Prupe.6G162600_v2.0.a1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017230
Physical Location & Seq
Reverse (-)
15425129 .. 15427557
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G162600.1

Sequence Viewer

Length: 1644 bp
ATGCTCGAAAATTCAAAGTTACCGGAAAATCCAAGCACCGCCACAAGCAACCAGAATAATGAGGAGGTTGCTGGCGGCGGTGGGCCAGCCTCGGTTGGGTTTGAAGAGGAAGATAGGGCGGGACTTGAAGAGGGTTACCGGAACTGGTCAGGTAATCGGTGGCCTCGCCAAGAGACTTTGGCTTTGCTGAAGATAAGGTCAGATATGGATGCTGAGTTCAAGGAAGCAAGTATTAAGGTTCCTCTTTGGCAAGAGGTGTCCAGGAAAATGGGAGAGCTTGGACATAATAGGACCGCCAAGAAATGCAAGGAGAAATTTGAGAACATATACAAGTACCACAGAAGAACTAAAGAATCTGGTCGACCCAATGGCAAGGCTTATAGGTTTTTTGAGCAATTAGAGGCTCTAGACCATCACGATTTTGAACTTCCTCCTCCTCCTGCTTCTGAAAAAGTTCAAACTTCAGTAGCAGAAATAGCAACAAACCCAACAAATGTTGTTTACAATGCAATCCCATGTTCTTCTATTCAACATCCGGATTCGAGTTTTGTTGAAAACTCTAGTTCTACCACATCGTCTTCGAGCAAAGAATCTGAAGGCACGCATAAGAAAAAGAGGAGATTGACTGAGTTCTTTGAGAGGATGATGAATGAAGTGATAGACAAGCAAGAAAATTTACAGAAGAAGTTTGTAGAGGTATTGGAGAAGCATGAACAAGATCGAATAGCAAGGGAAGAGGCATGGAAGATGCAAGAATTGGCTAGAATTAAGAGAGAAAGAGAGATACTAGTTCAAGAGAGGTCGGTTGCAGCTGCAAAGGATGCTGCTGTTCTTGCATTTCTGCAAAAGTTTTCAGAACAGTCAGGCACAATGCAATTTCCAGAACAAGCATTTTCAGTGCATTTTCCAGCACAACCACCGTCATCAATGCAATTTCCAGAGCAACCATCCCCAGTGCAACTTCCGGAGCAACCACCATCAGGACAATTTCCAGAGCAATCAACCCCAGTGCAATTGCCTGTTAACTCACAAGCCGACACACTTATGGAGAAGCAAGAAAAGACAAATGATGCAAATGTTGTGCATATGAGTTTGGATAAGCAAGAAAGGAATAATGGTAGAAGTTATATGCATATGAGCTCTTCACGGTGGCCTAAAGAGGAAGTTGAAGCTTTGATTAAGATCAGAGCTGATTTTGATTTGCAGTATCAAGAAAGTGGACCTAAAGGGCCTCTGTGGGAGGAGATTTCAGCGGCCATGGTAAAGCTTGGTTATGACCGGAGCGCCAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAATACTACAGAAGAATAAAAGAAAGCAACAAAAAAAGGCCTGAGGATTCAAAGACGTGTGGTTATGTTCGCCTGCTGGATGCTTTGCACAATAAGAAGACTAATAGCGTTGAGAGTCAAGTTAACTCTACTTATGAATTGAAGCCTGAGGAGCTATTGATGCATATGATGGGTGGGCAAGCAGAGCAGCATCAGCCGGAAACAGTGACTGAGGATGGTGATAGCGAGAATGTTGATCAGATTCAAGGAGATGATGAAAATGCAGATGGAGATGGATATCAAATTGCATCCGGTAATCCTTCTTCAATGGCAATTATGAGCTGA

Protein Analysis

548

Amino Acids

62.28

Weight (kDa)

5.49

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23600 FvH4_1g23600
prunus_persica Prupe.6G162600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119181
rosa_laevigata RLG00000018449
rosa_multiflora Rmu_sc0000184.1_g000013
rosa_roxburghii Rroxscaffold_2G00124470
rosa_rugosa Rorug02G0220700
rosa_samantha Rh2AG278600 Rh2BG289500 Rh2DG284700 Rh2DG303700
rosa_wichuraiana Rw2G022140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 361
AccIII TCCGGA 2 cut(s) 535, 964
AciI CCGC 6 cut(s) 39, 75, 78, 119, 294, 1253
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 3 cut(s) 10, 314, 673
AcuI CTGAAG 3 cut(s) 209, 447, 615
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 96, 980
AflIII ACRYGT 1 cut(s) 1376
AhlI ACTAGT 1 cut(s) 787
AjiI CACGTC 1 cut(s) 1377
AjnI CCWGG 1 cut(s) 260
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 8 cut(s) 277, 812, 1140, 1172, 1190, 1267, 1474, 1641
AluI AGCT 8 cut(s) 277, 812, 1140, 1172, 1190, 1267, 1474, 1641
Alw21I GWGCWC 1 cut(s) 1142
Alw26I GTCTC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 1529
Aor13HI TCCGGA 2 cut(s) 535, 964
AoxI GGCC 6 cut(s) 83, 161, 1151, 1229, 1254, 1358
ApeKI GCWGC 4 cut(s) 809, 812, 824, 1507
ApoI RAATTY 3 cut(s) 10, 314, 673
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 4 cut(s) 83, 291, 1220, 1229
AsuHPI GGTGA 1 cut(s) 1550
AvaII GGWCC 2 cut(s) 291, 1220
AxyI CCTNAGG 2 cut(s) 1362, 1467
BanII GRGCYC 1 cut(s) 1142
BarI GAAGNNNNNNTAC 2 cut(s) 1606, 1638
BbsI GAAGAC 2 cut(s) 570, 1424
Bbv12I GWGCWC 1 cut(s) 1142
BbvI GCAGC 4 cut(s) 799, 811, 821, 1519
BccI CCATC 7 cut(s) 420, 955, 985, 1483, 1529, 1580, 1586
BciT130I CCWGG 1 cut(s) 262
BclI TGATCA 1 cut(s) 1555
BcoDI GTCTC 1 cut(s) 167
BcuI ACTAGT 1 cut(s) 787
BfaI CTAG 4 cut(s) 407, 561, 762, 788
BfmI CTRYAG 1 cut(s) 1327
BfoI RGCGCY 1 cut(s) 1287
BisI GCNGC 6 cut(s) 76, 810, 813, 825, 1254, 1508
BlsI GCNGC 6 cut(s) 77, 811, 814, 826, 1255, 1509
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 2 cut(s) 291, 1220
BmgBI CACGTC 1 cut(s) 1377
BmgT120I GGNCC 4 cut(s) 83, 291, 1220, 1229
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 262
BmrI ACTGGG 2 cut(s) 947, 1001
BmsI GCATC 8 cut(s) 199, 738, 811, 1060, 1390, 1470, 1519, 1616
BmuI ACTGGG 2 cut(s) 947, 1001
BpiI GAAGAC 2 cut(s) 570, 1424
BsaBI GATNNNNATC 2 cut(s) 1181, 1596
BsaJI CCNNGG 2 cut(s) 90, 1257
BsaWI WCCGGW 6 cut(s) 22, 138, 535, 964, 1278, 1610
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 980
Bse1I ACTGG 3 cut(s) 149, 953, 1007
Bse21I CCTNAGG 2 cut(s) 1362, 1467
Bse8I GATNNNNATC 2 cut(s) 1181, 1596
BseAI TCCGGA 2 cut(s) 535, 964
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 90, 1257
BseGI GGATG 8 cut(s) 214, 532, 648, 826, 947, 1405, 1540, 1607
BseJI GATNNNNATC 2 cut(s) 1181, 1596
BseLI CCNNNNNNNGG 2 cut(s) 96, 980
BseMII CTCAG 5 cut(s) 204, 618, 1353, 1458, 1521
BseNI ACTGG 3 cut(s) 149, 953, 1007
BseRI GAGGAG 6 cut(s) 77, 423, 426, 631, 1256, 1484
BseXI GCAGC 4 cut(s) 799, 811, 821, 1519
BshFI GGCC 6 cut(s) 85, 163, 1153, 1231, 1256, 1360
BsiHKAI GWGCWC 1 cut(s) 1142
BsiSI CCGG 7 cut(s) 23, 139, 536, 965, 1279, 1517, 1611
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 96, 980
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 6 cut(s) 85, 163, 1153, 1231, 1256, 1360
Bsp1286I GDGCHC 1 cut(s) 1142
Bsp13I TCCGGA 2 cut(s) 535, 964
Bsp143I GATC 3 cut(s) 718, 1182, 1555
Bsp19I CCATGG 1 cut(s) 1257
BspACI CCGC 6 cut(s) 39, 75, 78, 119, 294, 1253
BspANI GGCC 6 cut(s) 85, 163, 1153, 1231, 1256, 1360
BspCNI CTCAG 5 cut(s) 205, 619, 1354, 1459, 1522
BspEI TCCGGA 2 cut(s) 535, 964
BspLI GGNNCC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 1147
BsrI ACTGG 3 cut(s) 149, 953, 1007
BssECI CCNNGG 2 cut(s) 90, 1257
BssMI GATC 3 cut(s) 718, 1182, 1555
BssT1I CCWWGG 1 cut(s) 1257
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 4 cut(s) 861, 921, 1149, 1525
Bst6I CTCTTC 4 cut(s) 99, 123, 729, 1147
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 5 cut(s) 73, 87, 602, 1394, 1500
BstDEI CTNAG 5 cut(s) 213, 627, 1362, 1467, 1530
BstDSI CCRYGG 1 cut(s) 1257
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 8 cut(s) 214, 532, 648, 826, 947, 1405, 1540, 1607
BstH2I RGCGCY 1 cut(s) 1287
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 3 cut(s) 721, 1185, 1558
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 718, 1182, 1555
BstMWI GCNNNNNNNGC 7 cut(s) 476, 821, 833, 1471, 1480, 1504, 1513
BstNI CCWGG 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 1327
BstV1I GCAGC 4 cut(s) 799, 811, 821, 1519
BstV2I GAAGAC 2 cut(s) 570, 1424
BstXI CCANNNNNNTGG 1 cut(s) 268
Bsu36I CCTNAGG 2 cut(s) 1362, 1467
BsuRI GGCC 6 cut(s) 85, 163, 1153, 1231, 1256, 1360
BtgI CCRYGG 1 cut(s) 1257
BtrI CACGTC 1 cut(s) 1377
BtsCI GGATG 8 cut(s) 214, 532, 648, 826, 947, 1405, 1540, 1607
BtsIMutI CAGTG 4 cut(s) 903, 960, 1014, 1530
Cac8I GCNNGC 5 cut(s) 73, 87, 602, 1394, 1500
CaiI CAGNNNCTG 1 cut(s) 1529
CfoI GCGC 1 cut(s) 1286
Cfr13I GGNCC 4 cut(s) 83, 291, 1220, 1229
Csp6I GTAC 1 cut(s) 334
CviAII CATG 4 cut(s) 516, 710, 741, 1258
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 5 cut(s) 213, 627, 1362, 1467, 1530
DpnI GATC 3 cut(s) 720, 1184, 1557
DpnII GATC 3 cut(s) 718, 1182, 1555
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 4 cut(s) 99, 123, 729, 1147
EarI CTCTTC 4 cut(s) 99, 123, 729, 1147
Ecl136II GAGCTC 1 cut(s) 1140
Eco130I CCWWGG 1 cut(s) 1257
Eco147I AGGCCT 1 cut(s) 1360
Eco24I GRGCYC 1 cut(s) 1142
Eco32I GATATC 1 cut(s) 1598
Eco47I GGWCC 2 cut(s) 291, 1220
Eco53kI GAGCTC 1 cut(s) 1140
Eco57I CTGAAG 3 cut(s) 209, 447, 615
Eco81I CCTNAGG 2 cut(s) 1362, 1467
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 1140
EcoO109I RGGNCCY 1 cut(s) 1229
EcoO65I GGTNACC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 260
EcoRV GATATC 1 cut(s) 1598
EcoT14I CCWWGG 1 cut(s) 1257
EcoT22I ATGCAT 2 cut(s) 1134, 1485
EcoT38I GRGCYC 1 cut(s) 1142
ErhI CCWWGG 1 cut(s) 1257
FaeI CATG 4 cut(s) 519, 713, 744, 1261
FaqI GGGAC 1 cut(s) 135
FatI CATG 4 cut(s) 515, 709, 740, 1257
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 3 cut(s) 1086, 1134, 1485
FbaI TGATCA 1 cut(s) 1555
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 6 cut(s) 76, 810, 813, 825, 1254, 1508
FokI GGATG 8 cut(s) 221, 519, 655, 833, 934, 1412, 1547, 1594
FriOI GRGCYC 1 cut(s) 1142
Fsp4HI GCNGC 6 cut(s) 76, 810, 813, 825, 1254, 1508
FspBI CTAG 4 cut(s) 407, 561, 762, 788
GlaI GCGC 1 cut(s) 1285
GluI GCNGC 6 cut(s) 76, 810, 813, 825, 1254, 1508
HaeII RGCGCY 1 cut(s) 1287
HaeIII GGCC 6 cut(s) 85, 163, 1153, 1231, 1256, 1360
HapII CCGG 7 cut(s) 23, 139, 536, 965, 1279, 1517, 1611
HhaI GCGC 1 cut(s) 1286
Hin1II CATG 4 cut(s) 519, 713, 744, 1261
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HincII GTYRAC 3 cut(s) 362, 1024, 1444
HindII GTYRAC 3 cut(s) 362, 1024, 1444
HindIII AAGCTT 2 cut(s) 1170, 1265
HinfI GANTC 6 cut(s) 353, 539, 590, 1367, 1435, 1561
HpaI GTTAAC 2 cut(s) 1024, 1444
HpaII CCGG 7 cut(s) 23, 139, 536, 965, 1279, 1517, 1611
HphI GGTGA 1 cut(s) 1550
Hpy166II GTNNAC 5 cut(s) 362, 502, 1024, 1220, 1444
Hpy188I TCNGA 6 cut(s) 202, 448, 595, 856, 1187, 1560
Hpy8I GTNNAC 5 cut(s) 362, 502, 1024, 1220, 1444
HpyAV CCTTC 2 cut(s) 590, 1629
HpyCH4III ACNGT 4 cut(s) 861, 921, 1149, 1525
HpyCH4IV ACGT 1 cut(s) 1376
HpyF10VI GCNNNNNNNGC 7 cut(s) 476, 821, 833, 1471, 1480, 1504, 1513
HpyF3I CTNAG 5 cut(s) 213, 627, 1362, 1467, 1530
HpySE526I ACGT 1 cut(s) 1376
Hsp92II CATG 4 cut(s) 519, 713, 744, 1261
HspAI GCGC 1 cut(s) 1284
Kpn2I TCCGGA 2 cut(s) 535, 964
Ksp22I TGATCA 1 cut(s) 1555
KspAI GTTAAC 2 cut(s) 1024, 1444
Kzo9I GATC 3 cut(s) 718, 1182, 1555
LguI GCTCTTC 1 cut(s) 1147
LmnI GCTCC 3 cut(s) 967, 1281, 1471
Lsp1109I GCAGC 4 cut(s) 799, 811, 821, 1519
LweI GCATC 8 cut(s) 199, 738, 811, 1060, 1390, 1470, 1519, 1616
MaeI CTAG 4 cut(s) 407, 561, 762, 788
MaeII ACGT 1 cut(s) 1376
MaeIII GTNAC 3 cut(s) 18, 134, 1525
MalI GATC 3 cut(s) 720, 1184, 1557
MboI GATC 3 cut(s) 718, 1182, 1555
MfeI CAATTG 1 cut(s) 1013
MhlI GDGCHC 1 cut(s) 1142
MlyI GAGTC 1 cut(s) 1444
Mph1103I ATGCAT 2 cut(s) 1134, 1485
MroI TCCGGA 2 cut(s) 535, 964
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 5 cut(s) 234, 768, 1023, 1179, 1443
MslI CAYNNNNRTG 1 cut(s) 1043
MspA1I CMGCKG 2 cut(s) 812, 1253
MspI CCGG 7 cut(s) 23, 139, 536, 965, 1279, 1517, 1611
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 1013
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 7 cut(s) 476, 821, 833, 1471, 1480, 1504, 1513
NcoI CCATGG 1 cut(s) 1257
NdeI CATATG 3 cut(s) 1086, 1134, 1485
NdeII GATC 3 cut(s) 718, 1182, 1555
NlaIII CATG 4 cut(s) 519, 713, 744, 1261
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 1525
NsiI ATGCAT 2 cut(s) 1134, 1485
PceI AGGCCT 1 cut(s) 1360
PciSI GCTCTTC 1 cut(s) 1147
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 5 cut(s) 353, 539, 590, 1367, 1561
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 6 cut(s) 77, 811, 814, 826, 1255, 1509
PleI GAGTC 1 cut(s) 1443
PpsI GAGTC 1 cut(s) 1443
Psp124BI GAGCTC 1 cut(s) 1142
Psp6I CCWGG 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 4 cut(s) 83, 291, 1220, 1229
PstNI CAGNNNCTG 1 cut(s) 1529
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 1043
SacI GAGCTC 1 cut(s) 1142
SalI GTCGAC 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 1147
SaqAI TTAA 5 cut(s) 234, 768, 1023, 1179, 1443
SatI GCNGC 6 cut(s) 76, 810, 813, 825, 1254, 1508
Sau3AI GATC 3 cut(s) 718, 1182, 1555
Sau96I GGNCC 4 cut(s) 83, 291, 1220, 1229
SchI GAGTC 1 cut(s) 1444
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 1142
SfaNI GCATC 8 cut(s) 199, 738, 811, 1060, 1390, 1470, 1519, 1616
SfcI CTRYAG 1 cut(s) 1327
SinI GGWCC 2 cut(s) 291, 1220
SmiMI CAYNNNNRTG 1 cut(s) 1043
SpeI ACTAGT 1 cut(s) 787
SseBI AGGCCT 1 cut(s) 1360
SsiI CCGC 6 cut(s) 39, 75, 78, 119, 294, 1253
SspMI CTAG 4 cut(s) 407, 561, 762, 788
SstI GAGCTC 1 cut(s) 1142
StuI AGGCCT 1 cut(s) 1360
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 1257
TaaI ACNGT 4 cut(s) 861, 921, 1149, 1525
TaiI ACGT 1 cut(s) 1379
TaqI TCGA 5 cut(s) 6, 361, 542, 581, 721
TauI GCSGC 2 cut(s) 78, 1256
TfiI GAWTC 5 cut(s) 353, 539, 590, 1367, 1561
Tru1I TTAA 5 cut(s) 234, 768, 1023, 1179, 1443
Tru9I TTAA 5 cut(s) 234, 768, 1023, 1179, 1443
TscAI CASTG 4 cut(s) 903, 960, 1014, 1530
TseFI GTSAC 1 cut(s) 1525
TseI GCWGC 4 cut(s) 809, 812, 824, 1507
Tsp45I GTSAC 1 cut(s) 1525
TspDTI ATGAA 5 cut(s) 662, 666, 726, 1470, 1590
TspRI CASTG 4 cut(s) 903, 960, 1014, 1530
VpaK11BI GGWCC 2 cut(s) 291, 1220
XapI RAATTY 3 cut(s) 10, 314, 673
XbaI TCTAGA 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 4 cut(s) 407, 561, 762, 788
Zsp2I ATGCAT 2 cut(s) 1134, 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.