pycom15g11130

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0019790
Physical Location & Seq
Reverse (-)
7499024 .. 7500015
992 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11130.2

Sequence Viewer

Length: 300 bp
ATGGTGTGTTGGGGGTGTCGTGTTGGTTCAAATTGGAGCGGTCCAGCGGGCCATGATGGATCCGGATGGCACCGACCTGTTATCCTTCCACTGCCAAGAGCGGGTGGTGATCGTTGCTCTGTAAAGCCAGCCTTACGCAGTGCCCTCCGCTTTAGGAGCCGTGAAGCCCAAGCCTTCGCCCAGACCACACGGCTCAACTCTCAGCTTGGAACGGGCGGGCCAGAAAAGAGCCACGACAGAACCGACCCGCTGAGGCCAGACCAGCGTTCCAACACCCTAACGCCCCCACTCGGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.73

Weight (kDa)

11.04

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019790)

Species Orthologous Gene IDs
prunus_persica Prupe.6G169800_v2.0.a1 Prupe.6G170100_v2.0.a1 Prupe.6G176800_v2.0.a1 Prupe.I004100_v2.0.a1
pyrus_communis pycom08g12450 pycom15g11130
rosa_roxburghii Rroxscaffold_176G00431780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 69
AccBSI CCGCTC 2 cut(s) 39, 101
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 6 cut(s) 39, 47, 101, 148, 216, 248
AclWI GGATC 2 cut(s) 54, 67
AfiI CCNNNNNNNGG 3 cut(s) 101, 290, 291
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
AlwI GGATC 2 cut(s) 54, 67
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 3 cut(s) 49, 218, 254
AspS9I GGNCC 3 cut(s) 41, 49, 218
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 50, 60
BceAI ACGGC 2 cut(s) 144, 206
Bme18I GGWCC 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 41, 49, 218
BmiI GGNNCC 3 cut(s) 61, 71, 158
Bpu10I CCTNAGC 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 290, 291
BseAI TCCGGA 1 cut(s) 62
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 101, 290, 291
BseMII CTCAG 2 cut(s) 215, 242
BseSI GKGCMC 1 cut(s) 145
BshFI GGCC 3 cut(s) 51, 220, 256
BshNI GGYRCC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 101, 290, 291
BsnI GGCC 3 cut(s) 51, 220, 256
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 145
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 2 cut(s) 59, 109
BspACI CCGC 6 cut(s) 39, 47, 101, 148, 216, 248
BspANI GGCC 3 cut(s) 51, 220, 256
BspCNI CTCAG 2 cut(s) 214, 243
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 61, 71, 158
BspPI GGATC 2 cut(s) 54, 67
BspT107I GGYRCC 1 cut(s) 69
BsrBI CCGCTC 2 cut(s) 39, 101
BssMI GATC 2 cut(s) 59, 109
BstC8I GCNNGC 3 cut(s) 49, 129, 218
BstDEI CTNAG 2 cut(s) 201, 251
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 2 cut(s) 62, 112
BstMBI GATC 2 cut(s) 59, 109
BstMWI GCNNNNNNNGC 2 cut(s) 156, 262
BstSLI GKGCMC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 3 cut(s) 51, 220, 256
BtsCI GGATG 1 cut(s) 71
BtsI GCAGTG 2 cut(s) 89, 145
BtsIMutI CAGTG 2 cut(s) 89, 145
Cac8I GCNNGC 3 cut(s) 49, 129, 218
Cfr13I GGNCC 3 cut(s) 41, 49, 218
CviAII CATG 1 cut(s) 53
DdeI CTNAG 2 cut(s) 201, 251
DpnI GATC 2 cut(s) 61, 111
DpnII GATC 2 cut(s) 59, 109
Eco47I GGWCC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 290
FaeI CATG 1 cut(s) 56
FaiI YATR 2 cut(s) 54, 298
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 1 cut(s) 52
FauI CCCGC 4 cut(s) 40, 94, 209, 255
FokI GGATG 1 cut(s) 78
HaeIII GGCC 3 cut(s) 51, 220, 256
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 56
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 95, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 262
HpyF3I CTNAG 2 cut(s) 201, 251
Hsp92II CATG 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 62
Kzo9I GATC 2 cut(s) 59, 109
LmnI GCTCC 2 cut(s) 36, 156
LpnPI CCDG 8 cut(s) 57, 76, 90, 141, 194, 234, 270, 275
MalI GATC 2 cut(s) 61, 111
MbiI CCGCTC 2 cut(s) 39, 101
MboI GATC 2 cut(s) 59, 109
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 2 cut(s) 155, 246
MroI TCCGGA 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 47, 250
MspI CCGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 156, 262
NdeII GATC 2 cut(s) 59, 109
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 3 cut(s) 61, 71, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PsiI TTATAA 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 61, 71, 158
PspPI GGNCC 3 cut(s) 41, 49, 218
PsuI RGATCY 1 cut(s) 59
Sau3AI GATC 2 cut(s) 59, 109
Sau96I GGNCC 3 cut(s) 41, 49, 218
SduI GDGCHC 1 cut(s) 145
SetI ASST 2 cut(s) 79, 207
SinI GGWCC 1 cut(s) 41
Sse9I AATT 1 cut(s) 31
SsiI CCGC 6 cut(s) 39, 47, 101, 148, 216, 248
TasI AATT 1 cut(s) 31
TscAI CASTG 2 cut(s) 96, 145
TspRI CASTG 2 cut(s) 96, 145
VpaK11BI GGWCC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.