pycom01g02500

Chromatin assembly factor 1 subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
2009482 .. 2017291
7810 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02500.4

Sequence Viewer

Length: 1503 bp
ATGAAGGGAGGGACTGTTCAGATCAACTGGCACGACACCAAGCCGGTTCTGACCCTAGATTTCCACCCGATTTCCGGCACTCTCGCCACTGGTGGCGCCGATTTCGACATCAAGCTTTGGTTAATAAGTTCGAGCGAAACGGAGAAGAAACTCCCAGTAGTTTCATATCAAAATAGCCTTTCTTACCATAGTTCCGCCGTGAATGTTCTTCGCTTCTCTCGTTCAGGAGAACAACTTGCCTCTGGTGCGGACGGAGGTGAGCTCATTGTGTGGAAGTTGCATGCAACAGAAAATAGCAAAGTGTGGAAGGTCCTAAAGACATTGTTATTTCACCGCAAGGATGTGCTTGACCTCCAGTGGTCTACTGATGGTGCGTATCTCATCTCCGGGTCAGTGGATAATTCTTGCATCATATGGGATGTGAACAAAGGTTCTGTCCATCAGATTCTGGATTCCCATTGCCATTATGTTCAAGGTGTGGCATGGGACCCATTGGCCAACTATGTTGCTTCCCTTAGTTCTGATAGAACTTGTCGCATTTACGTCAAGAAACCTCATTCAAAAGGGACAGGTGCTGAGAAGACAAATTATGTTTCTCAGCATGTTATTTCGAAGGCTGAACATCCACTTTCGGATGATTCTAAGTCTGCTAAAAACCATCTCTTTCTTGATGAGACATTGCCATCTTTCTTTCGAAGATTAGCATGGTCACCTGATGGATCATTTCTGCTTGTTCCAGCAGGTTCCTACAAAGTATCACCCACACCAGAAACAGTAAATACTGCTTATGTATTTTCTAGGAAGGACCTTTCAAGGCCTGCTCTACAGCTCCCTGGTGCCTGCAAACCTGTTATAGCAGTTCGTTTCTGCCCTTTGCTTTTTAGCCTGCGGGGGTCAAATCAATCTGGGTTCTTTAACCTTCCCCACCGCATTGTTTTTGCTGTGGCCACTCTAAATTCTTTGTACATTTATGACACAGAGAGTGTTCCTCCGATTGCTATCTTTGCTGGTCTTCACTATGCAGCTATAACAGACATTGCATGGTCACCCGATGCTCATTATCTAGCACTGTCTTCTCAAGATGGTTACTGCACTGTTGTTGAATTTGAAAATAATGAACTGGGGTCACCTATCTACTTATCAGAAGAAAAGACAGTCGTGGGTCACGAGAAGAGAAGCCAAGTTCACAAGCCAGAGGACATGGTAATTGAAGCTATGCAAAATGATAGTCCTGTTGAGAAGGAAGAGGACATAGCAACTGAAGCTACTGCAACTGATAGTCTTATAACAACAGAGAGTGGAAAATCAGAAACGAAAGGAAAAGAGGTCGTGGGTGAAGAGAACGAAAGCTCAGTTGAGAAGCCAGATGACATGGTAGTTGATAGTATTGTTGCAGAAAAAATGGGAAAATCAGAAGCAGAAAGGAATGAAGGTAAAAATGAATCACCAATTGTAAGTAAACCTTTGAAAAGGCGTATTACACCCATGGCAATTGACCCCTAA

Protein Analysis

501

Amino Acids

55.08

Weight (kDa)

5.67

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1286
Acc36I ACCTGC 1 cut(s) 731
AccB1I GGYRCC 2 cut(s) 95, 836
AccI GTMKAC 1 cut(s) 362
AciI CCGC 5 cut(s) 195, 248, 334, 889, 928
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 495, 945
AcsI RAATTY 2 cut(s) 955, 1103
AcuI CTGAAG 1 cut(s) 1281
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 965
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 7 cut(s) 473, 561, 813, 1103, 1109, 1211, 1468
AjnI CCWGG 1 cut(s) 832
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 7 cut(s) 115, 262, 829, 1025, 1214, 1265, 1350
AluI AGCT 7 cut(s) 115, 262, 829, 1025, 1214, 1265, 1350
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 727
AlwNI CAGNNNCTG 2 cut(s) 448, 575
AoxI GGCC 3 cut(s) 495, 815, 945
ApeKI GCWGC 1 cut(s) 1022
ApoI RAATTY 2 cut(s) 955, 1103
ArsI GACNNNNNNTTYG 4 cut(s) 420, 452, 1213, 1245
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 310, 487, 805
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 8 cut(s) 269, 323, 702, 750, 1038, 1119, 1346, 1437
AsuII TTCGAA 2 cut(s) 611, 694
AvaII GGWCC 3 cut(s) 310, 487, 805
BalI TGGCCA 2 cut(s) 497, 947
BanI GGYRCC 2 cut(s) 95, 836
BanII GRGCYC 1 cut(s) 264
BauI CACGAG 1 cut(s) 1166
BbsI GAAGAC 3 cut(s) 587, 1004, 1065
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 1034
BccI CCATC 6 cut(s) 362, 447, 666, 691, 710, 1076
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 834
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 3 cut(s) 56, 798, 1064
BfmI CTRYAG 1 cut(s) 824
BfoI RGCGCY 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 1 cut(s) 1023
BlsI GCNGC 1 cut(s) 1024
Bme1390I CCNGG 2 cut(s) 388, 834
Bme18I GGWCC 3 cut(s) 310, 487, 805
BmgT120I GGNCC 3 cut(s) 310, 487, 805
BmiI GGNNCC 5 cut(s) 97, 488, 489, 745, 838
BmrFI CCNGG 2 cut(s) 388, 834
BmrI ACTGGG 2 cut(s) 149, 1130
BmsI GCATC 2 cut(s) 417, 1042
BmuI ACTGGG 2 cut(s) 149, 1130
BpiI GAAGAC 3 cut(s) 587, 1004, 1065
BplI GAGNNNNNCTC 4 cut(s) 246, 278, 973, 1005
BpmI CTGGAG 1 cut(s) 338
Bpu14I TTCGAA 2 cut(s) 611, 694
BpuEI CTTGAG 1 cut(s) 1062
BpuMI CCSGG 1 cut(s) 388
BsaBI GATNNNNATC 1 cut(s) 998
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 832, 1485
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 5 cut(s) 32, 94, 155, 355, 1125
Bse3DI GCAATG 3 cut(s) 457, 677, 1035
Bse8I GATNNNNATC 1 cut(s) 998
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 832, 1485
BseGI GGATG 4 cut(s) 346, 424, 622, 640
BseJI GATNNNNATC 1 cut(s) 998
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 3 cut(s) 457, 677, 1035
BseMII CTCAG 3 cut(s) 567, 611, 1365
BseNI ACTGG 5 cut(s) 32, 94, 155, 355, 1125
BseXI GCAGC 1 cut(s) 1034
BsgI GTGCAG 1 cut(s) 1075
BshFI GGCC 3 cut(s) 497, 817, 947
BshNI GGYRCC 2 cut(s) 95, 836
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 3 cut(s) 44, 75, 387
BslFI GGGAC 3 cut(s) 25, 500, 580
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 3 cut(s) 25, 500, 580
BsnI GGCC 3 cut(s) 497, 817, 947
Bsp119I TTCGAA 2 cut(s) 611, 694
Bsp1286I GDGCHC 1 cut(s) 264
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 2 cut(s) 21, 719
Bsp19I CCATGG 1 cut(s) 1485
BspACI CCGC 5 cut(s) 195, 248, 334, 889, 928
BspANI GGCC 3 cut(s) 497, 817, 947
BspCNI CTCAG 3 cut(s) 568, 610, 1364
BspLI GGNNCC 5 cut(s) 97, 488, 489, 745, 838
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 2 cut(s) 611, 694
BspT107I GGYRCC 2 cut(s) 95, 836
BsrDI GCAATG 3 cut(s) 457, 677, 1035
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 5 cut(s) 32, 94, 155, 355, 1125
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 832, 1485
BssMI GATC 2 cut(s) 21, 719
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 1166
BssT1I CCWWGG 1 cut(s) 1485
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 5 cut(s) 16, 775, 1071, 1096, 1156
Bst6I CTCTTC 3 cut(s) 1166, 1239, 1332
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 963
BstBI TTCGAA 2 cut(s) 611, 694
BstC8I GCNNGC 4 cut(s) 282, 819, 841, 887
BstDEI CTNAG 5 cut(s) 515, 576, 597, 642, 1351
BstDSI CCRYGG 1 cut(s) 1485
BstEII GGTNACC 3 cut(s) 708, 1044, 1125
BstF5I GGATG 4 cut(s) 346, 424, 622, 640
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 2 cut(s) 24, 722
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 2 cut(s) 21, 719
BstMWI GCNNNNNNNGC 3 cut(s) 245, 1004, 1262
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 2 cut(s) 284, 605
BstPI GGTNACC 3 cut(s) 708, 1044, 1125
BstSCI CCNGG 2 cut(s) 386, 832
BstSFI CTRYAG 1 cut(s) 824
BstV1I GCAGC 1 cut(s) 1034
BstV2I GAAGAC 3 cut(s) 587, 1004, 1065
BsuRI GGCC 3 cut(s) 497, 817, 947
BtgI CCRYGG 1 cut(s) 1485
BtsCI GGATG 4 cut(s) 346, 424, 622, 640
BtsIMutI CAGTG 5 cut(s) 87, 362, 399, 1067, 1092
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 4 cut(s) 282, 819, 841, 887
CaiI CAGNNNCTG 2 cut(s) 448, 575
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 310, 487, 805
Csp6I GTAC 1 cut(s) 964
CviAII CATG 8 cut(s) 281, 483, 602, 705, 1041, 1201, 1372, 1486
CviQI GTAC 1 cut(s) 964
DdeI CTNAG 5 cut(s) 515, 576, 597, 642, 1351
DinI GGCGCC 1 cut(s) 97
DpnI GATC 2 cut(s) 23, 721
DpnII GATC 2 cut(s) 21, 719
EaeI YGGCCR 2 cut(s) 495, 945
Eam1104I CTCTTC 3 cut(s) 1166, 1239, 1332
EarI CTCTTC 3 cut(s) 1166, 1239, 1332
EciI GGCGGA 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 1485
Eco147I AGGCCT 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 264
Eco47I GGWCC 3 cut(s) 310, 487, 805
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 1281
Eco91I GGTNACC 3 cut(s) 708, 1044, 1125
EcoICRI GAGCTC 1 cut(s) 262
EcoO109I RGGNCCY 3 cut(s) 310, 487, 805
EcoO65I GGTNACC 3 cut(s) 708, 1044, 1125
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 1485
EcoT38I GRGCYC 1 cut(s) 264
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 1485
FaeI CATG 8 cut(s) 284, 486, 605, 708, 1044, 1204, 1375, 1489
FalI AAGNNNNNCTT 2 cut(s) 1447, 1479
FaqI GGGAC 3 cut(s) 25, 500, 580
FatI CATG 8 cut(s) 280, 482, 601, 704, 1040, 1200, 1371, 1485
FauI CCCGC 1 cut(s) 882
FauNDI CATATG 1 cut(s) 413
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 1023
FokI GGATG 4 cut(s) 353, 431, 609, 647
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 1023
FspBI CTAG 3 cut(s) 56, 798, 1064
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 1023
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 3 cut(s) 497, 817, 947
HapII CCGG 3 cut(s) 44, 75, 387
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 8 cut(s) 284, 486, 605, 708, 1044, 1204, 1375, 1489
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 445, 452, 638, 1442
HpaII CCGG 3 cut(s) 44, 75, 387
HphI GGTGA 8 cut(s) 269, 323, 702, 750, 1038, 1119, 1346, 1437
Hpy166II GTNNAC 4 cut(s) 363, 424, 1186, 1460
Hpy188I TCNGA 9 cut(s) 21, 51, 444, 523, 634, 993, 1144, 1309, 1414
Hpy188III TCNNGA 6 cut(s) 225, 449, 547, 668, 1079, 1166
Hpy8I GTNNAC 4 cut(s) 363, 424, 1186, 1460
HpyAV CCTTC 6 cut(s) 301, 607, 796, 929, 1234, 1424
HpyCH4III ACNGT 5 cut(s) 16, 775, 1071, 1096, 1156
HpyCH4IV ACGT 1 cut(s) 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 1004, 1262
HpyF3I CTNAG 5 cut(s) 515, 576, 597, 642, 1351
HpySE526I ACGT 1 cut(s) 543
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 8 cut(s) 284, 486, 605, 708, 1044, 1204, 1375, 1489
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
KflI GGGWCCC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 21, 719
LmnI GCTCC 1 cut(s) 834
Lsp1109I GCAGC 1 cut(s) 1034
LweI GCATC 2 cut(s) 417, 1042
MaeI CTAG 3 cut(s) 56, 798, 1064
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 5 cut(s) 708, 1044, 1085, 1125, 1163
MalI GATC 2 cut(s) 23, 721
MboI GATC 2 cut(s) 21, 719
MfeI CAATTG 2 cut(s) 1449, 1491
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 2 cut(s) 497, 947
MluCI AATT 7 cut(s) 400, 586, 955, 1103, 1206, 1449, 1491
MluNI TGGCCA 2 cut(s) 497, 947
Mly113I GGCGCC 1 cut(s) 96
MnlI CCTC 8 cut(s) 248, 250, 362, 564, 999, 1189, 1240, 1318
Mox20I TGGCCA 2 cut(s) 497, 947
MscI TGGCCA 2 cut(s) 497, 947
MseI TTAA 2 cut(s) 122, 915
Msp20I TGGCCA 2 cut(s) 497, 947
MspI CCGG 3 cut(s) 44, 75, 387
MspR9I CCNGG 2 cut(s) 388, 834
MunI CAATTG 2 cut(s) 1449, 1491
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 3 cut(s) 245, 1004, 1262
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 1 cut(s) 388
NcoI CCATGG 1 cut(s) 1485
NdeI CATATG 1 cut(s) 413
NdeII GATC 2 cut(s) 21, 719
NlaIII CATG 8 cut(s) 284, 486, 605, 708, 1044, 1204, 1375, 1489
NlaIV GGNNCC 5 cut(s) 97, 488, 489, 745, 838
NmuCI GTSAC 4 cut(s) 708, 1044, 1125, 1163
NspI RCATGY 2 cut(s) 284, 605
NspV TTCGAA 2 cut(s) 611, 694
PaeI GCATGC 1 cut(s) 284
PceI AGGCCT 1 cut(s) 817
PcsI WCGNNNNNNNCGW 2 cut(s) 217, 1164
PfeI GAWTC 4 cut(s) 445, 452, 638, 1442
PkrI GCNGC 1 cut(s) 1024
PluTI GGCGCC 1 cut(s) 99
PpuMI RGGWCCY 3 cut(s) 310, 487, 805
PsiI TTATAA 1 cut(s) 1286
Psp124BI GAGCTC 1 cut(s) 264
Psp5II RGGWCCY 3 cut(s) 310, 487, 805
Psp6I CCWGG 1 cut(s) 832
PspEI GGTNACC 3 cut(s) 708, 1044, 1125
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 5 cut(s) 97, 488, 489, 745, 838
PspPI GGNCC 3 cut(s) 310, 487, 805
PspPPI RGGWCCY 3 cut(s) 310, 487, 805
PstNI CAGNNNCTG 2 cut(s) 448, 575
RsaI GTAC 1 cut(s) 965
RsaNI GTAC 1 cut(s) 964
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 122, 915
SatI GCNGC 1 cut(s) 1023
Sau3AI GATC 2 cut(s) 21, 719
Sau96I GGNCC 3 cut(s) 310, 487, 805
ScrFI CCNGG 2 cut(s) 388, 834
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 417, 1042
SfcI CTRYAG 1 cut(s) 824
SfoI GGCGCC 1 cut(s) 97
SfuI TTCGAA 2 cut(s) 611, 694
SinI GGWCC 3 cut(s) 310, 487, 805
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
SphI GCATGC 1 cut(s) 284
Sse9I AATT 7 cut(s) 400, 586, 955, 1103, 1206, 1449, 1491
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 5 cut(s) 195, 248, 334, 889, 928
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 3 cut(s) 56, 798, 1064
SstI GAGCTC 1 cut(s) 264
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 2 cut(s) 386, 832
StyI CCWWGG 1 cut(s) 1485
TaaI ACNGT 5 cut(s) 16, 775, 1071, 1096, 1156
TaiI ACGT 1 cut(s) 546
TaqI TCGA 4 cut(s) 105, 131, 611, 694
TasI AATT 7 cut(s) 400, 586, 955, 1103, 1206, 1449, 1491
TatI WGTACW 1 cut(s) 963
TfiI GAWTC 4 cut(s) 445, 452, 638, 1442
Tru1I TTAA 2 cut(s) 122, 915
Tru9I TTAA 2 cut(s) 122, 915
TscAI CASTG 5 cut(s) 94, 362, 399, 1074, 1099
TseFI GTSAC 4 cut(s) 708, 1044, 1125, 1163
TseI GCWGC 1 cut(s) 1022
Tsp45I GTSAC 4 cut(s) 708, 1044, 1125, 1163
TspDTI ATGAA 5 cut(s) 17, 153, 1131, 1443, 1455
TspGWI ACGGA 2 cut(s) 155, 267
TspRI CASTG 5 cut(s) 94, 362, 399, 1074, 1099
VpaK11BI GGWCC 3 cut(s) 310, 487, 805
XapI RAATTY 2 cut(s) 955, 1103
XceI RCATGY 2 cut(s) 284, 605
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 56, 798, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.