RLG00000018449
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017230
Physical Location & Seq
Forward (+)
29916595 .. 29918599
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018449

Sequence Viewer

Length: 1698 bp
ATGCTGGAAAATTCAACTTTACCGGCCAATCCAAGCTCGCCCGCAAGCGACCGGAGAGCCGAGGAGGTCGCCGGCGATGGTGGGTCCGTCTCAGTTGGGCTTGAGGAGGAAGAGAGAGCCGGACTTGAACAGGGTTACCGGAACTGGGCCGGTAACCGGTGGCCTCGGCAGGAGACTCTGGCTCTGCTCAAGATAAGGTCAGATATGGACGCGGAGTTCAAGGCAGCCACCGCTAAAATGCCTCTGTGGGAAGAGGTTTCAAGGAAAATGGGAGAGGCTGGATATAGTAGAGATGCCAAAAAATGCAAGGAGAAATTCGAGAACATATACAAGTACCACAAAAGGACTAGAGAAACGCGGTGTGGTCGATCAGCTGGCAAGACTTATAAGTATTTTGAGCAGCTGGAGGCTATAGAGCAACACCATTTTGAACATCCTCCTCCTGCTGAAACAGTTCAAGCTGAAACAGCGGAAACAGCTGCAGCAATCCCAAAGGATGGTGTTTCCCATGCAATCCCCCCGTGTTCTTCAATTCAACACCAGCTTTCGAGTTTTGTTGATAACTCGACTCCCACCACATCATGTTCAAGCAAAGAGTCTGAAGGCACGCACAAGAAGAAGAGGAGAGTGACTGAGTTCTTTGAGAAGTTGATGAAGCAAGTGATCGACAAGCAAGAGAATTTGCAGACCAAGTTTGTAGAGGTGATGGACAAGTATGAACAAGATCGGGTAGCGAGAGAAGAGGCGTGGAAGATGCAAGAAATGGCTAGAATTGAGAGAGAGAGAGAGCAGCTAGCTCAAGAGAGGTCTGTTGCAGCTGCAAAGGATGCTGCTGTTCTTGCATTTTTGCAAAAGTTTTCAGAACAAGCAGCCTCAGTGCATATGCCACCAGGCCAAGCATGCTCAATTCAAATTCCAAGTCAACCGTCCTCGGTGCAATTGCCCATGCAAGCAGGCTCAGTGCAATTACCAAATCAATCATCTTCTGTGCAACTGCCGGTGCAAGCATCTGCAGTCCGAGTTCAAATGCCTGATAACTCACCTTTGGCTAACACAGCTACTGACAAGCAGAAAAAGGATGAAGATTGGGAGCGTCTGCCTAGGAGTTTGGAAAGGCCAGACAAGAATAATGGTAGAAGTCGTACACCTATTGGTTCTACACGGTGGCCTAGAGAAGAAGTTGAAGATTTGATTAAGCTGAGATCTAATTATGATTTGCAGTATCAAGAAAATGGATCCAAAGGGCATTTGTGGGAGGAGATTTCAGCATCCATGAAAAAGCTTGGTTATGACCGGAATGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTACAGAAGATTAAAAGATAGCAACAAGAAAAGGCCTGAGGATTCAAAGACATGTGCTTATTATAATGTGCTTGATGCTTTGTACAACAAGAAGACTAGTAAGGCTGAGAATCAAGTTGATTCTAATTATGAATTGAGGCCTGAGGAGCTATTGATGCATATGATGAGTGGGCAAGAAGAGCAGCAACAGCCGGAATCAGTGACTCAGAATGGTGATAGTGACAATGTTGAGAAGATTCAAGAAGATAATGGAAGTGGAGAGGGAGTAGGAGATGTAGCTGGAGATGGCTATCGGATTGTAGCTGCTAATCCTTGTCCAATGGAACAAGATAATCCTTCAGTGGCAATTATGAGCTGA

Protein Analysis

566

Amino Acids

63.95

Weight (kDa)

5.89

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 52 - 138 5.6e-21 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 387 - 474 8.4e-24 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23600 FvH4_1g23600
prunus_persica Prupe.6G162600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119181
rosa_laevigata RLG00000018449
rosa_multiflora Rmu_sc0000184.1_g000013
rosa_roxburghii Rroxscaffold_2G00124470
rosa_rugosa Rorug02G0220700
rosa_samantha Rh2AG278600 Rh2BG289500 Rh2DG284700 Rh2DG303700
rosa_wichuraiana Rw2G022140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 387, 1404
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 2 cut(s) 212, 358
AciI CCGC 5 cut(s) 42, 212, 231, 358, 470
AclWI GGATC 2 cut(s) 1230, 1243
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 4 cut(s) 10, 314, 679, 912
AcuI CTGAAG 2 cut(s) 621, 1662
AfaI GTAC 4 cut(s) 335, 1144, 1340, 1424
AfiI CCNNNNNNNGG 3 cut(s) 145, 156, 497
AflIII ACRYGT 1 cut(s) 1391
AgeI ACCGGT 1 cut(s) 156
AhlI ACTAGT 1 cut(s) 1436
AjnI CCWGG 1 cut(s) 889
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
Alw26I GTCTC 2 cut(s) 94, 167
AlwI GGATC 2 cut(s) 1230, 1243
AlwNI CAGNNNCTG 1 cut(s) 1061
AoxI GGCC 8 cut(s) 24, 147, 161, 892, 1115, 1166, 1373, 1478
ApoI RAATTY 4 cut(s) 10, 314, 679, 912
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
AsiGI ACCGGT 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 453
AspA2I CCTAGG 1 cut(s) 1100
AspS9I GGNCC 2 cut(s) 84, 147
AsuHPI GGTGA 3 cut(s) 715, 1032, 1565
AsuNHI GCTAGC 1 cut(s) 793
AvaII GGWCC 1 cut(s) 84
AvrII CCTAGG 1 cut(s) 1100
AxyI CCTNAGG 2 cut(s) 1377, 1482
BamHI GGATCC 1 cut(s) 1235
BbsI GAAGAC 1 cut(s) 1439
BccI CCATC 4 cut(s) 71, 491, 700, 1619
BciT130I CCWGG 1 cut(s) 891
BcoDI GTCTC 2 cut(s) 94, 167
BcuI ACTAGT 1 cut(s) 1436
BfaI CTAG 6 cut(s) 348, 768, 794, 1101, 1170, 1437
BfmI CTRYAG 4 cut(s) 411, 480, 1011, 1342
BglII AGATCT 1 cut(s) 1202
BlnI CCTAGG 1 cut(s) 1100
BmcAI AGTACT 1 cut(s) 1340
Bme1390I CCNGG 1 cut(s) 891
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 84, 147
BmiI GGNNCC 2 cut(s) 85, 1237
BmrFI CCNGG 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 7 cut(s) 283, 744, 817, 1016, 1277, 1405, 1485
BmtI GCTAGC 1 cut(s) 797
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 1439
BpmI CTGGAG 2 cut(s) 425, 1641
BpuEI CTTGAG 3 cut(s) 122, 173, 783
BsaBI GATNNNNATC 1 cut(s) 1629
BsaJI CCNNGG 4 cut(s) 60, 164, 930, 1100
BsaWI WCCGGW 4 cut(s) 51, 138, 156, 1293
BsaXI ACNNNNNCTCC 2 cut(s) 1590, 1620
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 156, 497
Bse118I RCCGGY 5 cut(s) 22, 71, 149, 156, 997
Bse1I ACTGG 1 cut(s) 149
Bse21I CCTNAGG 2 cut(s) 1377, 1482
Bse8I GATNNNNATC 1 cut(s) 1629
BseBI CCWGG 1 cut(s) 891
BseDI CCNNGG 4 cut(s) 60, 164, 930, 1100
BseGI GGATG 5 cut(s) 433, 502, 832, 1084, 1268
BseJI GATNNNNATC 1 cut(s) 1629
BseLI CCNNNNNNNGG 3 cut(s) 145, 156, 497
BseMII CTCAG 9 cut(s) 105, 624, 888, 972, 1190, 1368, 1437, 1473, 1559
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 6 cut(s) 77, 119, 429, 637, 1271, 1499
Bsh1236I CGCG 2 cut(s) 212, 358
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 8 cut(s) 26, 149, 163, 894, 1117, 1168, 1375, 1480
BshTI ACCGGT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 145, 156, 497
BsmAI GTCTC 2 cut(s) 94, 167
BsmBI CGTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 1303
BsnI GGCC 8 cut(s) 26, 149, 163, 894, 1117, 1168, 1375, 1480
Bsp1407I TGTACA 1 cut(s) 1422
Bsp143I GATC 5 cut(s) 368, 663, 724, 1202, 1235
BspACI CCGC 5 cut(s) 42, 212, 231, 358, 470
BspANI GGCC 8 cut(s) 26, 149, 163, 894, 1117, 1168, 1375, 1480
BspCNI CTCAG 9 cut(s) 104, 625, 887, 971, 1191, 1369, 1438, 1474, 1558
BspFNI CGCG 2 cut(s) 212, 358
BspLI GGNNCC 2 cut(s) 85, 1237
BspMAI CTGCAG 2 cut(s) 484, 1015
BspOI GCTAGC 1 cut(s) 797
BspPI GGATC 2 cut(s) 1230, 1243
BspQI GCTCTTC 1 cut(s) 1512
BsrFI RCCGGY 5 cut(s) 22, 71, 149, 156, 997
BsrGI TGTACA 1 cut(s) 1422
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 5 cut(s) 22, 71, 149, 156, 997
BssECI CCNNGG 4 cut(s) 60, 164, 930, 1100
BssMI GATC 5 cut(s) 368, 663, 724, 1202, 1235
BssT1I CCWWGG 1 cut(s) 1100
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 3 cut(s) 454, 927, 1164
Bst6I CTCTTC 5 cut(s) 105, 246, 614, 735, 1512
BstAPI GCANNNNNTGC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1422
BstDEI CTNAG 9 cut(s) 91, 633, 874, 958, 1199, 1377, 1446, 1482, 1545
BstEII GGTNACC 2 cut(s) 134, 152
BstF5I GGATG 5 cut(s) 433, 502, 832, 1084, 1268
BstFNI CGCG 2 cut(s) 212, 358
BstKTI GATC 5 cut(s) 371, 666, 727, 1205, 1238
BstMAI GTCTC 2 cut(s) 94, 167
BstMBI GATC 5 cut(s) 368, 663, 724, 1202, 1235
BstMCI CGRYCG 1 cut(s) 52
BstNI CCWGG 1 cut(s) 891
BstNSI RCATGY 2 cut(s) 903, 1395
BstPI GGTNACC 2 cut(s) 134, 152
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 4 cut(s) 411, 480, 1011, 1342
BstUI CGCG 2 cut(s) 212, 358
BstV2I GAAGAC 1 cut(s) 1439
BstX2I RGATCY 2 cut(s) 1202, 1235
BstYI RGATCY 2 cut(s) 1202, 1235
Bsu36I CCTNAGG 2 cut(s) 1377, 1482
BsuRI GGCC 8 cut(s) 26, 149, 163, 894, 1117, 1168, 1375, 1480
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 5 cut(s) 433, 502, 832, 1084, 1268
BtsIMutI CAGTG 4 cut(s) 882, 966, 1545, 1686
CaiI CAGNNNCTG 1 cut(s) 1061
Cfr10I RCCGGY 5 cut(s) 22, 71, 149, 156, 997
Cfr13I GGNCC 2 cut(s) 84, 147
CseI GACGC 2 cut(s) 218, 1082
Csp6I GTAC 4 cut(s) 334, 1143, 1339, 1423
CspAI ACCGGT 1 cut(s) 156
CviAII CATG 6 cut(s) 509, 582, 900, 946, 1273, 1392
CviQI GTAC 4 cut(s) 334, 1143, 1339, 1423
DdeI CTNAG 9 cut(s) 91, 633, 874, 958, 1199, 1377, 1446, 1482, 1545
DpnI GATC 5 cut(s) 370, 665, 726, 1204, 1237
DpnII GATC 5 cut(s) 368, 663, 724, 1202, 1235
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 5 cut(s) 105, 246, 614, 735, 1512
EarI CTCTTC 5 cut(s) 105, 246, 614, 735, 1512
Eco130I CCWWGG 1 cut(s) 1100
Eco147I AGGCCT 2 cut(s) 1375, 1480
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 621, 1662
Eco81I CCTNAGG 2 cut(s) 1377, 1482
Eco91I GGTNACC 2 cut(s) 134, 152
EcoO65I GGTNACC 2 cut(s) 134, 152
EcoRII CCWGG 1 cut(s) 889
EcoT14I CCWWGG 1 cut(s) 1100
EcoT22I ATGCAT 1 cut(s) 1500
ErhI CCWWGG 1 cut(s) 1100
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 6 cut(s) 512, 585, 903, 949, 1276, 1395
FatI CATG 6 cut(s) 508, 581, 899, 945, 1272, 1391
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 2 cut(s) 882, 1500
FokI GGATG 5 cut(s) 420, 509, 839, 1091, 1255
FspBI CTAG 6 cut(s) 348, 768, 794, 1101, 1170, 1437
GsuI CTGGAG 2 cut(s) 425, 1641
HaeIII GGCC 8 cut(s) 26, 149, 163, 894, 1117, 1168, 1375, 1480
HgaI GACGC 2 cut(s) 218, 1082
Hin1II CATG 6 cut(s) 512, 585, 903, 949, 1276, 1395
HincII GTYRAC 1 cut(s) 923
HindII GTYRAC 1 cut(s) 923
HindIII AAGCTT 1 cut(s) 1280
HinfI GANTC 9 cut(s) 175, 568, 596, 1382, 1450, 1460, 1535, 1543, 1576
HphI GGTGA 3 cut(s) 715, 1032, 1565
Hpy166II GTNNAC 2 cut(s) 923, 1145
Hpy188I TCNGA 6 cut(s) 202, 601, 862, 1019, 1548, 1635
Hpy188III TCNNGA 5 cut(s) 190, 319, 800, 1226, 1580
Hpy8I GTNNAC 2 cut(s) 923, 1145
HpyAV CCTTC 2 cut(s) 596, 1686
HpyCH4III ACNGT 3 cut(s) 454, 927, 1164
HpyF3I CTNAG 9 cut(s) 91, 633, 874, 958, 1199, 1377, 1446, 1482, 1545
Hsp92II CATG 6 cut(s) 512, 585, 903, 949, 1276, 1395
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 368, 663, 724, 1202, 1235
LguI GCTCTTC 1 cut(s) 1512
LmnI GCTCC 2 cut(s) 1090, 1486
LweI GCATC 7 cut(s) 283, 744, 817, 1016, 1277, 1405, 1485
MaeI CTAG 6 cut(s) 348, 768, 794, 1101, 1170, 1437
MaeIII GTNAC 5 cut(s) 134, 152, 628, 1540, 1559
MalI GATC 5 cut(s) 370, 665, 726, 1204, 1237
MboI GATC 5 cut(s) 368, 663, 724, 1202, 1235
MfeI CAATTG 1 cut(s) 938
MflI RGATCY 2 cut(s) 1202, 1235
MlyI GAGTC 4 cut(s) 169, 562, 605, 1537
Mph1103I ATGCAT 1 cut(s) 1500
MreI CGCCGGCG 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 2 cut(s) 1194, 1352
MspA1I CMGCKG 5 cut(s) 374, 403, 470, 479, 818
MspR9I CCNGG 1 cut(s) 891
MunI CAATTG 1 cut(s) 938
Mva1269I GAATGC 1 cut(s) 1303
MvaI CCWGG 1 cut(s) 891
MvnI CGCG 2 cut(s) 212, 358
NaeI GCCGGC 1 cut(s) 73
NdeI CATATG 2 cut(s) 882, 1500
NdeII GATC 5 cut(s) 368, 663, 724, 1202, 1235
NgoMIV GCCGGC 1 cut(s) 71
NheI GCTAGC 1 cut(s) 793
NlaIII CATG 6 cut(s) 512, 585, 903, 949, 1276, 1395
NlaIV GGNNCC 2 cut(s) 85, 1237
NmeAIII GCCGAG 2 cut(s) 85, 145
NmuCI GTSAC 3 cut(s) 628, 1540, 1559
NsiI ATGCAT 1 cut(s) 1500
NspI RCATGY 2 cut(s) 903, 1395
PaeI GCATGC 1 cut(s) 903
PceI AGGCCT 2 cut(s) 1375, 1480
PciI ACATGT 1 cut(s) 1391
PciSI GCTCTTC 1 cut(s) 1512
PctI GAATGC 1 cut(s) 1303
PdiI GCCGGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 5 cut(s) 1382, 1450, 1460, 1535, 1576
PflMI CCANNNNNTGG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 156
PleI GAGTC 4 cut(s) 169, 562, 604, 1537
PpsI GAGTC 4 cut(s) 169, 562, 604, 1537
PscI ACATGT 1 cut(s) 1391
PsiI TTATAA 2 cut(s) 387, 1404
Psp6I CCWGG 1 cut(s) 889
PspEI GGTNACC 2 cut(s) 134, 152
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 2 cut(s) 85, 1237
PspPI GGNCC 2 cut(s) 84, 147
PstI CTGCAG 2 cut(s) 484, 1015
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 2 cut(s) 1202, 1235
PvuII CAGCTG 4 cut(s) 374, 403, 479, 818
RsaI GTAC 4 cut(s) 335, 1144, 1340, 1424
RsaNI GTAC 4 cut(s) 334, 1143, 1339, 1423
SapI GCTCTTC 1 cut(s) 1512
SaqAI TTAA 2 cut(s) 1194, 1352
Sau3AI GATC 5 cut(s) 368, 663, 724, 1202, 1235
Sau96I GGNCC 2 cut(s) 84, 147
ScaI AGTACT 1 cut(s) 1340
SchI GAGTC 4 cut(s) 169, 562, 605, 1537
ScrFI CCNGG 1 cut(s) 891
SfaNI GCATC 7 cut(s) 283, 744, 817, 1016, 1277, 1405, 1485
SfcI CTRYAG 4 cut(s) 411, 480, 1011, 1342
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 101, 188, 798
SmoI CTYRAG 3 cut(s) 101, 188, 798
SpeI ACTAGT 1 cut(s) 1436
SphI GCATGC 1 cut(s) 903
SseBI AGGCCT 2 cut(s) 1375, 1480
SsiI CCGC 5 cut(s) 42, 212, 231, 358, 470
SspMI CTAG 6 cut(s) 348, 768, 794, 1101, 1170, 1437
StuI AGGCCT 2 cut(s) 1375, 1480
StyD4I CCNGG 1 cut(s) 889
StyI CCWWGG 1 cut(s) 1100
TaaI ACNGT 3 cut(s) 454, 927, 1164
TaqI TCGA 5 cut(s) 318, 367, 548, 566, 666
TatI WGTACW 2 cut(s) 1338, 1422
TfiI GAWTC 5 cut(s) 1382, 1450, 1460, 1535, 1576
Tru1I TTAA 2 cut(s) 1194, 1352
Tru9I TTAA 2 cut(s) 1194, 1352
TscAI CASTG 4 cut(s) 882, 966, 1545, 1686
TseFI GTSAC 3 cut(s) 628, 1540, 1559
Tsp45I GTSAC 3 cut(s) 628, 1540, 1559
TspDTI ATGAA 5 cut(s) 668, 732, 1095, 1289, 1485
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 4 cut(s) 882, 966, 1545, 1686
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 4 cut(s) 10, 314, 679, 912
XceI RCATGY 2 cut(s) 903, 1395
XmaJI CCTAGG 1 cut(s) 1100
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 6 cut(s) 348, 768, 794, 1101, 1170, 1437
ZrmI AGTACT 1 cut(s) 1340
Zsp2I ATGCAT 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.