Prupe.6G176800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0019790
Physical Location & Seq
Reverse (-)
18123731 .. 18124470
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G176800.1

Sequence Viewer

Length: 264 bp
ATGTGGACCAGTCTACCGGGCCACGATGGATCAAGGTGGCACCAGCCCGTTATCCTTCCACTGCAAAGAGCGGGAGGTAGGCGCTGCTCTGTGAACCCAGCCTCACGCGGTGCCCTCCTCTTTAGGAGCCATGTGGCCCAGAGCTTTCGCTCAGATCACATGGAACAACTCTTTGCTTGGAATGGGCAGGCTAGTAAAGAGCCATACCAGACCCAACCCGTTAATTCTGGGCCAAAGTTCCATCACCTTAATGCCCCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.77

Weight (kDa)

10.81

Isoelectric Point (pI)

69.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019790)

Species Orthologous Gene IDs
prunus_persica Prupe.6G169800_v2.0.a1 Prupe.6G170100_v2.0.a1 Prupe.6G176800_v2.0.a1 Prupe.I004100_v2.0.a1
pyrus_communis pycom08g12450 pycom15g11130
rosa_roxburghii Rroxscaffold_176G00431780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 39, 110
AccBSI CCGCTC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 71, 108
AclWI GGATC 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 110
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AlwI GGATC 1 cut(s) 37
AoxI GGCC 3 cut(s) 19, 135, 230
ApeKI GCWGC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 4 cut(s) 6, 19, 136, 230
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 39, 110
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 20, 249
BcnI CCSGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 4 cut(s) 6, 19, 136, 230
BmiI GGNNCC 3 cut(s) 41, 112, 128
BmrFI CCNGG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 21, 137, 232
BshNI GGYRCC 2 cut(s) 39, 110
BsiSI CCGG 1 cut(s) 17
BsnI GGCC 3 cut(s) 21, 137, 232
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 29, 154
BspACI CCGC 2 cut(s) 71, 108
BspANI GGCC 3 cut(s) 21, 137, 232
BspCNI CTCAG 1 cut(s) 164
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 41, 112, 128
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 2 cut(s) 39, 110
BsrBI CCGCTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 9
BssMI GATC 2 cut(s) 29, 154
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 32, 157
BstMBI GATC 2 cut(s) 29, 154
BstSCI CCNGG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 3 cut(s) 21, 137, 232
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 4 cut(s) 6, 19, 136, 230
CviAII CATG 2 cut(s) 131, 160
CviJI RGCY 9 cut(s) 21, 46, 101, 129, 137, 144, 191, 202, 232
CviKI_1 RGCY 9 cut(s) 21, 46, 101, 129, 137, 144, 191, 202, 232
DdeI CTNAG 1 cut(s) 151
DpnI GATC 2 cut(s) 31, 156
DpnII GATC 2 cut(s) 29, 154
DraIII CACNNNGTG 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 6
FaeI CATG 2 cut(s) 134, 163
FaiI YATR 3 cut(s) 132, 161, 205
FatI CATG 2 cut(s) 130, 159
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 85
GsaI CCCAGC 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 3 cut(s) 21, 137, 232
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 134, 163
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 6, 14, 94
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 3 cut(s) 6, 14, 94
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 151
Hsp92II CATG 2 cut(s) 134, 163
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 29, 154
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 8 cut(s) 22, 30, 56, 111, 152, 173, 213, 221
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 192
MalI GATC 2 cut(s) 31, 156
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 29, 154
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 1 cut(s) 223
MnlI CCTC 4 cut(s) 68, 112, 125, 128
MseI TTAA 2 cut(s) 222, 249
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 108
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 29, 154
NlaIII CATG 2 cut(s) 134, 163
NlaIV GGNNCC 3 cut(s) 41, 112, 128
PkrI GCNGC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 41, 112, 128
PspPI GGNCC 4 cut(s) 6, 19, 136, 230
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 2 cut(s) 222, 249
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 29, 154
Sau96I GGNCC 4 cut(s) 6, 19, 136, 230
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 38, 79, 146, 249
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 1 cut(s) 223
SsiI CCGC 2 cut(s) 71, 108
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 16
TasI AATT 1 cut(s) 223
Tru1I TTAA 2 cut(s) 222, 249
Tru9I TTAA 2 cut(s) 222, 249
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 84
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.