Prupe.6G159400_v2.0.a1

Chromatin assembly factor 1 subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
14587864 .. 14595542
7679 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G159400.1

Sequence Viewer

Length: 1662 bp
ATGAAAGGAGGCACAGTTCAGATCAACTGGCACGACACTAAGCCCGTACTAACCCTAGATTTCCACCCAACTTCTGGTACTCTCGCTACTGGTGGCGCCGATTTCGACATCAAGCTTTGGTTAATAAATTCGAGCGAAACACAGAAGAAACTCCCAGCAGCTTCATATCAAAATAGCCTTTCTTACCATAGTTCTGCTGTAAATGTCCTTCGCTTCTCTCCTTCTGGAGAACAGCTTGCCTCTGGTGCAGACGGAGGTGAGCTGATTGTATGGAAGTTGCATGCAACAGAAACTAGCACAACGTGGAAGGTCCTTAAGACATTGTCATTTCACCGCAAAGATGTGCTGGACCTCCAGTGGTCTACTGATGGTGCATTTCTCATCTCTGGGTCAGTTGATAATTCTTGCATCATATGGGATGTAAACAGAGGTTCTGTCCATCAGATTCTGGATGCCCATGCCCATTATGTTCAAGGTGTGGCATGGGACCCATTGGCCAACTACGCTGCTTCCCTAAGTTCAGATAGAACTTGTCGCATTTATGTAAAAAAAGCTCAATCAAAAGCAAAAGGTGCCGAGAAGACAAATTATGTTTGCCAGCATGTTATTTCAAAGGCCGAGCCTCCACTGTTGGATGATTCTAAGTCTGCAAAATACCATCTCTTTCATGATGAGACGTTGCCATCTTTCTTTCGAAGATTAGCATGGTCACCTGATGGATCATTTCTACTTGTTCCAGCAGGTTCCTACAAAATATCATCTGCACTGGAGACAATAAATACAGCTTATGTTTTTTCTAGAAAGGACCTTTCAAGGCCTGCTCTACAGCTCCCTGGTGCCTGCAAACCTGTTGTAGCAGTTCGTTTCTGCCCTTTGCTCTTTAGCCTGCGGGGGTCAAATCAATCTGGGTTCTTTAAGCTTCCCCATCGTATTGTTTTTGCTGTGGCCACTTTAAATTCTTTGTACATTTATGACACAGAGAGTGTTCCTCCAATTGCAATCTTTGCTGGTCTTCACTATGCAGCCATAACAGACATTGCATGGTCACCCAACGCCCAATACCTAGGATTGTCTTCTCAAGATGGTTACTGCACGTTGGTAGAATTTGAAAATGATGAACTGGGATCACCTATCTGTTCATCAGAGGAAAAGAAAGTCATGCGTGACGAGAACAAAAGCCCAGTTCAGAAGCCAGAGGACATGGTAATTGAAGCTACTAAAAATGATAGTCTTATCGCTGAAGATAATGGAAGAACTGTTGAAAGGAATCAACAAAAAGAAGCTGAAAGGAAAGAAGAGAAAGTCATGGGTGAACAGAATAAAAGGCCAGCTGAGAAGGCAGAGGACATGGTAATTGAATCTACTGCAACTGACAGTCTTGTTGCAGCAGATAATGGAAATTCAGAAGCAGAAGGGAATCGAAAAACAGAATTAGAAACGAAAGCAAAAGAAGTTGTCGATTTAGAGAACAGAAGTCCAGTTGAGAACCCAGAGGACATGGTAGTTGAAGTTACTGCAAATGATAGTCTTGTTGCAGCATATAATGCAAAATCAGAAGCAGAAAGGAATGAAGGGATAACAGAATCTCAAAGCTCAATGAAGACTGCTACTGTAAATAAGCCTACCAAAAGGCGTATTACGCCTATGGCAATCGACCCTTGA

Protein Analysis

554

Amino Acids

60.9

Weight (kDa)

5.58

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 731
AccB1I GGYRCC 3 cut(s) 95, 572, 836
AccB7I CCANNNNNTGG 1 cut(s) 74
AccI GTMKAC 1 cut(s) 362
AciI CCGC 2 cut(s) 334, 889
AclWI GGATC 2 cut(s) 727, 1132
AcoI YGGCCR 2 cut(s) 495, 945
AcsI RAATTY 4 cut(s) 127, 955, 1103, 1399
AcuI CTGAAG 1 cut(s) 1260
AcyI GRCGYC 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 303
AfaI GTAC 3 cut(s) 48, 79, 965
AfiI CCNNNNNNNGG 1 cut(s) 74
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 8 cut(s) 473, 612, 813, 1109, 1211, 1262, 1358, 1508
AjnI CCWGG 1 cut(s) 832
AloI GAACNNNNNNTCC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 668, 764
AlwI GGATC 2 cut(s) 727, 1132
AlwNI CAGNNNCTG 1 cut(s) 448
AoxI GGCC 5 cut(s) 495, 615, 815, 945, 1325
ApeKI GCWGC 5 cut(s) 158, 506, 1022, 1385, 1535
ApoI RAATTY 4 cut(s) 127, 955, 1103, 1399
AspA2I CCTAGG 1 cut(s) 1063
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 310, 349, 487, 805
AsuHPI GGTGA 6 cut(s) 269, 323, 702, 1038, 1119, 1322
AsuII TTCGAA 1 cut(s) 694
AvaII GGWCC 4 cut(s) 310, 349, 487, 805
AvrII CCTAGG 1 cut(s) 1063
BalI TGGCCA 2 cut(s) 497, 947
BanI GGYRCC 3 cut(s) 95, 572, 836
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbsI GAAGAC 4 cut(s) 587, 1004, 1065, 1607
BbvI GCAGC 5 cut(s) 170, 493, 1034, 1397, 1547
BccI CCATC 7 cut(s) 362, 447, 666, 691, 710, 933, 1076
BciT130I CCWGG 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 668, 764
BfaI CTAG 4 cut(s) 56, 294, 798, 1064
BfmI CTRYAG 1 cut(s) 824
BfoI RGCGCY 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 5 cut(s) 159, 507, 1023, 1386, 1536
BlnI CCTAGG 1 cut(s) 1063
BlsI GCNGC 5 cut(s) 160, 508, 1024, 1387, 1537
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 4 cut(s) 310, 349, 487, 805
BmgT120I GGNCC 4 cut(s) 310, 349, 487, 805
BmiI GGNNCC 6 cut(s) 97, 488, 489, 574, 745, 838
BmrFI CCNGG 1 cut(s) 834
BmrI ACTGGG 2 cut(s) 1130, 1175
BmsI GCATC 2 cut(s) 417, 442
BmuI ACTGGG 2 cut(s) 1130, 1175
BpiI GAAGAC 4 cut(s) 587, 1004, 1065, 1607
BplI GAGNNNNNCTC 2 cut(s) 973, 1005
BpmI CTGGAG 3 cut(s) 246, 338, 788
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 1 cut(s) 1062
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 832, 1063
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 7 cut(s) 32, 94, 355, 771, 1125, 1181, 1478
Bse3DI GCAATG 1 cut(s) 1035
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 832, 1063
BseGI GGATG 3 cut(s) 424, 457, 640
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 1 cut(s) 1323
BseNI ACTGG 7 cut(s) 32, 94, 355, 771, 1125, 1181, 1478
BseXI GCAGC 5 cut(s) 170, 493, 1034, 1397, 1547
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 3 cut(s) 267, 747, 1075
BshFI GGCC 5 cut(s) 497, 617, 817, 947, 1327
BshNI GGYRCC 3 cut(s) 95, 572, 836
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 668, 764
BsmBI CGTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 5 cut(s) 497, 617, 817, 947, 1327
Bsp119I TTCGAA 1 cut(s) 694
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 3 cut(s) 21, 719, 1124
BspACI CCGC 2 cut(s) 334, 889
BspANI GGCC 5 cut(s) 497, 617, 817, 947, 1327
BspCNI CTCAG 1 cut(s) 1324
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 6 cut(s) 97, 488, 489, 574, 745, 838
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 2 cut(s) 727, 1132
BspT104I TTCGAA 1 cut(s) 694
BspT107I GGYRCC 3 cut(s) 95, 572, 836
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 1035
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 7 cut(s) 32, 94, 355, 771, 1125, 1181, 1478
BssECI CCNNGG 2 cut(s) 832, 1063
BssMI GATC 3 cut(s) 21, 719, 1124
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 1063
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 5 cut(s) 16, 630, 1258, 1376, 1612
Bst6I CTCTTC 1 cut(s) 1290
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 314
BstAPI GCANNNNNTGC 3 cut(s) 572, 1004, 1544
BstAUI TGTACA 1 cut(s) 963
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 7 cut(s) 237, 282, 599, 819, 841, 887, 1329
BstDEI CTNAG 4 cut(s) 39, 515, 642, 1332
BstEII GGTNACC 2 cut(s) 708, 1044
BstF5I GGATG 3 cut(s) 424, 457, 640
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 3 cut(s) 24, 722, 1127
BstMAI GTCTC 2 cut(s) 668, 764
BstMBI GATC 3 cut(s) 21, 719, 1124
BstMWI GCNNNNNNNGC 7 cut(s) 245, 503, 572, 1004, 1337, 1544, 1639
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 2 cut(s) 284, 605
BstPI GGTNACC 2 cut(s) 708, 1044
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 824
BstV1I GCAGC 5 cut(s) 170, 493, 1034, 1397, 1547
BstV2I GAAGAC 4 cut(s) 587, 1004, 1065, 1607
BsuRI GGCC 5 cut(s) 497, 617, 817, 947, 1327
BtsCI GGATG 3 cut(s) 424, 457, 640
BtsIMutI CAGTG 3 cut(s) 362, 626, 764
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 7 cut(s) 237, 282, 599, 819, 841, 887, 1329
CaiI CAGNNNCTG 1 cut(s) 448
CciI TCATGA 1 cut(s) 667
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 310, 349, 487, 805
Csp6I GTAC 3 cut(s) 47, 78, 964
CviQI GTAC 3 cut(s) 47, 78, 964
DdeI CTNAG 4 cut(s) 39, 515, 642, 1332
DinI GGCGCC 1 cut(s) 97
DpnI GATC 3 cut(s) 23, 721, 1126
DpnII GATC 3 cut(s) 21, 719, 1124
DraI TTTAAA 1 cut(s) 954
DraIII CACNNNGTG 1 cut(s) 303
EaeI YGGCCR 2 cut(s) 495, 945
Eam1104I CTCTTC 1 cut(s) 1290
EarI CTCTTC 1 cut(s) 1290
Eco130I CCWWGG 1 cut(s) 1063
Eco147I AGGCCT 1 cut(s) 817
Eco47I GGWCC 4 cut(s) 310, 349, 487, 805
Eco57I CTGAAG 1 cut(s) 1260
Eco91I GGTNACC 2 cut(s) 708, 1044
EcoO109I RGGNCCY 3 cut(s) 310, 487, 805
EcoO65I GGTNACC 2 cut(s) 708, 1044
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 1063
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 1063
Esp3I CGTCTC 1 cut(s) 668
FaqI GGGAC 1 cut(s) 500
FauI CCCGC 1 cut(s) 882
FauNDI CATATG 1 cut(s) 413
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 159, 507, 1023, 1386, 1536
FokI GGATG 3 cut(s) 431, 464, 647
Fsp4HI GCNGC 5 cut(s) 159, 507, 1023, 1386, 1536
FspBI CTAG 4 cut(s) 56, 294, 798, 1064
GlaI GCGC 1 cut(s) 97
GluI GCNGC 5 cut(s) 159, 507, 1023, 1386, 1536
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 3 cut(s) 246, 338, 788
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 5 cut(s) 497, 617, 817, 947, 1327
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 2 cut(s) 113, 917
HinfI GANTC 6 cut(s) 445, 638, 1267, 1358, 1417, 1583
HphI GGTGA 6 cut(s) 269, 323, 702, 1038, 1119, 1322
Hpy166II GTNNAC 3 cut(s) 363, 424, 1313
Hpy188I TCNGA 7 cut(s) 21, 444, 523, 1144, 1188, 1405, 1555
Hpy188III TCNNGA 5 cut(s) 225, 449, 668, 798, 1079
Hpy8I GTNNAC 3 cut(s) 363, 424, 1313
HpyAV CCTTC 6 cut(s) 218, 231, 301, 1330, 1406, 1565
HpyCH4III ACNGT 5 cut(s) 16, 630, 1258, 1376, 1612
HpyCH4IV ACGT 3 cut(s) 302, 677, 1094
HpyF10VI GCNNNNNNNGC 7 cut(s) 245, 503, 572, 1004, 1337, 1544, 1639
HpyF3I CTNAG 4 cut(s) 39, 515, 642, 1332
HpySE526I ACGT 3 cut(s) 302, 677, 1094
Hsp92I GRCGYC 1 cut(s) 96
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
KflI GGGWCCC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 21, 719, 1124
LmnI GCTCC 1 cut(s) 834
Lsp1109I GCAGC 5 cut(s) 170, 493, 1034, 1397, 1547
LweI GCATC 2 cut(s) 417, 442
MaeI CTAG 4 cut(s) 56, 294, 798, 1064
MaeII ACGT 3 cut(s) 302, 677, 1094
MaeIII GTNAC 5 cut(s) 708, 1044, 1085, 1163, 1510
MalI GATC 3 cut(s) 23, 721, 1126
MboI GATC 3 cut(s) 21, 719, 1124
MboII GAAGA 9 cut(s) 157, 592, 708, 1004, 1065, 1253, 1263, 1307, 1612
MfeI CAATTG 1 cut(s) 993
MlsI TGGCCA 2 cut(s) 497, 947
MluNI TGGCCA 2 cut(s) 497, 947
Mly113I GGCGCC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 612
Mox20I TGGCCA 2 cut(s) 497, 947
MscI TGGCCA 2 cut(s) 497, 947
MseI TTAA 4 cut(s) 122, 315, 915, 953
Msp20I TGGCCA 2 cut(s) 497, 947
MspA1I CMGCKG 1 cut(s) 1331
MspCI CTTAAG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 7 cut(s) 245, 503, 572, 1004, 1337, 1544, 1639
NarI GGCGCC 1 cut(s) 96
NdeI CATATG 1 cut(s) 413
NdeII GATC 3 cut(s) 21, 719, 1124
NlaIV GGNNCC 6 cut(s) 97, 488, 489, 574, 745, 838
NmeAIII GCCGAG 2 cut(s) 601, 643
NmuCI GTSAC 3 cut(s) 708, 1044, 1163
NspI RCATGY 2 cut(s) 284, 605
NspV TTCGAA 1 cut(s) 694
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 1 cut(s) 667
PceI AGGCCT 1 cut(s) 817
PfeI GAWTC 6 cut(s) 445, 638, 1267, 1358, 1417, 1583
PflFI GACNNNGTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 5 cut(s) 160, 508, 1024, 1387, 1537
PluTI GGCGCC 1 cut(s) 99
PpuMI RGGWCCY 3 cut(s) 310, 487, 805
Psp5II RGGWCCY 3 cut(s) 310, 487, 805
Psp6I CCWGG 1 cut(s) 832
PspEI GGTNACC 2 cut(s) 708, 1044
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 6 cut(s) 97, 488, 489, 574, 745, 838
PspPI GGNCC 4 cut(s) 310, 349, 487, 805
PspPPI RGGWCCY 3 cut(s) 310, 487, 805
PstNI CAGNNNCTG 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 3 cut(s) 48, 79, 965
RsaNI GTAC 3 cut(s) 47, 78, 964
SaqAI TTAA 4 cut(s) 122, 315, 915, 953
SatI GCNGC 5 cut(s) 159, 507, 1023, 1386, 1536
Sau3AI GATC 3 cut(s) 21, 719, 1124
Sau96I GGNCC 4 cut(s) 310, 349, 487, 805
ScrFI CCNGG 1 cut(s) 834
SfaNI GCATC 2 cut(s) 417, 442
SfcI CTRYAG 1 cut(s) 824
SfoI GGCGCC 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 4 cut(s) 310, 349, 487, 805
SmlI CTYRAG 2 cut(s) 314, 1077
SmoI CTYRAG 2 cut(s) 314, 1077
SphI GCATGC 1 cut(s) 284
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 2 cut(s) 334, 889
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 4 cut(s) 56, 294, 798, 1064
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 1 cut(s) 832
StyI CCWWGG 1 cut(s) 1063
TaaI ACNGT 5 cut(s) 16, 630, 1258, 1376, 1612
TaiI ACGT 3 cut(s) 305, 680, 1097
TaqI TCGA 6 cut(s) 105, 131, 694, 1420, 1458, 1653
TatI WGTACW 1 cut(s) 963
TfiI GAWTC 6 cut(s) 445, 638, 1267, 1358, 1417, 1583
Tru1I TTAA 4 cut(s) 122, 315, 915, 953
Tru9I TTAA 4 cut(s) 122, 315, 915, 953
TscAI CASTG 3 cut(s) 362, 633, 771
TseFI GTSAC 3 cut(s) 708, 1044, 1163
TseI GCWGC 5 cut(s) 158, 506, 1022, 1385, 1535
Tsp45I GTSAC 3 cut(s) 708, 1044, 1163
TspDTI ATGAA 7 cut(s) 17, 153, 656, 1128, 1131, 1584, 1613
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 3 cut(s) 362, 633, 771
Tth111I GACNNNGTC 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 314
VpaK11BI GGWCC 4 cut(s) 310, 349, 487, 805
XapI RAATTY 4 cut(s) 127, 955, 1103, 1399
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 2 cut(s) 284, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XmaJI CCTAGG 1 cut(s) 1063
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 4 cut(s) 56, 294, 798, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.