Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017230

Physical Location & Seq

Genomic Coordinates Reverse (-)

21355560 .. 21356423

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0220700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGGATCGATCACATTCATCTTTTTTTATATATTTTTTTAGATATCAAGTGGTTCAGTTTGATGGGGGTGGAGAGAGGAACGGAGTCGAAGGAATTGCGGATGGAGTTTTGGGGATTGTTGGCGGGAGTGTAGGCAGTGAGTTGGCCGGCAATGGAGGTAGTGTAGTTGGCAAGGGTGTTGTAGGCAATGCTGATTTCGGAAAAGATGGTATTGATGGCAATGGCGGCAATGTGGCCTTTGGCAGAGTTGGGGCAGTCGGAAGTGAAGGCAAGGGGTTTGAGGGCAGGGGTGGCAATGTGGCCTTGGGTAGTGTTGGTAGTGAGCTGGCTGGCAATGGAGGTAGTGTCGCGGGCAAGGGGGTTGTCGGCACAGTAGGCAATGCTGATTTTGGCAAAGATGGGATTACAGGTGGGGTGATAGGCGGTGTAGGCAACGGGGTAGATGGCAATGGTGGCAAAGTGGCTTTTGGAAGAGTTGGGGTAGTTGGAAGTGTAGGTAAGGGATTTGAGGGCAATGGTGGTAATGTGGCCTTGGGCAGTGTTGGTATCGAGGGCAACGGGGGCAGGGTGGCCTTGGGCAGTGTCGGTGCCGAGCGTAGTGGAGGCAATGCCGTCTTGGGCAGAGAGGGAATCGCGGGCACTACTGGCAGTGCTGGTGGAGGAGCTGCTGCTGTGTCCAAGAGGTGGCGAGCTGCTTGGTTCATTTGGGTGCTCGAGAGCGACAAGACTGCGACCAAAGATAGAACGAAGAACTACTTGGGAAGAGTCATCATTGAAATTAATGGAGCTGCCAAGGCAAATATGATCTATAAAAATGGTGTTTCTTGTTATGAGAAGACAGTACTTCATTGGTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

287

Amino Acids

28.21

Weight (kDa)

8.94

Isoelectric Point (pI)

5.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23600 FvH4_1g23600
prunus_persica	Prupe.6G162600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119181
rosa_laevigata	RLG00000018449
rosa_multiflora	Rmu_sc0000184.1_g000013
rosa_roxburghii	Rroxscaffold_2G00124470
rosa_rugosa	Rorug02G0220700
rosa_samantha	Rh2AG278600 Rh2BG289500 Rh2DG284700 Rh2DG303700
rosa_wichuraiana	Rw2G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccII	CGCG	2 cut(s)	353, 638
AciI	CCGC	6 cut(s)	101, 126, 228, 353, 426, 638
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	1 cut(s)	846
AfiI	CCNNNNNNNGG	1 cut(s)	687
AgsI	TTSAA	1 cut(s)	779
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	4 cut(s)	328, 668, 695, 791
AluI	AGCT	4 cut(s)	328, 668, 695, 791
Alw21I	GWGCWC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	5 cut(s)	147, 237, 303, 531, 573
ApeKI	GCWGC	4 cut(s)	668, 671, 695, 791
AseI	ATTAAT	1 cut(s)	783
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	4 cut(s)	655, 658, 682, 778
BccI	CCATC	6 cut(s)	59, 98, 203, 212, 395, 440
BceAI	ACGGC	1 cut(s)	599
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 713, 747
BisI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
BlsI	GCNGC	5 cut(s)	230, 670, 673, 697, 793
BmcAI	AGTACT	1 cut(s)	846
BmeT110I	CYCGRG	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	845
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	4 cut(s)	306, 534, 576, 795
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	652
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	4 cut(s)	306, 534, 576, 795
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	1 cut(s)	678
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	4 cut(s)	655, 658, 682, 778
Bsh1236I	CGCG	2 cut(s)	353, 638
BshFI	GGCC	5 cut(s)	149, 239, 305, 533, 575
BshNI	GGYRCC	1 cut(s)	590
BshVI	ATCGAT	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	687
BsnI	GGCC	5 cut(s)	149, 239, 305, 533, 575
BsoBI	CYCGRG	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	644, 717
Bsp143I	GATC	3 cut(s)	7, 11, 807
BspACI	CCGC	6 cut(s)	101, 126, 228, 353, 426, 638
BspANI	GGCC	5 cut(s)	149, 239, 305, 533, 575
BspDI	ATCGAT	1 cut(s)	10
BspFNI	CGCG	2 cut(s)	353, 638
BspLI	GGNNCC	1 cut(s)	592
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	4 cut(s)	306, 534, 576, 795
BssMI	GATC	3 cut(s)	7, 11, 807
BssT1I	CCWWGG	4 cut(s)	306, 534, 576, 795
Bst4CI	ACNGT	2 cut(s)	376, 844
Bst6I	CTCTTC	2 cut(s)	469, 760
BstC8I	GCNNGC	6 cut(s)	151, 330, 334, 355, 640, 693
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	2 cut(s)	353, 638
BstKTI	GATC	3 cut(s)	10, 14, 810
BstMBI	GATC	3 cut(s)	7, 11, 807
BstMWI	GCNNNNNNNGC	8 cut(s)	228, 294, 378, 432, 456, 564, 648, 797
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	2 cut(s)	353, 638
BstV1I	GCAGC	4 cut(s)	655, 658, 682, 778
BstV2I	GAAGAC	1 cut(s)	845
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	5 cut(s)	149, 239, 305, 533, 575
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	4 cut(s)	145, 547, 589, 658
BtsIMutI	CAGTG	4 cut(s)	145, 547, 589, 658
Cac8I	GCNNGC	6 cut(s)	151, 330, 334, 355, 640, 693
Cfr10I	RCCGGY	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	845
CviQI	GTAC	1 cut(s)	845
DpnI	GATC	3 cut(s)	9, 13, 809
DpnII	GATC	3 cut(s)	7, 11, 807
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	469, 760
EarI	CTCTTC	2 cut(s)	469, 760
Eco130I	CCWWGG	4 cut(s)	306, 534, 576, 795
Eco32I	GATATC	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	47
EcoT14I	CCWWGG	4 cut(s)	306, 534, 576, 795
ErhI	CCWWGG	4 cut(s)	306, 534, 576, 795
FaiI	YATR	6 cut(s)	32, 34, 806, 813, 834, 862
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FauI	CCCGC	3 cut(s)	119, 346, 631
Fnu4HI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
GluI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
HaeIII	GGCC	5 cut(s)	149, 239, 305, 533, 575
HapII	CCGG	1 cut(s)	150
HinfI	GANTC	3 cut(s)	87, 633, 768
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	203, 263
Hpy188III	TCNNGA	1 cut(s)	718
HpyAV	CCTTC	2 cut(s)	86, 263
HpyCH4III	ACNGT	2 cut(s)	376, 844
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	8 cut(s)	228, 294, 378, 432, 456, 564, 648, 797
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	7, 11, 807
LmnI	GCTCC	2 cut(s)	665, 788
LpnPI	CCDG	8 cut(s)	163, 274, 314, 318, 396, 553, 633, 642
Lsp1109I	GCAGC	4 cut(s)	655, 658, 682, 778
MalI	GATC	3 cut(s)	9, 13, 809
MboI	GATC	3 cut(s)	7, 11, 807
MboII	GAAGA	4 cut(s)	486, 763, 777, 850
MhlI	GDGCHC	2 cut(s)	644, 717
MluCI	AATT	2 cut(s)	96, 780
MlyI	GAGTC	2 cut(s)	96, 777
MmeI	TCCRAC	2 cut(s)	241, 469
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	1 cut(s)	150
MvnI	CGCG	2 cut(s)	353, 638
MwoI	GCNNNNNNNGC	8 cut(s)	228, 294, 378, 432, 456, 564, 648, 797
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	3 cut(s)	7, 11, 807
NgoMIV	GCCGGC	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	592
NmeAIII	GCCGAG	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	716
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	633
PflMI	CCANNNNNTGG	1 cut(s)	687
PkrI	GCNGC	5 cut(s)	230, 670, 673, 697, 793
PleI	GAGTC	2 cut(s)	95, 776
PpsI	GAGTC	2 cut(s)	95, 776
PshBI	ATTAAT	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	592
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
Sau3AI	GATC	3 cut(s)	7, 11, 807
ScaI	AGTACT	1 cut(s)	846
SchI	GAGTC	2 cut(s)	96, 777
SduI	GDGCHC	2 cut(s)	644, 717
SetI	ASST	9 cut(s)	163, 330, 346, 415, 502, 670, 689, 697, 793
Sfr274I	CTCGAG	1 cut(s)	716
SlaI	CTCGAG	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	2 cut(s)	96, 780
SsiI	CCGC	6 cut(s)	101, 126, 228, 353, 426, 638
StyI	CCWWGG	4 cut(s)	306, 534, 576, 795
TaaI	ACNGT	2 cut(s)	376, 844
TaqI	TCGA	4 cut(s)	10, 90, 552, 717
TasI	AATT	2 cut(s)	96, 780
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	4 cut(s)	145, 547, 589, 658
TseI	GCWGC	4 cut(s)	668, 671, 695, 791
TspDTI	ATGAA	3 cut(s)	9, 694, 839
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	4 cut(s)	145, 547, 589, 658
Van91I	CCANNNNNTGG	1 cut(s)	687
VspI	ATTAAT	1 cut(s)	783
XhoI	CTCGAG	1 cut(s)	716
ZrmI	AGTACT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.