Rmu_sc0000184.1_g000013
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000184.1
OG0017230
Physical Location & Seq
Reverse (-)
44673 .. 46645
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000184.1_g000013.1.cds

Sequence Viewer

Length: 1674 bp
atgctggacaattcaactttaccggccaatccaagctcgcccgcaagcgaccggagagccgaggaggtcgccggggatggtgggtccgtctcagtcgggcttgaggaggaagagagagccggacttgaacagggttaccggaactgggccggtaaccggtggcctcggcaggagactctggctctgctcaagataaggtcagatatggacgcggagttcaaggcagccagcgctaaaatgcctctgtgggaagaggtatcaaggaaaatgggagaggctggatatagcagagatgccaaaaaatgcaaggagaaattcgagaacatatacaagtaccacaaaaggactagagaaacgcggtgcggtcgatcagctggcaagacgtacaagtattttgagcagttagaggctatagagcaacaccattttgaacatcctcctcctgctgaaacagttcaagctgaaacagcggcaacaatcccaaaggatggtgttcccaatgcaatccccccgtgttcttcaattcaacaccagctttcgagttttgttgataactcgactcccaccacatcatgttcaagcaaagagtctgaaggcacgcacaagaagaagaggagggtaactgagttctttgagaagttgatgaagcaagtgatcgacaagcaagagaatttgcagaccaagtttgtagaggtgatggacaagtatgaacaagatcgggtagcgagagaagaggcgtggaagatgcaagaaatggctagaattgagagagagagagagcagctagctcaagagaggtctgttgcagctgcaaaggattctgctgttcttgcatttttgcaaaagttttcagaacaagcagcctcggtgcatatgccaccaggccaagcatgctcagttcaaattccaaatcaactgcccatgcaagcatgctcagtgcaattaccaaatcaatcatcttctgtgcaactgccggcgcaagcatctgcagtccgagttcaaatgcctgataactcacctttggctaacacagtaactgacaagcagaaaaaggatgaagattgggagcgtctgcagaggagtttggaaaggccagacaagaataatggtagaagtcgtacgcctattggttctacacggtggcctagagaagaagttgaagatttgattaagctgagatctaattatgatttgcagtatcaagaaaatggatctaaagggcatttgtgggaggagatttcagcatccatgaaaaagcttggttatgaccggaatgccaagaggtgcaaggagaagtgggagaacataaacaagtactacagaagattaaaagatagcaacaagaaaaggcccgaggattcaaagacatgtgcttattataatgtgcttgatgctttgtacaacaagaagactagtagggctgagaatcaagttgattctaattatgaattgaggcctgaggagctattgatgcatatgatgagtgggcaagaagagcagccacagccagaatcagtgactcagaatggtgatagtgacaatgttgagaagattcaagaagataatggaaatggagtgggagtggaagatgtagctggagatggctatcggattgtagctgctaatccttctccaatggaacaagataatccttcagtggcaattatgagctga

Protein Analysis

557

Amino Acids

63.29

Weight (kDa)

5.93

Isoelectric Point (pI)

65.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23600 FvH4_1g23600
prunus_persica Prupe.6G162600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119181
rosa_laevigata RLG00000018449
rosa_multiflora Rmu_sc0000184.1_g000013
rosa_roxburghii Rroxscaffold_2G00124470
rosa_rugosa Rorug02G0220700
rosa_samantha Rh2AG278600 Rh2BG289500 Rh2DG284700 Rh2DG303700
rosa_wichuraiana Rw2G022140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1380
AccB7I CCANNNNNTGG 1 cut(s) 488
AccII CGCG 2 cut(s) 212, 358
AciI CCGC 5 cut(s) 42, 212, 358, 363, 470
AclWI GGATC 1 cut(s) 1219
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 3 cut(s) 314, 670, 903
AcuI CTGAAG 2 cut(s) 612, 1638
AfaI GTAC 5 cut(s) 335, 386, 1120, 1316, 1400
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 145, 156, 488
AflIII ACRYGT 1 cut(s) 1367
AgeI ACCGGT 1 cut(s) 156
AhlI ACTAGT 1 cut(s) 1412
AjnI CCWGG 1 cut(s) 880
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
Alw26I GTCTC 2 cut(s) 94, 167
AlwI GGATC 1 cut(s) 1219
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 1352
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 8 cut(s) 24, 147, 161, 883, 1091, 1142, 1349, 1454
ApeKI GCWGC 7 cut(s) 224, 781, 806, 809, 860, 1498, 1619
ApoI RAATTY 3 cut(s) 314, 670, 903
AsiGI ACCGGT 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 2 cut(s) 233, 979
AspS9I GGNCC 3 cut(s) 84, 147, 1350
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 706, 1008, 1541
AsuNHI GCTAGC 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 1352
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 1458
BbsI GAAGAC 1 cut(s) 1415
BbvI GCAGC 7 cut(s) 236, 793, 796, 818, 872, 1510, 1606
BccI CCATC 4 cut(s) 71, 482, 691, 1595
BciT130I CCWGG 1 cut(s) 882
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 94, 167
BcuI ACTAGT 1 cut(s) 1412
BfaI CTAG 5 cut(s) 348, 759, 785, 1146, 1413
BfmI CTRYAG 4 cut(s) 411, 987, 1073, 1318
BfoI RGCGCY 1 cut(s) 234
BglII AGATCT 1 cut(s) 1178
BisI GCNGC 8 cut(s) 225, 471, 782, 807, 810, 861, 1499, 1620
BlsI GCNGC 8 cut(s) 226, 472, 783, 808, 811, 862, 1500, 1621
BmcAI AGTACT 1 cut(s) 1316
Bme1390I CCNGG 2 cut(s) 73, 882
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 1352
BmgT120I GGNCC 3 cut(s) 84, 147, 1350
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 73, 882
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 6 cut(s) 283, 735, 992, 1253, 1381, 1461
BmtI GCTAGC 1 cut(s) 788
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 1415
BpmI CTGGAG 1 cut(s) 1617
BpuEI CTTGAG 3 cut(s) 122, 173, 774
BpuMI CCSGG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 1605
BsaJI CCNNGG 5 cut(s) 60, 72, 164, 864, 1353
BsaWI WCCGGW 4 cut(s) 51, 138, 156, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 1566, 1596
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 156, 488
Bse118I RCCGGY 4 cut(s) 22, 149, 156, 973
Bse1I ACTGG 1 cut(s) 149
Bse21I CCTNAGG 1 cut(s) 1458
Bse8I GATNNNNATC 1 cut(s) 1605
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 5 cut(s) 60, 72, 164, 864, 1353
BseGI GGATG 5 cut(s) 82, 433, 493, 1060, 1244
BseJI GATNNNNATC 1 cut(s) 1605
BseLI CCNNNNNNNGG 3 cut(s) 145, 156, 488
BseMII CTCAG 8 cut(s) 105, 615, 909, 948, 1166, 1413, 1449, 1535
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 7 cut(s) 77, 119, 429, 628, 1093, 1247, 1475
BseXI GCAGC 7 cut(s) 236, 793, 796, 818, 872, 1510, 1606
Bsh1236I CGCG 2 cut(s) 212, 358
Bsh1285I CGRYCG 2 cut(s) 52, 367
BshFI GGCC 8 cut(s) 26, 149, 163, 885, 1093, 1144, 1351, 1456
BshTI ACCGGT 1 cut(s) 156
BsiEI CGRYCG 2 cut(s) 52, 367
BsiHKCI CYCGRG 1 cut(s) 1352
BsiSI CCGG 9 cut(s) 23, 52, 72, 120, 139, 150, 157, 974, 1270
BsiWI CGTACG 1 cut(s) 1118
BslI CCNNNNNNNGG 3 cut(s) 145, 156, 488
BsmAI GTCTC 2 cut(s) 94, 167
BsmBI CGTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 8 cut(s) 26, 149, 163, 885, 1093, 1144, 1351, 1456
BsoBI CYCGRG 1 cut(s) 1352
Bsp1407I TGTACA 1 cut(s) 1398
Bsp143I GATC 5 cut(s) 368, 654, 715, 1178, 1211
BspACI CCGC 5 cut(s) 42, 212, 358, 363, 470
BspANI GGCC 8 cut(s) 26, 149, 163, 885, 1093, 1144, 1351, 1456
BspCNI CTCAG 8 cut(s) 104, 616, 908, 947, 1167, 1414, 1450, 1534
BspFNI CGCG 2 cut(s) 212, 358
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 2 cut(s) 991, 1077
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 1 cut(s) 1219
BspQI GCTCTTC 1 cut(s) 1488
BsrFI RCCGGY 4 cut(s) 22, 149, 156, 973
BsrGI TGTACA 1 cut(s) 1398
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 4 cut(s) 22, 149, 156, 973
BssECI CCNNGG 5 cut(s) 60, 72, 164, 864, 1353
BssMI GATC 5 cut(s) 368, 654, 715, 1178, 1211
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 454, 1033, 1140
Bst6I CTCTTC 5 cut(s) 105, 246, 605, 726, 1488
BstAUI TGTACA 1 cut(s) 1398
BstDEI CTNAG 8 cut(s) 91, 624, 895, 934, 1175, 1422, 1458, 1521
BstEII GGTNACC 2 cut(s) 134, 152
BstF5I GGATG 5 cut(s) 82, 433, 493, 1060, 1244
BstFNI CGCG 2 cut(s) 212, 358
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 2 cut(s) 233, 979
BstKTI GATC 5 cut(s) 371, 657, 718, 1181, 1214
BstMAI GTCTC 2 cut(s) 94, 167
BstMBI GATC 5 cut(s) 368, 654, 715, 1178, 1211
BstMCI CGRYCG 2 cut(s) 52, 367
BstMWI GCNNNNNNNGC 8 cut(s) 230, 467, 830, 891, 1462, 1471, 1495, 1504
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 3 cut(s) 894, 933, 1371
BstPI GGTNACC 2 cut(s) 134, 152
BstSCI CCNGG 2 cut(s) 71, 880
BstSFI CTRYAG 4 cut(s) 411, 987, 1073, 1318
BstUI CGCG 2 cut(s) 212, 358
BstV1I GCAGC 7 cut(s) 236, 793, 796, 818, 872, 1510, 1606
BstV2I GAAGAC 1 cut(s) 1415
BstX2I RGATCY 2 cut(s) 1178, 1211
BstYI RGATCY 2 cut(s) 1178, 1211
Bsu36I CCTNAGG 1 cut(s) 1458
BsuRI GGCC 8 cut(s) 26, 149, 163, 885, 1093, 1144, 1351, 1456
BtsCI GGATG 5 cut(s) 82, 433, 493, 1060, 1244
BtsIMutI CAGTG 3 cut(s) 942, 1521, 1662
CaiI CAGNNNCTG 1 cut(s) 1037
CfoI GCGC 2 cut(s) 233, 979
Cfr10I RCCGGY 4 cut(s) 22, 149, 156, 973
Cfr13I GGNCC 3 cut(s) 84, 147, 1350
CseI GACGC 2 cut(s) 218, 1058
Csp6I GTAC 5 cut(s) 334, 385, 1119, 1315, 1399
CspAI ACCGGT 1 cut(s) 156
CviAII CATG 6 cut(s) 573, 891, 922, 930, 1249, 1368
CviQI GTAC 5 cut(s) 334, 385, 1119, 1315, 1399
DdeI CTNAG 8 cut(s) 91, 624, 895, 934, 1175, 1422, 1458, 1521
DpnI GATC 5 cut(s) 370, 656, 717, 1180, 1213
DpnII GATC 5 cut(s) 368, 654, 715, 1178, 1211
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 5 cut(s) 105, 246, 605, 726, 1488
EarI CTCTTC 5 cut(s) 105, 246, 605, 726, 1488
Eco147I AGGCCT 1 cut(s) 1456
Eco47I GGWCC 1 cut(s) 84
Eco47III AGCGCT 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 612, 1638
Eco81I CCTNAGG 1 cut(s) 1458
Eco88I CYCGRG 1 cut(s) 1352
Eco91I GGTNACC 2 cut(s) 134, 152
EcoO65I GGTNACC 2 cut(s) 134, 152
EcoRII CCWGG 1 cut(s) 880
EcoT22I ATGCAT 1 cut(s) 1476
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 6 cut(s) 576, 894, 925, 933, 1252, 1371
FatI CATG 6 cut(s) 572, 890, 921, 929, 1248, 1367
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 2 cut(s) 873, 1476
Fnu4HI GCNGC 8 cut(s) 225, 471, 782, 807, 810, 861, 1499, 1620
FokI GGATG 5 cut(s) 89, 420, 500, 1067, 1231
Fsp4HI GCNGC 8 cut(s) 225, 471, 782, 807, 810, 861, 1499, 1620
FspBI CTAG 5 cut(s) 348, 759, 785, 1146, 1413
GlaI GCGC 2 cut(s) 232, 978
GluI GCNGC 8 cut(s) 225, 471, 782, 807, 810, 861, 1499, 1620
GsuI CTGGAG 1 cut(s) 1617
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 8 cut(s) 26, 149, 163, 885, 1093, 1144, 1351, 1456
HapII CCGG 9 cut(s) 23, 52, 72, 120, 139, 150, 157, 974, 1270
HgaI GACGC 2 cut(s) 218, 1058
HhaI GCGC 2 cut(s) 233, 979
Hin1II CATG 6 cut(s) 576, 894, 925, 933, 1252, 1371
Hin6I GCGC 2 cut(s) 231, 977
HinP1I GCGC 2 cut(s) 231, 977
HindIII AAGCTT 1 cut(s) 1256
HpaII CCGG 9 cut(s) 23, 52, 72, 120, 139, 150, 157, 974, 1270
HphI GGTGA 3 cut(s) 706, 1008, 1541
Hpy188I TCNGA 6 cut(s) 202, 592, 853, 995, 1524, 1611
Hpy188III TCNNGA 5 cut(s) 190, 319, 791, 1202, 1556
HpyAV CCTTC 3 cut(s) 587, 1638, 1662
HpyCH4III ACNGT 3 cut(s) 454, 1033, 1140
HpyCH4IV ACGT 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 8 cut(s) 230, 467, 830, 891, 1462, 1471, 1495, 1504
HpyF3I CTNAG 8 cut(s) 91, 624, 895, 934, 1175, 1422, 1458, 1521
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 6 cut(s) 576, 894, 925, 933, 1252, 1371
HspAI GCGC 2 cut(s) 231, 977
KroI GCCGGC 1 cut(s) 973
KroNI GCCGGC 1 cut(s) 975
Kzo9I GATC 5 cut(s) 368, 654, 715, 1178, 1211
LguI GCTCTTC 1 cut(s) 1488
LmnI GCTCC 2 cut(s) 1066, 1462
Lsp1109I GCAGC 7 cut(s) 236, 793, 796, 818, 872, 1510, 1606
LweI GCATC 6 cut(s) 283, 735, 992, 1253, 1381, 1461
MaeI CTAG 5 cut(s) 348, 759, 785, 1146, 1413
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 6 cut(s) 134, 152, 619, 1033, 1516, 1535
MalI GATC 5 cut(s) 370, 656, 717, 1180, 1213
MboI GATC 5 cut(s) 368, 654, 715, 1178, 1211
MflI RGATCY 2 cut(s) 1178, 1211
MlyI GAGTC 4 cut(s) 169, 553, 596, 1513
Mph1103I ATGCAT 1 cut(s) 1476
MroNI GCCGGC 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 2 cut(s) 1170, 1328
MspA1I CMGCKG 3 cut(s) 374, 470, 809
MspI CCGG 9 cut(s) 23, 52, 72, 120, 139, 150, 157, 974, 1270
MspR9I CCNGG 2 cut(s) 73, 882
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 2 cut(s) 212, 358
MwoI GCNNNNNNNGC 8 cut(s) 230, 467, 830, 891, 1462, 1471, 1495, 1504
NaeI GCCGGC 1 cut(s) 975
NciI CCSGG 1 cut(s) 73
NdeI CATATG 2 cut(s) 873, 1476
NdeII GATC 5 cut(s) 368, 654, 715, 1178, 1211
NgoMIV GCCGGC 1 cut(s) 973
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 6 cut(s) 576, 894, 925, 933, 1252, 1371
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 2 cut(s) 85, 145
NmuCI GTSAC 2 cut(s) 1516, 1535
NsiI ATGCAT 1 cut(s) 1476
NspI RCATGY 3 cut(s) 894, 933, 1371
PaeI GCATGC 2 cut(s) 894, 933
PceI AGGCCT 1 cut(s) 1456
PciI ACATGT 1 cut(s) 1367
PciSI GCTCTTC 1 cut(s) 1488
PctI GAATGC 1 cut(s) 1279
PdiI GCCGGC 1 cut(s) 975
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 6 cut(s) 818, 1358, 1426, 1436, 1511, 1552
Pfl23II CGTACG 1 cut(s) 1118
PflMI CCANNNNNTGG 1 cut(s) 488
PinAI ACCGGT 1 cut(s) 156
PkrI GCNGC 8 cut(s) 226, 472, 783, 808, 811, 862, 1500, 1621
PleI GAGTC 4 cut(s) 169, 553, 595, 1513
PpsI GAGTC 4 cut(s) 169, 553, 595, 1513
PscI ACATGT 1 cut(s) 1367
PsiI TTATAA 1 cut(s) 1380
Psp6I CCWGG 1 cut(s) 880
PspEI GGTNACC 2 cut(s) 134, 152
PspGI CCWGG 1 cut(s) 880
PspLI CGTACG 1 cut(s) 1118
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 3 cut(s) 84, 147, 1350
PstI CTGCAG 2 cut(s) 991, 1077
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 2 cut(s) 1178, 1211
PvuII CAGCTG 2 cut(s) 374, 809
RsaI GTAC 5 cut(s) 335, 386, 1120, 1316, 1400
RsaNI GTAC 5 cut(s) 334, 385, 1119, 1315, 1399
SapI GCTCTTC 1 cut(s) 1488
SaqAI TTAA 2 cut(s) 1170, 1328
SatI GCNGC 8 cut(s) 225, 471, 782, 807, 810, 861, 1499, 1620
Sau3AI GATC 5 cut(s) 368, 654, 715, 1178, 1211
Sau96I GGNCC 3 cut(s) 84, 147, 1350
ScaI AGTACT 1 cut(s) 1316
SchI GAGTC 4 cut(s) 169, 553, 596, 1513
ScrFI CCNGG 2 cut(s) 73, 882
SfaNI GCATC 6 cut(s) 283, 735, 992, 1253, 1381, 1461
SfcI CTRYAG 4 cut(s) 411, 987, 1073, 1318
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 101, 188, 789
SmoI CTYRAG 3 cut(s) 101, 188, 789
SpeI ACTAGT 1 cut(s) 1412
SphI GCATGC 2 cut(s) 894, 933
SseBI AGGCCT 1 cut(s) 1456
SsiI CCGC 5 cut(s) 42, 212, 358, 363, 470
SspMI CTAG 5 cut(s) 348, 759, 785, 1146, 1413
StuI AGGCCT 1 cut(s) 1456
StyD4I CCNGG 2 cut(s) 71, 880
TaaI ACNGT 3 cut(s) 454, 1033, 1140
TaiI ACGT 1 cut(s) 386
TaqI TCGA 5 cut(s) 318, 367, 539, 557, 657
TatI WGTACW 2 cut(s) 1314, 1398
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 6 cut(s) 818, 1358, 1426, 1436, 1511, 1552
Tru1I TTAA 2 cut(s) 1170, 1328
Tru9I TTAA 2 cut(s) 1170, 1328
TscAI CASTG 3 cut(s) 942, 1521, 1662
TseFI GTSAC 2 cut(s) 1516, 1535
TseI GCWGC 7 cut(s) 224, 781, 806, 809, 860, 1498, 1619
Tsp45I GTSAC 2 cut(s) 1516, 1535
TspDTI ATGAA 5 cut(s) 659, 723, 1071, 1265, 1461
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 3 cut(s) 942, 1521, 1662
Van91I CCANNNNNTGG 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 3 cut(s) 314, 670, 903
XceI RCATGY 3 cut(s) 894, 933, 1371
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 5 cut(s) 348, 759, 785, 1146, 1413
ZrmI AGTACT 1 cut(s) 1316
Zsp2I ATGCAT 1 cut(s) 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.