Prupe.I004100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
scaffold_30
OG0019790
Physical Location & Seq
Reverse (-)
13978 .. 14229
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.I004100.1

Sequence Viewer

Length: 252 bp
ATGACAAAGTTTCAAGCTTTGAGGTTAAAAAAAGCAAAAAGGTTTCGGTTCAATTGGGACAGTCTAGCAGGCCATGGCGGATCCGAGTGGCACCGACCCGTTATCCTTCCACTGCCAAGAGCGAGAGGTAGTCGTTGCTCTGTGAAGCCAGCCTTACGCAGTGCCCTCCACTCTAGAAACCCAGTGACCCAGAGCCTTCGCTCAAGCCACAGGGTTCAACTCCTGGCTTGGAATGGGCGGGCCAGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.57

Weight (kDa)

12.0

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019790)

Species Orthologous Gene IDs
prunus_persica Prupe.6G169800_v2.0.a1 Prupe.6G170100_v2.0.a1 Prupe.6G176800_v2.0.a1 Prupe.I004100_v2.0.a1
pyrus_communis pycom08g12450 pycom15g11130
rosa_roxburghii Rroxscaffold_176G00431780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 2 cut(s) 78, 238
AclWI GGATC 2 cut(s) 75, 88
AgsI TTSAA 3 cut(s) 14, 52, 218
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AlwI GGATC 2 cut(s) 75, 88
AoxI GGCC 2 cut(s) 70, 240
AspS9I GGNCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 166
BamHI GGATCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 224
BfaI CTAG 2 cut(s) 65, 174
Bme1390I CCNGG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 82, 92
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 166
BshFI GGCC 2 cut(s) 72, 242
BshNI GGYRCC 1 cut(s) 90
BslFI GGGAC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 2 cut(s) 72, 242
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 2 cut(s) 78, 238
BspANI GGCC 2 cut(s) 72, 242
BspLI GGNNCC 2 cut(s) 82, 92
BspPI GGATC 2 cut(s) 75, 88
BspT107I GGYRCC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 70, 150, 240
BstDSI CCRYGG 1 cut(s) 73
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 72, 242
BtgI CCRYGG 1 cut(s) 73
BtsI GCAGTG 2 cut(s) 110, 166
BtsIMutI CAGTG 3 cut(s) 110, 166, 189
Cac8I GCNNGC 3 cut(s) 70, 150, 240
Cfr13I GGNCC 1 cut(s) 240
CviAII CATG 1 cut(s) 74
CviJI RGCY 8 cut(s) 17, 72, 148, 152, 195, 207, 227, 242
CviKI_1 RGCY 8 cut(s) 17, 72, 148, 152, 195, 207, 227, 242
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 77
FaiI YATR 1 cut(s) 75
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 71
FatI CATG 1 cut(s) 73
FauI CCCGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 65, 174
HaeIII GGCC 2 cut(s) 72, 242
Hin1II CATG 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 116, 206
HpyCH4III ACNGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 7 cut(s) 54, 162, 195, 196, 203, 209, 236
MaeI CTAG 2 cut(s) 65, 174
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 52
MnlI CCTC 3 cut(s) 15, 119, 176
MseI TTAA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 224
NcoI CCATGG 1 cut(s) 73
NdeII GATC 1 cut(s) 80
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 82, 92
NmuCI GTSAC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 82, 92
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 80
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 166
SetI ASST 4 cut(s) 19, 26, 44, 130
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 52
SsiI CCGC 2 cut(s) 78, 238
SspMI CTAG 2 cut(s) 65, 174
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 62
TasI AATT 1 cut(s) 52
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 3 cut(s) 117, 166, 189
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspRI CASTG 3 cut(s) 117, 166, 189
XbaI TCTAGA 1 cut(s) 173
XspI CTAG 2 cut(s) 65, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.