Rroxscaffold_176G00431780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0019790
Physical Location & Seq
Forward (+)
1600100 .. 1601573
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431780.1

Sequence Viewer

Length: 327 bp
ATGGGACAGCCTAGCGAGCCATGGTGGATCCGGAAGGCACCGACGCGTTATCCTTCCACTGCAAAGAGAGGAGGTGATCGCTGCTCTGTGAAACCAGCCTCACGCATTGTCCTCCTCTTTAGGAACCATGAAGCCCAGAGCCTTCGCCCAAGCCGCATAGCCCAACTCCTTGCTTGGAGCGGGCAGGGTTGGGCTCATGGGATGAGTGGCTCAAAGAAAGCTGCAGGCACGCAGGTTATCACTCCAATGAGTATGTGGAGGAAGCAACTGCATATCTCCAAATTTAGAAGTAACAGAATTACAACAAACACTATCAAGTGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.14

Weight (kDa)

11.78

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019790)

Species Orthologous Gene IDs
prunus_persica Prupe.6G169800_v2.0.a1 Prupe.6G170100_v2.0.a1 Prupe.6G176800_v2.0.a1 Prupe.I004100_v2.0.a1
pyrus_communis pycom08g12450 pycom15g11130
rosa_roxburghii Rroxscaffold_176G00431780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 180
AccII CGCG 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 30
AciI CCGC 2 cut(s) 154, 180
AclWI GGATC 2 cut(s) 22, 35
AcsI RAATTY 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 44
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 2 cut(s) 22, 35
Aor13HI TCCGGA 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 81, 221
ApoI RAATTY 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 86
BamHI GGATCC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 68, 208
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 223
BisI GCNGC 3 cut(s) 82, 154, 222
BlsI GCNGC 3 cut(s) 83, 155, 223
BmiI GGNNCC 3 cut(s) 29, 39, 125
BsaJI CCNNGG 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 84, 104
BseXI GCAGC 2 cut(s) 68, 208
Bsh1236I CGCG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 196
Bsp13I TCCGGA 1 cut(s) 30
Bsp143I GATC 2 cut(s) 27, 76
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 2 cut(s) 154, 180
BspEI TCCGGA 1 cut(s) 30
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 3 cut(s) 29, 39, 125
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 223
BspPI GGATC 2 cut(s) 22, 35
BspT107I GGYRCC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 27, 76
BssT1I CCWWGG 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 17, 182, 226, 230
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 46
BstKTI GATC 2 cut(s) 30, 79
BstMBI GATC 2 cut(s) 27, 76
BstMWI GCNNNNNNNGC 2 cut(s) 16, 153
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 68, 208
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 4 cut(s) 17, 182, 226, 230
CseI GACGC 1 cut(s) 52
CviAII CATG 3 cut(s) 21, 128, 197
DpnI GATC 2 cut(s) 29, 78
DpnII GATC 2 cut(s) 27, 76
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 24, 131, 200
FaiI YATR 7 cut(s) 22, 129, 158, 198, 254, 273, 325
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 20, 127, 196
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 82, 154, 222
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 82, 154, 222
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 82, 154, 222
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 24, 131, 200
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 28, 63, 152
HpyCH4V TGCA 4 cut(s) 62, 224, 271, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 153
Hsp92II CATG 3 cut(s) 24, 131, 200
Kpn2I TCCGGA 1 cut(s) 30
Kzo9I GATC 2 cut(s) 27, 76
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 44, 108, 149, 170, 210, 218
Lsp1109I GCAGC 2 cut(s) 68, 208
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 29, 78
MbiI CCGCTC 1 cut(s) 180
MboI GATC 2 cut(s) 27, 76
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 2 cut(s) 281, 297
MluI ACGCGT 1 cut(s) 44
MnlI CCTC 6 cut(s) 62, 65, 109, 122, 125, 252
MroI TCCGGA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 16, 153
NcoI CCATGG 1 cut(s) 20
NdeII GATC 2 cut(s) 27, 76
NlaIII CATG 3 cut(s) 24, 131, 200
NlaIV GGNNCC 3 cut(s) 29, 39, 125
PkrI GCNGC 3 cut(s) 83, 155, 223
PspN4I GGNNCC 3 cut(s) 29, 39, 125
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 245
SatI GCNGC 3 cut(s) 82, 154, 222
Sau3AI GATC 2 cut(s) 27, 76
SduI GDGCHC 1 cut(s) 196
SetI ASST 3 cut(s) 76, 223, 237
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 2 cut(s) 281, 297
SsiI CCGC 2 cut(s) 154, 180
SspMI CTAG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 20
TasI AATT 2 cut(s) 281, 297
TauI GCSGC 1 cut(s) 156
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 81, 221
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.