Rh2DG284700
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017230
Physical Location & Seq
Forward (+)
32759732 .. 32763917
4186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG284700.1

Sequence Viewer

Length: 1422 bp
ATGGGAGAGGCTGGATATAGCAGAGATGCCAAAAAATGCAAGGAGAAATTCGAGAACATATACAAGTACCACAAAAGGACTAGAGAAACGCGGTGCGGTCGATCAGCTGGCAAGACGTACAAGTATTTTGAGCAGTTAGAGGCTATAGAGCAACACCATTTTGAACATCCTCCTCCTGCTGAAACAGTTCAAGCTGAAACAGCGGCAACAATCCCAAAGGATGGTGTTTCCAATGCAATCCCCCCGTGTTCTTCAATTCAACACCAGCTTTCGAGTTTTGTTGATAACTCGACTCCCACCACATCGTGTTCAAGCAAAGAGTCTGAAGGCACGCACAAGAAGAAGAGGAGGGTAACTGAGTTCTTTGAGAAGTTGATGAAGCAAGTGATCGACAAGCAAGAGAATTTGCAGACCAAGTTTGTAGAGGTGATGGACAAGTATGAACAAGATCGGGTAGCGAGAGAAGAGGCGTGGAAGATGCAAGAAATGGCTAGAATTGAGAGAGAGAGAGAGCAGCTAGCTCAAGAGAGGTCTGTTGCAGCTGCAAAGGATTCTGCTGTTCTTGCATTTTTGCAAAAGTTTTCAGAACAAGCAGCCTCGGTGCATATGCCACCAGGCCAAGCATGCTCAGTTCAAATTCCAAATCAACCGTCCTCGGTGCAACTGCCCATGCAAGCAAGCTCAGTGCAATTACCAAATCAATCATCTTCTGTGCAACTGCCGGTGCAAGCATCTGCAGTCCGAGTTCAAATGCCTGATAACTCACCTTTGGCTAACACAGTAACTGACAAGCAGAAAAAGGATGAAGATTGGGAGCGTCTGCATAGGAGTTTGGAAAGGCCAGACAAGAATAATGGTAGAAGTCATACGCCTATTGGTTCTACACGGTGGCCTAGAGAAGAAGTTGAAGATTTGATTAAGCTGAGATCTAATTATGATTTGCAGTATCAAGAAAATGGATCTAAAGGGCATTTGTGGGAGGAGATTTCAGCATCCATGAAAAAGCTTGGTTATGACCGGAATGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTACAGAAGATTAAAAGATAGCAACAAGAAAAGGCCCGAGGATTCAAAGACATGTGCTTATTATAATGTGCTTGATGCTTTGTACAACAAGAAGACTAGTAGGGCTGAGAATCAAGTTGATTCTAATTATGAATTGAGGCCTGAGGAGCTATTGATGCATATGATGAGTGGGCAAGAAGAGCAGCCACAGCCAGAATCAGTGACTCAGAATGGTGATAGTGACAATGTTGAGAAGATTCAAGAAGATAATGGAAATGGAGAGGGAGTGGGAGATGTAGCTGGAGATGGCTATCGGATTGTAGCTGCTAATCCTTCTCCAATGGAACAAGATAATCCTTCAGTGGCAATTATGAGCTGA

Protein Analysis

473

Amino Acids

53.94

Weight (kDa)

6.32

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 1 - 49 2.6e-07 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 295 - 382 6.4e-24 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23600 FvH4_1g23600
prunus_persica Prupe.6G162600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119181
rosa_laevigata RLG00000018449
rosa_multiflora Rmu_sc0000184.1_g000013
rosa_roxburghii Rroxscaffold_2G00124470
rosa_rugosa Rorug02G0220700
rosa_samantha Rh2AG278600 Rh2BG289500 Rh2DG284700 Rh2DG303700
rosa_wichuraiana Rw2G022140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1128
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 1 cut(s) 91
AciI CCGC 3 cut(s) 91, 96, 203
AclWI GGATC 1 cut(s) 967
AcsI RAATTY 3 cut(s) 47, 403, 636
AcuI CTGAAG 2 cut(s) 345, 1386
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 4 cut(s) 68, 119, 1064, 1148
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 1115
AhlI ACTAGT 1 cut(s) 1160
AjnI CCWGG 1 cut(s) 613
AlwI GGATC 1 cut(s) 967
AlwNI CAGNNNCTG 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 1100
AoxI GGCC 5 cut(s) 616, 839, 890, 1097, 1202
ApeKI GCWGC 6 cut(s) 514, 539, 542, 593, 1246, 1367
ApoI RAATTY 3 cut(s) 47, 403, 636
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 1098
AsuHPI GGTGA 3 cut(s) 439, 756, 1289
AsuNHI GCTAGC 1 cut(s) 517
AvaI CYCGRG 1 cut(s) 1100
AxyI CCTNAGG 1 cut(s) 1206
BbsI GAAGAC 1 cut(s) 1163
BbvI GCAGC 6 cut(s) 526, 529, 551, 605, 1258, 1354
BccI CCATC 3 cut(s) 215, 424, 1343
BciT130I CCWGG 1 cut(s) 615
BcuI ACTAGT 1 cut(s) 1160
BfaI CTAG 5 cut(s) 81, 492, 518, 894, 1161
BfmI CTRYAG 3 cut(s) 144, 735, 1066
BglII AGATCT 1 cut(s) 926
BisI GCNGC 7 cut(s) 204, 515, 540, 543, 594, 1247, 1368
BlsI GCNGC 7 cut(s) 205, 516, 541, 544, 595, 1248, 1369
BmcAI AGTACT 1 cut(s) 1064
Bme1390I CCNGG 1 cut(s) 615
BmeT110I CYCGRG 1 cut(s) 1100
BmgT120I GGNCC 1 cut(s) 1098
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 6 cut(s) 16, 468, 740, 1001, 1129, 1209
BmtI GCTAGC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 1163
BpmI CTGGAG 1 cut(s) 1365
BpuEI CTTGAG 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 1353
BsaJI CCNNGG 3 cut(s) 597, 654, 1101
BsaWI WCCGGW 1 cut(s) 1017
BsaXI ACNNNNNCTCC 2 cut(s) 1314, 1344
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 721
Bse21I CCTNAGG 1 cut(s) 1206
Bse8I GATNNNNATC 1 cut(s) 1353
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 3 cut(s) 597, 654, 1101
BseGI GGATG 4 cut(s) 166, 226, 808, 992
BseJI GATNNNNATC 1 cut(s) 1353
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 7 cut(s) 348, 642, 696, 914, 1161, 1197, 1283
BseRI GAGGAG 4 cut(s) 162, 361, 995, 1223
BseXI GCAGC 6 cut(s) 526, 529, 551, 605, 1258, 1354
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 618, 841, 892, 1099, 1204
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 1100
BsiSI CCGG 2 cut(s) 722, 1018
BslI CCNNNNNNNGG 1 cut(s) 221
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 5 cut(s) 618, 841, 892, 1099, 1204
BsoBI CYCGRG 1 cut(s) 1100
Bsp1407I TGTACA 1 cut(s) 1146
Bsp143I GATC 5 cut(s) 101, 387, 448, 926, 959
BspACI CCGC 3 cut(s) 91, 96, 203
BspANI GGCC 5 cut(s) 618, 841, 892, 1099, 1204
BspCNI CTCAG 7 cut(s) 349, 641, 695, 915, 1162, 1198, 1282
BspFNI CGCG 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 739
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 1 cut(s) 967
BspQI GCTCTTC 1 cut(s) 1236
BsrFI RCCGGY 1 cut(s) 721
BsrGI TGTACA 1 cut(s) 1146
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 3 cut(s) 597, 654, 1101
BssMI GATC 5 cut(s) 101, 387, 448, 926, 959
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 4 cut(s) 187, 651, 781, 888
Bst6I CTCTTC 3 cut(s) 338, 459, 1236
BstAUI TGTACA 1 cut(s) 1146
BstC8I GCNNGC 7 cut(s) 109, 332, 519, 625, 675, 679, 729
BstDEI CTNAG 7 cut(s) 357, 628, 682, 923, 1170, 1206, 1269
BstF5I GGATG 4 cut(s) 166, 226, 808, 992
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 5 cut(s) 104, 390, 451, 929, 962
BstMBI GATC 5 cut(s) 101, 387, 448, 926, 959
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 7 cut(s) 200, 563, 624, 1210, 1219, 1243, 1252
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 2 cut(s) 627, 1119
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 3 cut(s) 144, 735, 1066
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 6 cut(s) 526, 529, 551, 605, 1258, 1354
BstV2I GAAGAC 1 cut(s) 1163
BstX2I RGATCY 2 cut(s) 926, 959
BstYI RGATCY 2 cut(s) 926, 959
Bsu36I CCTNAGG 1 cut(s) 1206
BsuRI GGCC 5 cut(s) 618, 841, 892, 1099, 1204
BtsCI GGATG 4 cut(s) 166, 226, 808, 992
BtsIMutI CAGTG 3 cut(s) 690, 1269, 1410
Cac8I GCNNGC 7 cut(s) 109, 332, 519, 625, 675, 679, 729
CaiI CAGNNNCTG 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 1 cut(s) 1098
CseI GACGC 1 cut(s) 806
Csp6I GTAC 4 cut(s) 67, 118, 1063, 1147
CviAII CATG 4 cut(s) 624, 670, 997, 1116
CviQI GTAC 4 cut(s) 67, 118, 1063, 1147
DdeI CTNAG 7 cut(s) 357, 628, 682, 923, 1170, 1206, 1269
DpnI GATC 5 cut(s) 103, 389, 450, 928, 961
DpnII GATC 5 cut(s) 101, 387, 448, 926, 959
DraIII CACNNNGTG 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 338, 459, 1236
EarI CTCTTC 3 cut(s) 338, 459, 1236
Eco147I AGGCCT 1 cut(s) 1204
Eco57I CTGAAG 2 cut(s) 345, 1386
Eco81I CCTNAGG 1 cut(s) 1206
Eco88I CYCGRG 1 cut(s) 1100
EcoRII CCWGG 1 cut(s) 613
EcoT22I ATGCAT 1 cut(s) 1224
FaeI CATG 4 cut(s) 627, 673, 1000, 1119
FatI CATG 4 cut(s) 623, 669, 996, 1115
FauNDI CATATG 2 cut(s) 606, 1224
Fnu4HI GCNGC 7 cut(s) 204, 515, 540, 543, 594, 1247, 1368
FokI GGATG 4 cut(s) 153, 233, 815, 979
Fsp4HI GCNGC 7 cut(s) 204, 515, 540, 543, 594, 1247, 1368
FspBI CTAG 5 cut(s) 81, 492, 518, 894, 1161
GluI GCNGC 7 cut(s) 204, 515, 540, 543, 594, 1247, 1368
GsuI CTGGAG 1 cut(s) 1365
HaeIII GGCC 5 cut(s) 618, 841, 892, 1099, 1204
HapII CCGG 2 cut(s) 722, 1018
HgaI GACGC 1 cut(s) 806
Hin1II CATG 4 cut(s) 627, 673, 1000, 1119
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 9 cut(s) 292, 320, 551, 1106, 1174, 1184, 1259, 1267, 1300
HpaII CCGG 2 cut(s) 722, 1018
HphI GGTGA 3 cut(s) 439, 756, 1289
Hpy188I TCNGA 5 cut(s) 325, 586, 743, 1272, 1359
Hpy188III TCNNGA 4 cut(s) 52, 524, 950, 1304
HpyAV CCTTC 3 cut(s) 320, 1386, 1410
HpyCH4III ACNGT 4 cut(s) 187, 651, 781, 888
HpyCH4IV ACGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 7 cut(s) 200, 563, 624, 1210, 1219, 1243, 1252
HpyF3I CTNAG 7 cut(s) 357, 628, 682, 923, 1170, 1206, 1269
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 4 cut(s) 627, 673, 1000, 1119
Kzo9I GATC 5 cut(s) 101, 387, 448, 926, 959
LguI GCTCTTC 1 cut(s) 1236
LmnI GCTCC 2 cut(s) 814, 1210
Lsp1109I GCAGC 6 cut(s) 526, 529, 551, 605, 1258, 1354
LweI GCATC 6 cut(s) 16, 468, 740, 1001, 1129, 1209
MaeI CTAG 5 cut(s) 81, 492, 518, 894, 1161
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 4 cut(s) 352, 781, 1264, 1283
MalI GATC 5 cut(s) 103, 389, 450, 928, 961
MboI GATC 5 cut(s) 101, 387, 448, 926, 959
MflI RGATCY 2 cut(s) 926, 959
MlyI GAGTC 3 cut(s) 286, 329, 1261
Mph1103I ATGCAT 1 cut(s) 1224
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 918, 1076
MspA1I CMGCKG 3 cut(s) 107, 203, 542
MspI CCGG 2 cut(s) 722, 1018
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 7 cut(s) 200, 563, 624, 1210, 1219, 1243, 1252
NdeI CATATG 2 cut(s) 606, 1224
NdeII GATC 5 cut(s) 101, 387, 448, 926, 959
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 4 cut(s) 627, 673, 1000, 1119
NmuCI GTSAC 2 cut(s) 1264, 1283
NsiI ATGCAT 1 cut(s) 1224
NspI RCATGY 2 cut(s) 627, 1119
PaeI GCATGC 1 cut(s) 627
PceI AGGCCT 1 cut(s) 1204
PciI ACATGT 1 cut(s) 1115
PciSI GCTCTTC 1 cut(s) 1236
PctI GAATGC 1 cut(s) 1027
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 6 cut(s) 551, 1106, 1174, 1184, 1259, 1300
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 7 cut(s) 205, 516, 541, 544, 595, 1248, 1369
PleI GAGTC 3 cut(s) 286, 328, 1261
PpsI GAGTC 3 cut(s) 286, 328, 1261
PscI ACATGT 1 cut(s) 1115
PsiI TTATAA 1 cut(s) 1128
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspPI GGNCC 1 cut(s) 1098
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 2 cut(s) 926, 959
PvuII CAGCTG 2 cut(s) 107, 542
RsaI GTAC 4 cut(s) 68, 119, 1064, 1148
RsaNI GTAC 4 cut(s) 67, 118, 1063, 1147
SapI GCTCTTC 1 cut(s) 1236
SaqAI TTAA 2 cut(s) 918, 1076
SatI GCNGC 7 cut(s) 204, 515, 540, 543, 594, 1247, 1368
Sau3AI GATC 5 cut(s) 101, 387, 448, 926, 959
Sau96I GGNCC 1 cut(s) 1098
ScaI AGTACT 1 cut(s) 1064
SchI GAGTC 3 cut(s) 286, 329, 1261
ScrFI CCNGG 1 cut(s) 615
SfaNI GCATC 6 cut(s) 16, 468, 740, 1001, 1129, 1209
SfcI CTRYAG 3 cut(s) 144, 735, 1066
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
SpeI ACTAGT 1 cut(s) 1160
SphI GCATGC 1 cut(s) 627
SseBI AGGCCT 1 cut(s) 1204
SsiI CCGC 3 cut(s) 91, 96, 203
SspMI CTAG 5 cut(s) 81, 492, 518, 894, 1161
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 4 cut(s) 187, 651, 781, 888
TaiI ACGT 1 cut(s) 119
TaqI TCGA 5 cut(s) 51, 100, 272, 290, 390
TatI WGTACW 2 cut(s) 1062, 1146
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 6 cut(s) 551, 1106, 1174, 1184, 1259, 1300
Tru1I TTAA 2 cut(s) 918, 1076
Tru9I TTAA 2 cut(s) 918, 1076
TscAI CASTG 3 cut(s) 690, 1269, 1410
TseFI GTSAC 2 cut(s) 1264, 1283
TseI GCWGC 6 cut(s) 514, 539, 542, 593, 1246, 1367
Tsp45I GTSAC 2 cut(s) 1264, 1283
TspDTI ATGAA 5 cut(s) 392, 456, 819, 1013, 1209
TspRI CASTG 3 cut(s) 690, 1269, 1410
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 3 cut(s) 47, 403, 636
XceI RCATGY 2 cut(s) 627, 1119
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 5 cut(s) 81, 492, 518, 894, 1161
ZrmI AGTACT 1 cut(s) 1064
Zsp2I ATGCAT 1 cut(s) 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.