Prupe.6G214000_v2.0.a1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0019556
Physical Location & Seq
Forward (+)
22186172 .. 22187203
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G214000.1

Sequence Viewer

Length: 519 bp
ATGGGACGCGTAGCGAAGTTCTTATTAGCTTTTCTATGCATCAACATATGGCTGCAAGCCACAGAAGCTCTTCGTTTTCAATTCGGTGTCCAAACCGCAAAAGCACATGACTTTTTGAGGGTTCACAACAATGCACGAAAGCAAATAGGGCTTCCGCCATTGGAGTGGGACGAAAAGCTGGCAGAATTTGCTCGGCACTACGTCAACCTGAGAGCGGCTTCAGGGTGCGGGATGATCCACTCGAACGGGCCCTACGGAGAAAACATCTTCTGGGGCGGCGGGAAGCAGCTGTGGGGAGGGAGGTTCGCGGTGCAATCGTGGTCTCATGAGAAGAAGTTTTATAATCACAAGACCAATAGTTGCATCCCTGGGCAGATGTGTGGGCATTATACGCAGATTGTGTGGAAGGACACAAAGCGTGTGGGCTGTGCTCGTGCTGCATGCACAAATGGAGGAGGGCAGCTCATCATATGCAACTATGATCCTCCAGGGAATTGGCTTGGAGAGAAGCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

173

Amino Acids

19.4

Weight (kDa)

9.35

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09590 AT5G02730
malus_domestica MD02G1191600.v1.1 MD15G1302700.v1.1
prunus_persica Prupe.6G214000_v2.0.a1
pyrus_communis pycom02g15640 pycom15g26600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 2 cut(s) 9, 308
AciI CCGC 7 cut(s) 96, 155, 215, 228, 276, 279, 308
AclWI GGATC 2 cut(s) 229, 476
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 2 cut(s) 367, 487
AluBI AGCT 5 cut(s) 29, 68, 178, 289, 463
AluI AGCT 5 cut(s) 29, 68, 178, 289, 463
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 2 cut(s) 229, 476
AoxI GGCC 1 cut(s) 248
ApaI GGGCCC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 52, 286, 437, 460
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 248, 249
BaeGI GKGCMC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 252
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 4 cut(s) 39, 298, 424, 472
BciT130I CCWGG 2 cut(s) 369, 489
BcoDI GTCTC 1 cut(s) 327
BisI GCNGC 6 cut(s) 53, 216, 277, 287, 438, 461
BlsI GCNGC 6 cut(s) 54, 217, 278, 288, 439, 462
Bme1390I CCNGG 2 cut(s) 369, 489
BmgT120I GGNCC 2 cut(s) 248, 249
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 369, 489
BmsI GCATC 2 cut(s) 48, 372
BplI GAGNNNNNCTC 2 cut(s) 447, 479
BpmI CTGGAG 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 367, 368, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 369, 489
BseDI CCNNGG 3 cut(s) 367, 368, 488
BseGI GGATG 2 cut(s) 237, 363
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 468
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 4 cut(s) 39, 298, 424, 472
Bsh1236I CGCG 2 cut(s) 9, 308
BshFI GGCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 433
BslFI GGGAC 2 cut(s) 18, 182
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 18, 182
BsnI GGCC 1 cut(s) 250
Bso31I GGTCTC 1 cut(s) 327
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 252, 433
Bsp143I GATC 2 cut(s) 234, 481
BspACI CCGC 7 cut(s) 96, 155, 215, 228, 276, 279, 308
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 2 cut(s) 9, 308
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 2 cut(s) 229, 476
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 367, 368, 488
BssMI GATC 2 cut(s) 234, 481
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 369, 489
Bst6I CTCTTC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 57, 180, 442
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 237, 363
BstFNI CGCG 2 cut(s) 9, 308
BstKTI GATC 2 cut(s) 237, 484
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 2 cut(s) 234, 481
BstMWI GCNNNNNNNGC 5 cut(s) 65, 148, 188, 391, 437
BstNI CCWGG 2 cut(s) 369, 489
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 367, 487
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 2 cut(s) 9, 308
BstV1I GCAGC 4 cut(s) 39, 298, 424, 472
BstXI CCANNNNNNTGG 2 cut(s) 165, 495
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 237, 363
Cac8I GCNNGC 3 cut(s) 57, 180, 442
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 248, 249
CseI GACGC 1 cut(s) 15
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 3 cut(s) 107, 326, 441
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 236, 483
DpnII GATC 2 cut(s) 234, 481
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 367, 487
EcoT22I ATGCAT 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 3 cut(s) 110, 329, 444
FaqI GGGAC 2 cut(s) 18, 182
FatI CATG 3 cut(s) 106, 325, 440
FauI CCCGC 2 cut(s) 221, 272
FauNDI CATATG 2 cut(s) 47, 470
Fnu4HI GCNGC 6 cut(s) 53, 216, 277, 287, 438, 461
FokI GGATG 2 cut(s) 244, 350
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 6 cut(s) 53, 216, 277, 287, 438, 461
GluI GCNGC 6 cut(s) 53, 216, 277, 287, 438, 461
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 250
HgaI GACGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 110, 329, 444
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 124, 205
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 2 cut(s) 124, 205
HpyAV CCTTC 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 8 cut(s) 39, 55, 134, 313, 363, 440, 444, 474
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 148, 188, 391, 437
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 110, 329, 444
Kzo9I GATC 2 cut(s) 234, 481
LguI GCTCTTC 1 cut(s) 75
LpnPI CCDG 8 cut(s) 164, 207, 221, 256, 354, 381, 474, 501
Lsp1109I GCAGC 4 cut(s) 39, 298, 424, 472
LweI GCATC 2 cut(s) 48, 372
MaeII ACGT 1 cut(s) 201
MalI GATC 2 cut(s) 236, 483
MbiI CCGCTC 1 cut(s) 215
MboI GATC 2 cut(s) 234, 481
MboII GAAGA 3 cut(s) 62, 259, 343
MhlI GDGCHC 2 cut(s) 252, 433
MluCI AATT 3 cut(s) 80, 185, 493
MluI ACGCGT 1 cut(s) 7
MnlI CCTC 6 cut(s) 111, 290, 294, 446, 449, 495
Mph1103I ATGCAT 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 129, 163
MspA1I CMGCKG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 369, 489
MvaI CCWGG 2 cut(s) 369, 489
MvnI CGCG 2 cut(s) 9, 308
MwoI GCNNNNNNNGC 5 cut(s) 65, 148, 188, 391, 437
NdeI CATATG 2 cut(s) 47, 470
NdeII GATC 2 cut(s) 234, 481
NlaIII CATG 3 cut(s) 110, 329, 444
NlaIV GGNNCC 1 cut(s) 250
NmeAIII GCCGAG 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 41
NspI RCATGY 1 cut(s) 444
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 325
PasI CCCWGGG 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 6 cut(s) 54, 217, 278, 288, 439, 462
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 367, 487
PspGI CCWGG 2 cut(s) 367, 487
PspN4I GGNNCC 1 cut(s) 250
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 248, 249
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PvuII CAGCTG 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 129, 163
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 6 cut(s) 53, 216, 277, 287, 438, 461
Sau3AI GATC 2 cut(s) 234, 481
Sau96I GGNCC 2 cut(s) 248, 249
ScrFI CCNGG 2 cut(s) 369, 489
SduI GDGCHC 2 cut(s) 252, 433
SetI ASST 8 cut(s) 31, 70, 180, 204, 210, 291, 305, 465
SfaNI GCATC 2 cut(s) 48, 372
SmiMI CAYNNNNRTG 2 cut(s) 129, 163
SphI GCATGC 1 cut(s) 444
Sse9I AATT 3 cut(s) 80, 185, 493
SsiI CCGC 7 cut(s) 96, 155, 215, 228, 276, 279, 308
StyD4I CCNGG 2 cut(s) 367, 487
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 242
TasI AATT 3 cut(s) 80, 185, 493
TauI GCSGC 2 cut(s) 218, 279
TseI GCWGC 4 cut(s) 52, 286, 437, 460
TspGWI ACGGA 1 cut(s) 270
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.