(s) 143, 454, 623
MalI GATC 8 cut(s) 20, 42, 51, 90, 185, 357, 699, 768
MboI GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
MluCI AATT 7 cut(s) 71, 153, 438, 483, 550, 675, 777
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 2 cut(s) 485, 626
MnlI CCTC 8 cut(s) 54, 134, 304, 307, 340, 392, 466, 537
MseI TTAA 2 cut(s) 195, 486
MslI CAYNNNNRTG 1 cut(s) 576
MspR9I CCNGG 3 cut(s) 469, 651, 690
MvaI CCWGG 3 cut(s) 469, 651, 690
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeII GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
NlaIII CATG 2 cut(s) 95, 575
NmuCI GTSAC 2 cut(s) 143, 623
NspI RCATGY 1 cut(s) 575
NspV TTCGAA 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 468
PceI AGGCCT 1 cut(s) 736
PciI ACATGT 1 cut(s) 571
PfeI GAWTC 2 cut(s) 117, 320
PkrI GCNGC 3 cut(s) 478, 664, 667
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PscI ACATGT 1 cut(s) 571
Psp6I CCWGG 3 cut(s) 467, 649, 688
PspGI CCWGG 3 cut(s) 467, 649, 688
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 2 cut(s) 195, 486
SatI GCNGC 3 cut(s) 477, 663, 666
Sau3AI GATC 8 cut(s) 18, 40, 49, 88, 183, 355, 697, 766
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 469, 651, 690
SetI ASST 7 cut(s) 11, 105, 145, 265, 481, 548, 655
SfaNI GCATC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 576
SpeI ACTAGT 1 cut(s) 500
Sse9I AATT 7 cut(s) 71, 153, 438, 483, 550, 675, 777
SseBI AGGCCT 1 cut(s) 736
SspMI CTAG 2 cut(s) 359, 501
StuI AGGCCT 1 cut(s) 736
StyD4I CCNGG 3 cut(s) 467, 649, 688
TaaI ACNGT 2 cut(s) 134, 454
TaqI TCGA 4 cut(s) 21, 52, 120, 759
TasI AATT 7 cut(s) 71, 153, 438, 483, 550, 675, 777
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 2 cut(s) 117, 320
Tru1I TTAA 2 cut(s) 195, 486
Tru9I TTAA 2 cut(s) 195, 486
TseFI GTSAC 2 cut(s) 143, 623
TseI GCWGC 3 cut(s) 476, 662, 665
Tsp45I GTSAC 2 cut(s) 143, 623
TspDTI ATGAA 4 cut(s) 17, 729, 735, 789
XapI RAATTY 3 cut(s) 153, 550, 777
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 359, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.