Rroxscaffold_7G00197460

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018121
Physical Location & Seq
Reverse (-)
41804006 .. 41804806
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197460.1

Sequence Viewer

Length: 801 bp
ATGAAAAGCTTTCAAGAGATTGAGAATGACTTCCATGAAGATCAAGATGATCGAAGTAGGATGCATCATAAATTACAAAAGAGTAGTAGGGATCATGTTTGTAAGGTATGTGGCAAGAGATTCGAAACTGGAAACGGTTTAGGAGGTCACAAAAGAATTCACAATCTTCTTCTTCCCAATAAGAAGATCAACAAGTTTAAGGCAAACGAGCAAGTATACCATCCTTCTTCCCGAGATTACTGGAAGGATGCCAGACGGCTTCAAGCTCTGTCTGTTAGTCCTTCTCAATCTTCTTCCTCCTCTACATCCTCTTCTTGGTGCGAATCATCATCCGCCGATCTTACAGAGTCAGATAGTGATCTAGAAAAGTCCTTACCAATCTGGGGCAGGAAAGATGTCAGAGGCAGGAGCAGCACTTGCACACGTAGTACAACTACTCTAATTGCTAACCAAGCAGTAACTAATAAACCCAGGGAGGCAGCTAAAATTAAAAGAGATGCGACTAGTTGGAGTGATAAGATCGTGAAGCCAAAGAAGAAGATGATGTGGTCAAATTTGGAGAAAAGTAGAAAACATGAATGTGAGATTTGCTATAAGGAGTTTCCGACGGGGCAGGCTCTCGGCGGTCACAAGAGTTCTCACTACTACTATCCAGGTTCAACAGCAGCAGCAACATCAGTACGGGAAGTTCTTGGGGTTGATCGAGTAGTATCGAATGAAGATAAAGAAACAAGTAGGCCTACCATAAGTCGTGAAACATTCGAGTTTGATCTCAATGAAATTCCTTCTGAAGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

266

Amino Acids

30.25

Weight (kDa)

9.01

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 32 - 54 5.6e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 192 - 214 6.1e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018121)

Species Orthologous Gene IDs
prunus_persica Prupe.6G093400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0270981
rosa_laevigata RLG00000013756
rosa_multiflora Rmu_sc0007952.1_g000001
rosa_roxburghii Rroxscaffold_7G00197460
rosa_rugosa Rorug06G0057600
rosa_samantha Rh6AG177200 Rh6BG180600 Rh6CG176600 Rh6DG168800
rosa_wichuraiana Rw6G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AciI CCGC 2 cut(s) 333, 624
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 3 cut(s) 156, 553, 780
AfaI GTAC 2 cut(s) 430, 681
AfiI CCNNNNNNNGG 2 cut(s) 315, 383
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 3 cut(s) 14, 263, 660
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 2 cut(s) 470, 652
AluBI AGCT 3 cut(s) 9, 266, 482
AluI AGCT 3 cut(s) 9, 266, 482
AlwI GGATC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 1 cut(s) 737
ApeKI GCWGC 4 cut(s) 411, 479, 665, 668
ApoI RAATTY 3 cut(s) 156, 553, 780
Asp700I GAANNNNTTC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 231
BbvI GCAGC 4 cut(s) 423, 491, 677, 680
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 472, 654
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 2 cut(s) 362, 504
BisI GCNGC 4 cut(s) 412, 480, 666, 669
BlsI GCNGC 4 cut(s) 413, 481, 667, 670
Bme1390I CCNGG 2 cut(s) 472, 654
BmeT110I CYCGRG 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 472, 654
BmsI GCATC 4 cut(s) 51, 73, 238, 487
Bpu14I TTCGAA 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 470, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 383
Bse1I ACTGG 2 cut(s) 133, 245
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 2 cut(s) 472, 654
BseDI CCNNGG 2 cut(s) 470, 471
BseGI GGATG 5 cut(s) 66, 220, 253, 305, 329
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 315, 383
BseNI ACTGG 2 cut(s) 133, 245
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 4 cut(s) 423, 491, 677, 680
BshFI GGCC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 315, 383
BsnI GGCC 1 cut(s) 739
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 123
Bsp143I GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
BspACI CCGC 2 cut(s) 333, 624
BspANI GGCC 1 cut(s) 739
BspPI GGATC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 123
BsrI ACTGG 2 cut(s) 133, 245
BssECI CCNNGG 2 cut(s) 470, 471
BssMI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
BssNAI GTATAC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 217
Bst2UI CCWGG 2 cut(s) 472, 654
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 316, 786
BstAPI GCANNNNNTGC 1 cut(s) 417
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 615
BstF5I GGATG 5 cut(s) 66, 220, 253, 305, 329
BstKTI GATC 9 cut(s) 43, 52, 94, 189, 340, 361, 522, 703, 772
BstMBI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
BstMWI GCNNNNNNNGC 3 cut(s) 411, 417, 452
BstNI CCWGG 2 cut(s) 472, 654
BstSCI CCNGG 2 cut(s) 470, 652
BstV1I GCAGC 4 cut(s) 423, 491, 677, 680
BstZ17I GTATAC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 739
BtsCI GGATG 5 cut(s) 66, 220, 253, 305, 329
Cac8I GCNNGC 1 cut(s) 615
Csp6I GTAC 2 cut(s) 429, 680
CviAII CATG 3 cut(s) 35, 95, 575
CviJI RGCY 7 cut(s) 9, 259, 266, 482, 529, 617, 739
CviKI_1 RGCY 7 cut(s) 9, 259, 266, 482, 529, 617, 739
CviQI GTAC 2 cut(s) 429, 680
DpnI GATC 9 cut(s) 42, 51, 93, 188, 339, 360, 521, 702, 771
DpnII GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
Eam1104I CTCTTC 2 cut(s) 316, 786
EarI CTCTTC 2 cut(s) 316, 786
EciI GGCGGA 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 739
Eco88I CYCGRG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 470, 652
EcoT22I ATGCAT 1 cut(s) 66
FaeI CATG 3 cut(s) 38, 98, 578
FaiI YATR 8 cut(s) 36, 69, 96, 109, 217, 576, 594, 746
FatI CATG 3 cut(s) 34, 94, 574
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 412, 480, 666, 669
FokI GGATG 5 cut(s) 73, 207, 260, 292, 316
Fsp4HI GCNGC 4 cut(s) 412, 480, 666, 669
FspBI CTAG 2 cut(s) 362, 504
GluI GCNGC 4 cut(s) 412, 480, 666, 669
HaeIII GGCC 1 cut(s) 739
Hin1II CATG 3 cut(s) 38, 98, 578
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 120, 323, 347
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 352, 401, 606, 790
Hpy188III TCNNGA 6 cut(s) 14, 44, 231, 362, 523, 752
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 610
HpyAV CCTTC 4 cut(s) 234, 238, 291, 795
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 64, 420
HpyF10VI GCNNNNNNNGC 3 cut(s) 411, 417, 452
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 3 cut(s) 38, 98, 578
Kzo9I GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
LmnI GCTCC 1 cut(s) 408
Lsp1109I GCAGC 4 cut(s) 423, 491, 677, 680
LweI GCATC 4 cut(s) 51, 73, 238, 487
MaeI CTAG 2 cut(s) 362, 504
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 146, 457, 626
MalI GATC 9 cut(s) 42, 51, 93, 188, 339, 360, 521, 702, 771
MboI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
MluCI AATT 6 cut(s) 71, 156, 441, 486, 553, 780
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 488, 629
MnlI CCTC 7 cut(s) 137, 307, 310, 319, 395, 469, 787
Mph1103I ATGCAT 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 198, 489
MslI CAYNNNNRTG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 472, 654
MvaI CCWGG 2 cut(s) 472, 654
MwoI GCNNNNNNNGC 3 cut(s) 411, 417, 452
NdeII GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
NlaIII CATG 3 cut(s) 38, 98, 578
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 2 cut(s) 146, 626
NsiI ATGCAT 1 cut(s) 66
NspV TTCGAA 1 cut(s) 123
PasI CCCWGGG 1 cut(s) 471
PceI AGGCCT 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 120, 323
PkrI GCNGC 4 cut(s) 413, 481, 667, 670
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 470, 652
PspGI CCWGG 2 cut(s) 470, 652
PsrI GAACNNNNNNTAC 2 cut(s) 672, 704
RsaI GTAC 2 cut(s) 430, 681
RsaNI GTAC 2 cut(s) 429, 680
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 2 cut(s) 198, 489
SatI GCNGC 4 cut(s) 412, 480, 666, 669
Sau3AI GATC 9 cut(s) 40, 49, 91, 186, 337, 358, 519, 700, 769
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 472, 654
SetI ASST 7 cut(s) 11, 108, 148, 268, 427, 484, 658
SfaNI GCATC 4 cut(s) 51, 73, 238, 487
SfuI TTCGAA 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 579
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 6 cut(s) 71, 156, 441, 486, 553, 780
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 2 cut(s) 333, 624
SspMI CTAG 2 cut(s) 362, 504
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 2 cut(s) 470, 652
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 427
TaqI TCGA 5 cut(s) 52, 123, 703, 713, 762
TasI AATT 6 cut(s) 71, 156, 441, 486, 553, 780
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 2 cut(s) 120, 323
Tru1I TTAA 2 cut(s) 198, 489
Tru9I TTAA 2 cut(s) 198, 489
TseFI GTSAC 2 cut(s) 146, 626
TseI GCWGC 4 cut(s) 411, 479, 665, 668
Tsp45I GTSAC 2 cut(s) 146, 626
TspDTI ATGAA 5 cut(s) 17, 51, 591, 732, 792
XapI RAATTY 3 cut(s) 156, 553, 780
XbaI TCTAGA 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 362, 504
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.